Fascinating interaction of the ammonium cation with [2.2.2]paracyclophane: experimental and theoretical study

By means of electrospray ionisation mass spectrometry, it was evidenced experimentally that the ammonium cation (NH₄⁺) reacts with the electroneutral [2.2.2]paracyclophane ligand (C₂₄H₂₄) to form the cationic complex [NH₄(C₂₄H₂₄)]⁺. Moreover, applying quantum chemical calculations, the most probable conformation of the proven [NH₄(C₂₄H₂₄)]⁺ complex was solved. In the complex [NH₄(C₂₄H₂₄)]⁺ having a symmetry very close to C₃, the ‘central’ cation NH₄⁺ is coordinated by three strong bifurcated intramolecular hydrogen bonds to the corresponding six carbon atoms from the three benzene rings of [2.2.2]paracyclophane via cation–π interaction. Finally, the interaction energy, E(int), of the considered complex [NH₄(C₂₄H₂₄)]⁺ was evaluated as ?625.8 kJ/mol, confirming the formation of this fascinating complex species as well. It means that the [2.2.2]paracyclophane ligand can be considered as an effective receptor for the ammonium cation in the gas phase.     

Theoretical study on complexation of the perchlorate,permanganate, pertechnate and perrhenate anions with dodecabenzylbambus[6]uril

By using quantum chemical calculations, the most probable structures of the anionic complex species dodecabenzylbambus[6]uril–ClO₄^?, dodecabenzylbambus[6]uril–MnO₄^?, dodecabenzylbambus[6]uril–TcO₄^? and dodecabenzylbambus[6]uril–ReO₄^? were derived. In these four complexes, each of the considered anions, included in the macrocyclic cavity, is bound by 12 weak hydrogen bonds between methine hydrogen atoms on the convex face of glycoluril units and the respective anion. Further, the corresponding interaction energies of the investigated four anionic complexes were calculated; the absolute values of these calculated energies increase in the series of ReO₄^? < TcO₄^? < MnO₄^? < ClO₄^?.     

[2.2.2]Paracyclophane as a receptor for the cesium cation in the gas phase

By using electrospray ionisation mass spectrometry, it was proven experimentally that the cesium cation (Cs⁺) forms with [2.2.2]paracyclophane (C₂₄H₂₄) the cationic complex [Cs(C₂₄H₂₄)]⁺. Further, applying quantum chemical calculations, the most probable structure of the [Cs(C₂₄H₂₄)]⁺ complex was derived. In the resulting complex with a symmetry very close to C₃, the ‘central’ cation Cs⁺, fully located in the cavity of the parent [2.2.2]paracyclophane ligand, is bound to all three benzene rings of [2.2.2]paracyclophane via cation–π interaction. Finally, the interaction energy, E(int), of the considered cation–π complex [Cs(C₂₄H₂₄)]⁺ was found to be ?73.2 kJ/mol, confirming the formation of this fascinating complex species as well. This means that [2.2.2]paracyclophane can be considered as a receptor for the Cs⁺ cation in the gas phase.     

A combined experimental and theoretical study of the alkylation of 3,5‐dithioxo‐[1,2,4]triazepines

The chemo‐ and regioselective alkylation reactions of 3,5‐dithioxo[1,2,4]triazepine 1 in a basic medium with α,ω‐dibromoalkanes 2a – c , Br(CH₂)_nBr (n = 1–3), are studied experimentally and theoretically. These alkylations, which occur at the thioxo sulfur atom in position 5, afford mainly 5‐bromomethylthio‐2,7‐dimethyl‐ 2,3‐dihydro‐ 4H[1,2,4]triazepin‐3‐one 3 for n = 1, 6,8‐dimethyl‐5‐thioxo‐2,3,4,5‐tetrahydro‐6H[1,3]thiazolo[4,5‐d][1,2,4]triazepine 4 for n = 2 and 7,9‐dimethyl‐6‐thioxo‐2,3,4,5,6,7‐hexahydro[1,3]thiazino [4,5‐d][1,2,4]triazepine 5 for n = 3. Theoretical calculations have been carried out at the B3LYP/6‐31G* and B3LYP(benzene)/6‐311+G*//B3LYP/6‐31G* levels, in order to rationalize the experimental observations. Both chemo‐ and regio‐selectivities of the alkylation reactions are analyzed. Copyright © 2008 John Wiley & Sons, Ltd.     

Effect of alcohol consumption on the liver detoxication capacity as measured by [13C]methacetin- and [methyl-13C]methionine-breath tests

The aim of this study was to investigate the hepatic microsomal and mitochondrial functions by using the ¹³CO₂-breath test in healthy subjects either before or after the consumption of red wine. Fourteen adults received [¹³C]methacetin and [methyl-¹³C]methionine together with a standardised dinner. Expired air samples were taken over 6 h. After a wash-out period, the subjects consumed 0.4 ml ethanol/kg/day together with dinner over a 10-day period. Thereafter, ¹³C-tracer administration was repeated under identical conditions. The ¹³CO₂-enrichments were measured by isotope ratio mass spectrometry. The mean cumulative percentage ¹³C-dose recovery (CPDR) after administration of [¹³C]methacetin and [methyl-¹³C]methionine either without or with red wine consumption amounted to 38.2±6.3 vs. 36.3±6.7% (p=0.363) and 9.5±3.3 vs. 8.8±2.5% (p=0.47), respectively. Moderate alcohol consumption does not induce significant short-term changes of the microsomal and the mitochondrial functions of the human liver in healthy subjects.     

Simultaneous measurement of neuronal and glial metabolism in rat brain in vivo using co-infusion of [1,6-C2]glucose and [1,2-C2]acetate

In this work the feasibility of measuring neuronal-glial metabolism in rat brain in vivo using co-infusion of [1,6-¹³C₂]glucose and [1,2-¹³C₂]acetate was investigated. Time courses of ¹³C spectra were measured in vivo while infusing both ¹³C-labeled substrates simultaneously. Individual ¹³C isotopomers (singlets and multiplets observed in ¹³C spectra) were quantified automatically using LCModel. The distinct ¹³C spectral pattern observed in glutamate and glutamine directly reflected the fact that glucose was metabolized primarily in the neuronal compartment and acetate in the glial compartment. Time courses of concentration of singly and multiply-labeled isotopomers of glutamate and glutamine were obtained with a temporal resolution of 11 min. Although dynamic metabolic modeling of these ¹³C isotopomer data will require further work and is not reported here, we expect that these new data will allow more precise determination of metabolic rates as is currently possible when using either glucose or acetate as the sole ¹³C-labeled substrate.     

[13C]Aminopyrine and [13C]Caffeine Breath Test: Influence of Gender,Cigarette Smoking and Oral Contraceptives Intake

Abstract

The [¹³C]aminopyrine breath test ([¹³C]ABT) measures the global activity of cytochrome P450 in vivo and is a sensitive indicator of liver metabolic dysfunction. The present study aims to determine whether gender and cigarette smoking influence the results of [¹³C]ABT as well as to confirm the effect of oral contraceptive steroids (OCS) intake on this metabolic test. Hundred and ten healthy subjects, including men and women, smoker and non-smoker, women taking OCS or not, were phenotyped for CYP1A2 using the [¹³C]caffeine breath test and underwent a [¹³C]ABT. Both tests showed large inter-individual variations in accordance with that of CYP450 liver content. [¹³C]ABT was sensitive enough to point out a significant induction or inhibition related to cigarette smoking habits or OCS. The combined effect of smoking and OCS resulted in an overall unchanged metabolic activity. Consequently, the impact of the studied conditions on the [¹³C]ABT parameters must be considered by clinicians or clinical investigators.     

Experimental (UV,NMR, IR and Raman) and theoretical spectroscopic properties of 2-chloro-6-methylaniline

In this work, the experimental and theoretical UV, NMR and vibrational spectra of 2-chloro-6-methylaniline (2-Cl-6-MA, C₇H₈NCl) were studied. The ultraviolet absorption spectra of compound that dissolved in ethanol were examined in the range of 200–400 nm. The ¹H, ¹³C and DEPT NMR spectra of the compound were recorded. FT-IR and FT-Raman spectra of 2-Cl-6-MA in the liquid phase were recorded in the region 4000–400 cm^?1 and 3500–50 cm^?1, respectively. The structural and spectroscopic data of the molecule in the ground state were calculated using density functional theory (DFT) employing B3LYP exchange correlation and the 6-311++G(d,p) basis set. The vibrational frequencies were calculated and scaled values were compared with experimental FT-IR and FT-Raman spectra. The observed and calculated frequencies were found to be in good agreement. The complete assignments were performed on the basis of the total energy distribution (TED) of the vibrational modes, calculated with scaled quantum mechanics (SQM) method. Isotropic chemical shifts were calculated using the gauge-invariant atomic orbital (GIAO) method. Comparison of the calculated NMR chemical shifts and absorption wavelengths with the experimental values revealed that DFT method produces good results.     

Luminescence of La3F3[Si3O9]:Ce

The luminescence properties of Ce³⁺ in La₃F₃[Si₃O₉] are reported. Excitation and emission bands corresponding to 4f¹→5d¹ transitions of Ce³⁺ were identified. The center of gravity of the 5d states lies at remarkable high energy (43.2×10³ cm⁻¹) for Ce³⁺ in a silicate compound. This high value is attributed to the combined oxygen/fluoride coordination of the Ce³⁺ ion. Emission from the lowest 4f5d level to the ²F_5/2 and ²F_7/2 levels was found at 32.4×10³ and 30.4×10³ cm⁻¹. These results are compared with literature data on silicates and fluorides. From the values found for Ce³⁺, predictions are made for the positions of the 4f5d bands of Pr³⁺ and Er³⁺ in La₃F₃[Si₃O₉]. For both ions, it is concluded that in this host lattice emission is expected from high lying 4fⁿ energy levels.     

Structure and properties of α‐cyclo[N]thiophenes as potential electronic materials – a theoretical study

Density functional theory (DFT) calculations of ring‐shaped α‐cyclo[N]thiophenes with N = 2 to N = 18 have been performed for ideal structures of high symmetry (point groups C_nv and D_nh) and for optimum energy structures of lower symmetry (D_2d, C_s, C_2v, C_i or C₁). Whereas the first three members of the series behave exceptionally the higher members are typical cyclothiophenes consisting of weakly interacting thiophene rings. In contrast to neutral compounds, cations and dications of cyclothiophenes with N ≥5 exhibit pronounced electron delocalizations along the carbon backbone. However, if the functional B3LYP is replaced by BH cations of large ring‐size cations show polaron‐type charge defects. According to broken symmetry DFT calculations dications with N = 14 and N = 18 have biradical character. These structures correspond to two‐polaron‐type structures rather than to dipolarons. The calculated vertical ionization energies of cyclo[N]thiophene are comparable with those of oligo[N]thiophenes of the same number of thiophene rings but the calculated absolute energies are probably too low at large ring size. Cyclothiophenes absorb light of lower energies than the related oligothiophenes. Cyclothiophenes belong to the strongly absorbing organic chromophores. In case of high molecular symmetry some of the excited states of cyclothiophenes are degenerate. The degeneracy is lifted with lower symmetries but the general absorption feature remains. The theoretical results are discussed with respect to recent experimental findings. Copyright © 2007 John Wiley & Sons, Ltd.     

A theoretical density functional study of association of Zn2+ with oxazolidine and its thio derivatives in the gas phase

We have performed density functional theory (DFT) calculations in order to study the gas‐phase interaction of oxo‐ and thio‐oxazolidine derivatives with Zn²⁺. The calculations were performed at B3LYP/6‐311+(2df,2p) level of theory. It has been found, in all cases, that the direct association of Zn²⁺ with the carbonyl and thiocarbonyl groups takes place at the heteroatom attached to position 2 irrespective of its nature. This preference has been attributed to the resonance effects caused by the nearest heteroatoms (oxygen and nitrogen). The most stable complexes correspond to structures with Zn²⁺ bridging between the heteroatom at position 2 or 4 of the 4‐ or 2‐enol (or the 4‐ or 2‐enethiol) tautomer and the dehydrogenated ring nitrogen atom, N3. Zn²⁺ association has a clear catalytic effect on the tautomerization processes which connect the oxo–thione forms with the enol–enethiol tautomers. Hence, although the enol–enethiol tautomers of oxazolidine and its thio derivatives should not be observed in the gas phase, the corresponding Zn²⁺ complexes are the most stable species and should be accessible, because the tautomerization barriers are smaller than the Zn²⁺ binding energies. Copyright © 2010 John Wiley & Sons, Ltd.     

The thermoelastic properties of [N(CH3)4]2ZnBr4 and [N(CH3)4]2MnBr4

The ferrodistortive phase transition in the bis-tetramethylammonium tetrabromide crystals below room temperature is studied within the framework of the Landau theory. The specific heats of [N(CH₃)₄]₂MnBr₄ and [N(CH₃)₄]₂ZnBr₄ are correctly described down to 40°C below the transition temperature. The phenomenological parameters are determined from calorimetric results, elastic constants and thermal expansion data. Using these coefficients, the monoclinic angle in the ferrodistortive phases is obtained. The anharmonic quantities, such as the isothermal compressibility, calculated from the specific heat data, are in good agreement with the values derived from the elastic measurements.     

1H NMR study of [N(CH3)4]2ZnCI4 at high pressures and low temperatures

Wide-line proton NMR studies on polycrystalline tetramethylammonium tetrachlorozincate have been carried out at high hydrostatic pressures up to 15 kbar in the temperature range 77-300 K and at ambient pressure down to 4.2 K. A second-moment transition is observed to occur starting around 161 K, the temperature for the V-VI phase transition. This transition temperature is seen to have a negative pressure coefficient up to 2 kbar, beyond which it changes sign. At 77 K the second moment decreases to 4 kbar and then increases again as a function of pressure. The results are explained in terms of the dynamics of the N(CH₃)₄ groups.     

Experimental and theoretical study of the mechanism for the kinetic of elimination of methyl carbazate in the gas phase

The elimination kinetic of methyl carbazate in the gas phase was determined in a static system over the temperature range of 340–390 °C and pressure range of 47–118 Torr. The reaction is homogeneous, unimolecular, and obeys a first order rate law. The decomposition products are methyl amine, nitrous acid, and CO gas. The variation of the rate coefficients with temperatures is given by the Arrhenius expression: log k₁ (s^?1) = (11.56 ± 0.34) ? (180.7 ± 4.1) kJ mol^?1(2.303 RT)^?1. The estimated kinetics and thermodynamics parameters are in good agreement to the experimental values using B3LYP/6‐31G (d,p), and MP2/6‐31G (d,p) levels of theory. These calculations imply a molecular mechanism involving a concerted non‐synchronous quasi three‐membered ring cyclic transition state to give an unstable intermediate, 1,2‐oxaziridin‐3‐one. Bond order analysis and natural charges implies that polarization of O (alkyl)? C (alkyl) bond of the ester is rate determining in this reaction. Copyright © 2008 John Wiley & Sons, Ltd.     

Photophysical characteristics of three novel benzanthrone derivatives: Experimental and theoretical estimation of dipole moments

The effect of solvents on absorption and fluorescence spectra and dipole moments of novel benzanthrone derivatives such as 3-N-(N′,N′-Dimethylformamidino) benzanthrone (1), 3-N-(N′,N′-Diethylacetamidino) benzanthrone (2) and 3-morpholinobenzanthrone (3) have been studied in various solvents. The fluorescence lifetime of the dyes (1-3) in chloroform were also recorded. Bathochromic shift observed in the absorption and fluorescence spectra of these molecules with increasing solvent polarity indicates that the transitions involved are π→π^?. Using the theory of solvatochromism, the difference in the excited-state (μ_e) and the ground-state (μ_e) dipole moments was estimated from Lippert-Mataga, Bakhshiev, Kawski-Chamma-Viallet, and McRae equations by using the variation of Stokes shift with the solvent’s relative permittivity and refractive index. AM1 and PM6 semiempirical molecular calculations using MOPAC and ab-initio calculations at B3LYP/6-31 G^? level of theory using Gaussian 03 software were carried out to estimate the ground-state dipole moments and some other physicochemical properties. Further, the change in dipole moment value (Δμ) was also calculated by using the variation of Stokes shift with the molecular-microscopic empirical solvent polarity parameter (E_T^N). The excited-state dipole moments observed are larger than their ground-state counterparts, indicating a substantial redistribution of the π-electron densities in a more polar excited state for all the systems investigated.     

Comment on “The structure of monolayer SiO2 on Mo(1 1 2): A 2-D [Si-O-Si] network or isolated [SiO4] units?”

In a recent paper by Chen and Goodman [M. Chen, D.W. Goodman, Surf. Sci. 600 (2006) L255] the structure of SiO₂ films epitaxially grown on Mo(1 1 2) has been revisited. This structure has been the subject of several experimental and theoretical studies but it is still controversial, with some authors claiming that it is formed by isolated [SiO₄] units and others in favor of a two-dimensional [Si-O-Si] network. With this Comment we want do underline some aspects of the discussion, in particular related to the theoretical work performed so far on this subject, which in our opinion have not been properly represented in Ref. [M. Chen, D.W. Goodman, Surf. Sci. 600 (2006) L255].