Peptide-functionalized polyphenylene dendrimers

This contribution describes the synthesis of polyphenylene dendrimers that are functionalized with up to 16 lysine residues or substituted with short peptide sequences composed of 5 lysine or glutamic acid repeats and a C- or N-terminal cysteine residue. Polyphenylene dendrimers were prepared via a sequence of Diels-Alder cycloaddition and deprotection reactions from cyclopentadienone building blocks. Single amino acids could be introduced on the periphery of the dendrimers by using amino acid substituted cyclopentadienones in the last Diels-Alder addition reaction. Alternatively, peptide sequences were attached via a chemoselective reaction, which involved the addition of the sulfhydryl group of a cysteine residue of an oligopeptide to a maleimide moiety present on the surface of the dendrimer. These amino acid and peptide functionalized dendrimers may be of interest as model compounds to study DNA complexation and condensation or as building blocks for the preparation of novel supramolecular architectures via layer-by-layer self-assembly.     

Single-crystal structures of polyphenylene dendrimers

A series of first-generation polyphenylene dendrimers based on three different cores were prepared by Diels-Alder cycloaddition and their single-crystal structures were determined. Consisting exclusively of interlocked, twisted phenyl rings, these polyphenylene nanostructures have exciting structural and dynamic properties. Single crystals of dendrimers, suitable for X-ray structure analysis, were grown from different solvent mixtures by slow evaporation at room temperature. It should be pointed out that one of the described polyphenylene dendrimers represents up to now the biggest oligophenylene nanostructure from which crystallographic data is available.     

Water-soluble polyelectrolyte complexes of pyridine-containing polyphenylene dendrimers

The sizes of soluble polyelectrolyte complexes formed through mixing of solutions of dimethyl sulfate-alkylated rigid pyridine-containing polyphenylene dendrimers of various generations with the solution of sodium polystyrenesulfonate are measured with the use of dynamic light scattering. Effects of the length of the polyanion chain of the dendrimer, the generation number of the dendrimer, and the charge ratio of polymer components on the sizes of the complexes are examined. The results of this study are in agreement with the theoretical analysis of interaction between the charged dendrimer and the polyelectrolyte of the opposite charge sign and suggest the spontaneous formation of nanosized particles of water-soluble complexes.     

On-surface cyclodehydrogenation reaction pathway determined by selective molecular deuterations

Understanding the reaction mechanisms of dehydrogenative C_aryl–C_aryl coupling is the key to directed formation of π-extended polycyclic aromatic hydrocarbons. Here we utilize isotopic labeling to identify the exact pathway of cyclodehydrogenation reaction in the on-surface synthesis of model atomically precise graphene nanoribbons (GNRs). Using selectively deuterated molecular precursors, we grow seven-atom-wide armchair GNRs on a Au(111) surface that display a specific hydrogen/deuterium (H/D) pattern with characteristic Raman modes. A distinct hydrogen shift across the fjord of C_aryl–C_aryl coupling is revealed by monitoring the ratios of gas-phase by-products of H₂, HD, and D₂ with in situ mass spectrometry. The identified reaction pathway consists of a conrotatory electrocyclization and a distinct [1,9]-sigmatropic D shift followed by H/D eliminations, which is further substantiated by nudged elastic band simulations. Our results not only clarify the cyclodehydrogenation process in GNR synthesis but also present a rational strategy for designing on-surface reactions towards nanographene structures with precise hydrogen/deuterium isotope labeling patterns.

Selective deuterations were exploited to synthesize graphene nanoribbons on Au(111) surface with a specific H/D pattern on edges, allowing the determination of cyclodehydrogenation reaction pathway within the framework of pericyclic reactions.     

Shape persistence and bistability of planar three-fold core polyphenylene dendrimers: a molecular dynamics study

We present an atomistic molecular dynamics investigation of the structural time evolution of isolated polyphenylene dendrimers, carbon based dendrimers with a planar core formed by a 1,3,5 trisubstituted benzene ring. Simulations are carried out at low (80 K) and room temperature. A general classification of the conformations (core conformations) assumed by the three dendrimer branches with respect to the planar core is presented. It is found that out of the six possible core conformations only four are stable, the remaining two being unstable for steric reasons. For second generation dendrimers, two of the four accessible core conformations are associated with an open arrangement of the three branches attached to the planar 3-fold core of the dendrimer, whereas the remaining two are associated with a collapsed arrangement of two branches. At low temperature the initial conformation is generally conserved whereas at room temperature jumps among the four possible core conformations are observed in the nanosecond time range. For second generation dendrimers the core conformation jumps are associated with an oscillation between two global shape states: open and collapsed. The computed bistability of the global shape suggests additional possible functional uses for some of these carbon based dendrimers.     

Molecular modeling simulations of the morphology of polyphenylene dendrimers

Three polyphenylene dendrimers were studied by molecular modeling techniques with the goal of better defining the notion of shape persistence often associated with these molecules. We show that despite the rigidity of the monomers, a large variety of dendrimer morphologies is accessible, in large part due to the asymmetrical branching pattern of the monomers (they have nodes in meta and para positions with respect to their anchor point). The folding ability of a branch depends on the number and sequence of the meta and para nodes it contains: while some of the branches are always straight, others can fold back, and the amplitude of that folding increases with generation. As a result, the range of accessible morphologies increases with the generation, from a dense-shell model in low generation to a model intermediate between a dense shell and a dense core in high generation. When the typical A2B monomer is replaced by an A4B monomer, the dense packing limit is reached as early as the second generation because of a higher density and the presence of nodes in the ortho position, which are oriented backward.     

Toward nanoamphiphiles: efficient synthesis of desymmetrized polyphenylene dendrimers

A new synthetic approach for the desymmetrization of polyphenylene dendrimers (PPDs) is described. Tetrakis(4-ethynylphenyl)methane undergoes facile Diels-Alder cycloaddition with substoichiometric quantities of tetraphenylcyclopentadienones bearing one polar functional group. A single ethynyl group is thereby converted to a rigid, selectively functionalized polyphenylene moiety, which serves as a focal point for further transformations or interfacial anchoring. This is the key feature for the design of desymmetrized monodisperse macromolecules with a spherical shape. The remaining unreacted ethynyl groups provide a trifold core for the stepwise elaboration of first- and second-generation polyphenylene dendrons, which may, in turn, bear specific numbers of different peripheral functional groups at their terminae. Moreover, the resulting macromolecules exhibit the characteristic shape-persistence and monodispersity of PPDs. This approach is an important achievement in nanosciences, especially for tailoring new nanoamphiphiles. It is also of synthetic importance, as it enables the separation of two regioisomeric polyphenylene dendrimers for the first time.     

Synthesis of polyphenylene dendrimers related to "cubic graphite"

Four large, 6-fold symmetric, polyphenylene hydrocarbons have been prepared by short syntheses that chiefly employed alkyne trimerization, palladium-catalyzed coupling, and Diels-Alder reactions. The two largest of these molecules, hexakis[4'-(pentaphenylphenyl)biphenyl-4-yl]benzene (4, C(294)H(198)) and hexakis[4'-(2,3,4,5-tetraphenylphenyl)biphenyl-4-yl]benzene (5, C(258)H(174)) are substructures of "phenylogous cubic graphite", and the other two, hexakis(2',3',4',5',6'-pentaphenylbiphenyl-4-yl)benzene (26, C(258)H(174)) and hexakis(2',3',4',5'-tetraphenylbiphenyl-4-yl)benzene (25, C(222)H(150)) are strongly pitched, six-bladed molecular propellers. The X-ray crystal structure of compound 26 has also been determined; dendrimer 26 is at present the largest crystallographically characterized hydrocarbon.     

Efficient synthesis of porphyrin-containing,benzoquinone-terminated,rigid polyphenylene dendrimers

A series of rigid polyphenylene, free-base porphyrin-containing dendrimers terminated with either dimethoxybenzene or benzoquinone end-groups were prepared by a combined divergent and convergent synthesis. Unlike previous routes for preparing polyphenylene dendrimers that are incompatible with end-groups bearing certain functional moieties, the synthetic methodology chosen for this work enables incorporation of functional groups on the dendrimer end-groups during preparation of the dendrimer wedges and during synthesis of the final dendrimer. The basic strategy utilized a convergent preparation of dendrimer wedges using Suzuki coupling conditions, which were then either attached to a porphyrin core in a divergent coupling step or cyclized to form the porphyrin dendrimer in a convergent step. The latter approach was found to be more general and resulted in higher yields and more readily separated products. Steady-state absorption measurements for these dendrimers showed Soret and Q-band absorptions typical of free-base porphyrins. Preliminary steady-state fluorescence measurements of these dendrimers indicate quenching of the S1 state of the free-base porphyrin in all benzoquinone-containing dendrimers that is attributed to efficient electron-transfer from the excited porphyrin to the benzoquinone end-groups. The amount of fluorescence quenching was in good agreement with the number of benzoquinone groups at the dendrimer periphery and the distance between the porphyrin and benzoquinone groups as calculated by semiempirical (AM1) molecular orbital calculations.     

Thermodynamic properties of pyridine-containing polyphenylene dendrimers of the first-fourth generations

The temperature dependence of the heat capacity C _p° = f(T) of hard pyridine-containing polyphenylene dendrimers of the first, third, and fourth generations was studied for the first time in an adiabatic calorimeter at 6–300 K. Using the experimental data obtained, the standard thermodynamic functions, viz., heat capacity, enthalpy, entropy, and Gibbs energy in the range from T → 0 to 300 K, were calculated for these dendrimers and the value of standard entropy of formation of the studied compounds at T = 298.15 K was estimated. The low-temperature heat capacity of the dendrimers was analyzed on the basis of the Tarasov and Debye theories of heat capacity of solids and by the multifractal method. The characteristic temperatures and fractal dimensionality D were determined, and some conclusions about the type of structure topology were drawn. The isotherms of the dependence of thermodynamic functions of the dendrimers on the molecular weight were obtained.     

Synthesis and optical properties of polyphenylene dendrimers based on perylenes

A series of polyphenylene-dendronized perylenes have been synthesized, and their physical and mesoscopic properties have been investigated. The attached polyphenylene dendrons have significant effects on the physical properties of the perylenes. They increase the solubility of perylenes in common organic solvents, suppress significantly the aggregation of the perylene core, and lead to red-shifted absorption and emission. The polyphenylene dendrons give rise to a strong absorption band in the UV region and exhibit efficient intramolecular energy transfer to the perylene moiety. The functionalization of perylenes with polyphenylene dendrons allows the preparation of films by spin-coating.     

Controlled MegaDalton assembly with locally stiff but globally flexible polyphenylene dendrimers

The divergent polyphenylene dendrimer synthesis of the largest chemically monodisperse molecules to date, up to 28 nm at 271.6 kDa for the sixth generation, is presented. Monodispersity, conformational flexibility, and an assembly behavior reminiscent of multimeric proteins for the locally stiff, macroporous dendrimers were evaluated with a combination of molecular and polymer characterization tools, namely size exclusion chromatography, atomic force microscopy, ultrahigh-mass MALDI-TOF mass spectrometry, and dynamic light scattering. Remarkably, the high-precision MegaDalton assembly of shape-adaptable dendrimers occurs in the absence of electrostatic or hydrogen-bonding interactions and is the product of Lilliputian solvophobic interactions, mediated by the dendrimer arm size, shape, and stiffness. This covalent/noncovalent approach offers a general molecular shaping motif that is completely different than what has been previously accessible with conventional self-assembly.     

Origin of simultaneous donor-acceptor emission in single molecules of peryleneimide-terrylenediimide labeled polyphenylene dendrimers

F?rster type resonance energy transfer (FRET) in donor-acceptor peryleneimide-terrylenediimide dendrimers has been examined at the single molecule level. Very efficient energy transfer between the donor and the acceptor prevent the detection of donor emission before photobleaching of the acceptor. Indeed, in solution, on exciting the donor, only acceptor emission is detected. However, at the single molecule level, an important fraction of the investigated individual molecules (about 10-15%) show simultaneous emission from both donor and acceptor chromophores. The effect becomes apparent mostly after photobleaching of the majority of donors. Single molecule photon flux correlation measurements in combination with computer simulations and a variety of excitation conditions were used to determine the contribution of an exciton blockade to this two-color emission. Two-color defocused wide-field imaging showed that the two-color emission goes hand in hand with an unfavorable orientation between one of the donors and the acceptor chromophore.     

Multichromophoric polyphenylene dendrimers: toward brilliant light emitters with an increased number of fluorophores

Two routes for the introduction of highly fluorescent peryleneimide chromophores into the scaffolding of polyphenylene dendrimers via iterative Diels-Alder cycloadditions are presented. The key intermediates for the divergent dendrimer buildup were two cyclopentadienone branching units carrying two peryleneimides and two masked terminal alkynes. The difference between the two reagents is the mode of incorporation of the chromophores. In the first case, the chromophores were attached to the alpha-position of the tetraphenylcyclopentadienones. In the second case, peryleneimides are used as a "spacer" in the beta-position of the cyclopentadienones giving rise to dendrimers with extended molecular diameters (up to 12 nm) and 24 chromophores within their scaffold. Absorption and emission characteristics of the new multichromophoric nanoparticles were investigated and compared to those of the parent dyes. Additionally, an asymmetrically substituted first-generation dendrimer with six perylene diimide chromophores and one ester functionality is reported. The ester serves as a potential anchor group, and this nanoemitter paves the way to a multichromophoric fluorescence label. All dendrimers have good solubility in common organic solvents, high fluorescence quantum yields, and defined distances between the chromophores, making them attractive candidates for single-molecule spectroscopy.     

Oxygenic polyoxometalates: a new class of molecular propellers

The oxygen evolving catalyst [Ru(4)(μ-OH)(2)(μ-O)(4)(H(2)O)(4)(γ-SiW(10)O(36))(2)](10-) effects H(2)O(2) dismutation at rates (k = 36.8 ± 1.4 M(-1) s(-1)), one/two order of magnitude higher compared to related tetra-substituted Cu, Fe, Mn, Ni and even Co polyoxometalates, thus providing localised oxygen gas bursts to power nano-propulsion of composite materials.     

Nanosized gradient pi-conjugated thienylethynylene dendrimers for light harvesting: synthesis and properties

[reaction: see text] A family of pi-conjugated dendrimers based on truxene and thienylethynylene units are synthesized via a mixed divergent/convergent growth approach. These dendrimers possess an intrinsic energy gradient from the periphery to the core through branches and thus show a broad absorption in the UV-vis range and an efficient energy transfer to the lower-energy center. The molecules hence have the potential to be used as light harvesting materials.     

Optical activity and helicity enhancement of diphenylmethyl molecular propellers

The diphenylmethyl group is a molecular propeller that can detect the chirality of a nearby stereogenic center through electronic circular dichroism spectra, within the short wavelength region of the phenyl ¹B transitions (190–200 nm). A positive exciton Cotton effect was associated with a positive (P) helicity of the diphenylmethyl group, while the opposite was true for M helicity. Higher helicity discrimination was observed in the presence of a hydroxy group (in hydroxydiphenylmethyl derivatives) which formed an intramolecular hydrogen bond, thus reducing the number of accessible conformers of the molecule. We found that the hydroxydiphenylmethyl groups in chiral tartaric acid TADDOL derivatives were preferably heterohelical (P, M).     

Fluorescence quenching mechanism of a polyphenylene polyelectrolyte with other macromolecules: cytochrome c and dendrimers

This study investigates the fluorescence quenching of a polyphenyl based polyelectrolyte by positively charged macromolecules (proteins and dendrimers). This work shows that the fluorescence quenching of the dendrimer materials does not involve energy transfer or electron transfer but is correlated to the overall charge on the dendrimer and its size. The quenching is hypothesized to result from conformational changes that occur upon binding the polyelectrolyte to the protein or dendrimer. This mechanism is qualitatively different from that invoked for small-molecule analytes.     

Two small molecular propellers and their rotational potential energy surfaces

Molecular propellers based upon the twisting of a disulfide bond are analyzed here as the locomotion source for fullerene nanoparticles. The HC(CCHSSHCC)₃CH and related HC(CCHSSNC)₃CH bicyclic compounds are optimized and linked to pyracyclene functioning as a model fullerene surface. It is shown that steric hinderance from the hydrogen atoms on both the bottom of the propeller blade and the linker to the fullerene surface can have significant effects on the rotational potential energy surface. Replacing the bottom CH groups on the molecular propeller with nitrogen atoms not only reduces these barriers significantly, but this action creates a strongly dipolar molecule in HC(CCHSSNC)₃CH. Such a system would be responsive to and controllable with an external, rotating, magnetic or electric field. Endohedral fullerenes have known applications for targeted delivery, especially in nanomedicine. Providing further control with molecular propellers could enhance the feasibility and use of these technologies.