Fluorescent Alteration on a Bistable Molecular Shuttle

Solvent driven molecular shuttles containing a pyrene‐connected macrocycle and an intramolecular charge‐transfer (ICT) chromophore stopper are constructed. In one of the molecular shuttles, a long C‐10 chain is introduced in the thread to separate the peptide station and the ICT stopper. The macrocycle stays in the peptide station in apolar solvents and moves to the C10‐chain station in highly polar solvents. This moving process alters the electronic interaction between the pyrene unit in the macrocycle and the ICT stopper, which induces the change of the pyrene fluorescence emission. The molecular shuttle exhibits stronger emission when the macrocycle is adjacent to the ICT stopper.     

分子机器的回顾与展望——2016年诺贝尔化学奖简介

1983年,让-皮埃尔·索瓦日将2个环形分子连接在一起形成链,并将其命名为索烃。2个互锁的环可以彼此相对移动,这是第一个分子机器的雏形。1991年,詹姆斯·弗雷泽·斯托达特制备了一种轮烷,并展示了分子轴上的分子环能够沿着轴移动。基于轮烷,他设计研发了分子电梯和分子肌肉等分子机器。1999年,伯纳德·费林加成为第一个开发分子马达的人,并且根据它设计制造出分子汽车。基于上述3位科学家在分子机器研究领域的杰出贡献,他们分享了2016年诺贝尔化学奖。     

Active Esters as Pseudostoppers for Slippage Synthesis of [2]Pseudorotaxane Building Blocks: A Straightforward Route to Multi‐Interlocked Molecular Machines

The efficient synthesis and very easy isolation of dibenzo[24]crown‐8‐based [2]pseudorotaxane building blocks that contain an active ester motif at the extremity of the encircled molecular axle and an ammonium moiety as a template for the dibenzo[24]crown‐8 is reported. The active ester acts both as a semistopper for the [2]pseudorotaxane species and as an extensible extremity. Among the various investigated active ester moieties, those that allow for the slippage process are given particular focus because this strategy produces fewer side products. Extension of the selected N‐hydroxysuccinimide ester based pseudorotaxane building block by using either a mono‐ or a diamino compound, both containing a triazolium moiety, is also described. These provide a pH‐dependent two‐station [2]rotaxane molecular machine and a palindromic [3]rotaxane molecular machine, respectively. Molecular machinery on both interlocked compounds through variation of pH was studied and characterized by means of NMR spectroscopy.     

分子机器的研究进展

结合分子机器的基本概念、合成方法、驱动方式以及研究的意义, 综述了近几年分子机器的研究进展, 探讨了下一步研究的发展方向.     

Bistable or Oscillating State Depending on Station and Temperature in Three‐Station Glycorotaxane Molecular Machines

High‐yield, straightforward synthesis of two‐ and three‐station [2]rotaxane molecular machines based on an anilinium, a triazolium, and a mono‐ or disubstituted pyridinium amide station is reported. In the case of the pH‐sensitive two‐station molecular machines, large‐amplitude movement of the macrocycle occurred. However, the presence of an intermediate third station led, after deprotonation of the anilinium station, and depending on the substitution of the pyridinium amide, either to exclusive localization of the macrocycle around the triazolium station or to oscillatory shuttling of the macrocycle between the triazolium and monosubstituted pyridinium amide station. Variable‐temperature ¹H NMR investigation of the oscillating system was performed in CD₂Cl₂. The exchange between the two stations proved to be fast on the NMR timescale for all considered temperatures (298–193 K). Interestingly, decreasing the temperature displaced the equilibrium between the two translational isomers until a unique location of the macrocycle around the monosubstituted pyridinium amide station was reached. Thermodynamic constants K were evaluated at each temperature: the thermodynamic parameters ΔH and ΔS were extracted from a Van′t Hoff plot, and provided the Gibbs energy ΔG. Arrhenius and Eyring plots afforded kinetic parameters, namely, energies of activation E_a, enthalpies of activation ΔH^≠, and entropies of activation ΔS^≠. The ΔG values deduced from kinetic parameters match very well with the ΔG values determined from thermodynamic parameters. In addition, whereas signal coalescence of pyridinium hydrogen atoms located next to the amide bond was observed at 205 K in the oscillating rotaxane and at 203 K in the two‐station rotaxane with a unique location of the macrocycle around the pyridinium amide, no separation of ¹H NMR signals of the considered hydrogen atoms was seen in the corresponding nonencapsulated thread. It is suggested that the macrocycle acts as a molecular brake for the rotation of the pyridinium–amide bond when it interacts by hydrogen bonding with both the amide NH and the pyridinium hydrogen atoms at the same time.     

A macrocycle/molecular-clip complex that functions as a quadruply controllable molecular switch

Herein, we report the synthesis of a molecular clip with TTF side-walls and its binding behavior towards electron-deficient guests, namely the formation of macrocycle/molecular-clip supramolecular complexes in solution. Four different sets of external stimuli--the K(+)/[2.2.2]cryptand, NH(4) (+)/Et(3)N and (p-BrPh)(3)NSbCl(6)/Zn pairs, and heating/cooling cycles-control the movement of this molecular switch between its threaded and unthreaded states and provide color changes that are observable by the naked eye. This macrocycle/molecular-clip complex system can be considered not only as a quadruple-use molecular switch, but can also be operated by three of these stimuli as a three-input molecular NOR-functioning logic gate that may be monitored by UV-visible spectroscopy.     

A molecular mechanics study of the selectivity of crown ethers for metal ions on the basis of their size

A molecular mechanics (MM) analysis is carried out on complexes of crown ethers CH₂(OCH₂CH₂)_nCH₂O, 12-crown-4 (n=3), 15-crown-5 (n=4), 18-crown-6 (n=5), 24-crown-8 (n=7), and 30-crown-11 (n=9) to determine the nature of the selectivity shown by these ligands for metal ions on the basis of metal ion size. The MM program used is SYBYL, and M-O bonds are represented using a covalent model, i.e. the M-O bonds are modelled with ideal M-O bond lengths and force constants. The previously used technique of calculating strain energy as a function of M-O bond length is used for all the complexes, and also the complexes of the non-macrocyclic polyethylene glycol analogues. It is concluded that the crown ethers fall into three groups with regard to selectivity for metal ions. Group one consists of the smaller macrocycles such as 12-crown-4 and 15-crown-5, where metal ions generally are too large to enter the cavity of the macrocycle, and the metal ion is coordinated lying outside the plane of the donor atoms of the ligand. Here factors that control selectivity are the same as in non-macrocyclic ligands, chiefly the size of the chelate ring. Group 2 contains only 18-crown-6 of the ligands studied here. 18-Crown-6 complexes have three important conformers, one of which, theD _3d , shows sharp size match selectivity, preferring metal ions with M-O bond lengths of about 2.9 . The other two conformers are adopted by metal ions too small for theD _3d conformer, and are more flexible, exerting little size-match selectivity. These other two conformers are of higher energy than theD _3d conformer for metal ions with M-O bond lengths greater than 2.55 . Thus, a genuine size match selectivity is found for K⁺ with 18-crown-6. With an ideal M-O bond length of 2.88 , K⁺ fits the cavity of theD _3d conformer of 18-crown-6 very closely. The third group consists of very large macrocycles such as 24-crown-8 and 30-crown-10. These enfold the metal ion in extremely folded conformations, but may, as does 30-crown-10, exert considerable selectivity for metal ions on the basis of their size by virtue of the conformation resulting in a set of torsional angles in the ring atoms of the macrocycle which confer considerable rigidity on the ligand.     

A Molecular Translator that Acts by Binding-Induced DNA Strand Displacement for a Homogeneous Protein Assay

Protein in, DNA out: A "binding-induced molecular translator" is able to convert an input target protein into an output DNA that can be readily detected and potentially be used to assemble DNA nanodevices. Successful molecular translation is mediated by binding-induced DNA assembly on a gold nanoparticle (AuNP) scaffold, thereby achieving efficient target-dependent strand displacement.     

A Molecular Magnet Confined in the Nanocage of a Globular Protein

The effect of confinement and energy transfer on the dynamics of a molecular magnet, known as a model system to study quantum coherence, is investigated. For this purpose the well‐known polyoxovanadate [V₁₅As₆O₄₂(H₂O)]^6? (V₁₅) is incorporated into a protein (human serum albumin, HSA) cavity. Due to a huge overlap of the optical absorption spectrum of V₁₅ with the emission spectrum of a fluorescence center of HSA (containing a single tryptophan residue), energy transfer is induced and probed by steady‐state and time‐resolved fluorescence. The geometrical coordination and the distance of the confined V₁₅ to the tryptophan moiety of HSA are investigated at various temperatures. This effect is used as a local probe for the thermal denaturation of the protein at elevated temperatures.     

4,4′‐Bipyridine as a Unidirectional Switching Unit for a Molecular Pushing Motor

A chirality switch in which the intrinsic chirality of a 4,4′‐bipyridine is combined with a metal‐ion‐induced switching principle is described. In the uncomplexed state the 4,4′‐bipyridine unit, which is linked to an S,S,S,S‐configured cyclic imidazole peptide, is P‐configured. The addition of zinc ions leads to a rotation around the C?C bond axis of the 4,4′‐bipyridine and the M isomer of the metal complex is formed. By addition of a stronger complexing agent the metal ions are removed and the switch returns to its initial position. The combination of the chirality switch with a second switching unit allows the construction of a molecular pushing motor, which is driven chemically and by light.     

Cisplatin Adducts on a GGG Sequence within a DNA Duplex Studied by NMR Spectroscopy and Molecular Dynamics Simulations

The antitumor drug cisplatin (cis‐[PtCl₂(NH₃)₂]) reacts with cellular DNA to form GG intrastrand adducts between adjacent guanines as predominant lesions. GGG sites have been shown to be hotspots of platination. To study the structural perturbation induced by binding of cisplatin to two adjacent guanines of a GGG trinucleotide, we examined here the decanucleotide duplex d[(G₁C₂C₃ G₆T₇‐ C₈G₉C₁₀) ? d(G₁₁C₁₂G₁₃A₁₄C₁₅C₁₆C₁₇G₁₈‐ G₁₉C₂₀)] ( dsCG*G*G ) intrastrand cross‐linked at the G* guanines by cis‐{Pt(NH₃)₂}²⁺ using NMR spectroscopy and molecular dynamics (MD) simulations. The NMR spectra of dsCG*G*G were found to be similar to those of previously characterized DNA duplexes cross‐linked by cisplatin at a pyG*G*X site (py=pyrimidine; X=C, T, A). This similarity of NMR spectra indicates that the base at the 3′‐side of the G*G*–Pt cross‐link does not affect the structure to a large extent. An unprecedented reversible isomerization between the duplex dsCG*G*G (bearing a –Pt chelate) and duplex dsGG*G*T (bearing a –Pt chelate) was observed, which yielded a 40:60 equilibrium between the two intrastrand GG–Pt cross‐links. No formation of interstrand cross‐links was observed. NMR spectroscopic data of dsCG*G*G indicated that the deoxyribose of the 5′‐G* adopts an N‐type conformation, and the cytidines C₃, C₁₅, and C₁₆ have average phase angles intermediate between S and N. The NMR spectroscopic chemical shifts of dsGG*G*T showed some fundamental differences to those of pyG*G*–platinum adducts but were in agreement with the NMR spectra reported previously for the DNA duplexes cross‐linked at an AG*G*C sequence by cisplatin or oxaliplatin. The presence of a purine instead of a pyrimidine at the 5′‐side of the G*G* cross‐link seems therefore to affect the structure of the XG* step significantly.     

A Mechanically Interlocked [3]Rotaxane as a Light‐Harvesting Antenna: Synthesis,Characterization, and Intramolecular Energy Transfer

Mimicking photosynthesis : The concept of light‐harvesting by using a mechanically interlocked [3]rotaxane is developed through synthesis and characterization. Our results provide a new candidate for light‐harvesting systems and also open up the possibility of creating intelligent or controllable energy‐collecting machines (see figure).

     

基于HPPD靶标酶的分子对接研究

对羟基苯丙酮酸双氧化酶(HPPD)是一类新型化学除草剂的重要靶标酶.首先研究了底物小分子与HPPD的对接模型,分析了不同价态铁离子对对接结果的影响,并最终确定铁离子是以二价的方式与底物发生作用.随后,采用类似方法,对文献报道的一系列环己二酮类HPPD抑制剂进行了对接研究,并得到了对接结合自由能与除草活性之间良好的线性关系,其相关性系数达到0.916.这一结果为设计新的HPPD抑制剂提供一定的理论指导.     

A Chiral Molecular Based Metamagnet Prepared from Manganese Ions and a Chiral Triplet Organic Radical as a Bridging Ligand

Below 5.4 K the one-dimensional polymeric complex made up of manganese(II ) hexafluoroacetylacetonate units and bridging bisaminooxylbenzene diradicals (shown in the picture) behaves as a metamagnet. The R-helical chain not only contains an S-configured chiral carbon center, but also an R-configured C₂-symmetric chiral skeleton of the organic ligand.