Statistical properties of nucleotides in human chromosomes 21 and 22

In this paper the statistical properties of nucleotides in human chromosomes 21 and 22 are investigated. The n-tuple Zipf analysis with n = 3, 4, 5, 6, and 7 is used in our investigation. It is found that the most common n-tuples are those which consist only of adenine (A) and thymine (T), and the rarest n-tuples are those in which GC or CG pattern appears twice. With the n-tuples become more and more frequent, the double GC or CG pattern becomes a single GC or CG pattern. The percentage of four nucleotides in the rarest ten and the most common ten n-tuples are also considered in human chromosomes 21 and 22, and different behaviors are found in the percentage of four nucleotides. Frequency of appearance of n-tuple f(r) as a function of rank r is also examined. We find the n-tuple Zipf plot shows a power-law behavior for r < 4ⁿ⁻¹ and a rapid decrease for r > 4ⁿ⁻¹. In order to explore the interior statistical properties of human chromosomes 21 and 22 in detail, we divide the chromosome sequence into some moving windows and we discuss the percentage of ξη (ξ, η = A, C, G, T) pair in those moving windows. In some particular regions, there are some obvious changes in the percentage of ξη pair, and there maybe exist functional differences. The normalized number of repeats N₀(l) can be described by a power law: N₀(l) ∼ l^−μ. The distance distributions P₀(S) between two nucleotides in human chromosomes 21 and 22 are also discussed. A two-order polynomial fit exists in those distance distributions: log P₀(S) = a + bS + cS², and it is quite different from the random sequence.     

Special Functions on the Sphere with Applications to Minimal Surfaces

A function which is homogeneous in x, y, z of degree n and satisfies V_xx + V_yy + V_zz = 0 is called a spherical harmonic. In polar coordinates, the spherical harmonics take the form rⁿf_n, where f_n is a spherical surface harmonic of degree n. On a sphere, f_n satisfies ▵ f_n + n(n + 1)f_n = 0, where ▵ is the spherical Laplacian. Bounded spherical surface harmonics are well studied, but in certain instances, unbounded spherical surface harmonics may be of interest. For example, if X is a parameterization of a minimal surface and n is the corresponding unit normal, it is known that the support function, w = X · n, satisfies ▵w + 2w = 0 on a branched covering of a sphere with some points removed. While simple in form, the boundary value problem for the support function has a very rich solution set. We illustrate this by using spherical harmonics of degree one to construct a number of classical genus-zero minimal surfaces such as the catenoid, the helicoid, Enneper's surface, and Hennenberg's surface, and Riemann's family of singly periodic genus-one minimal surfaces.     

Interpolation by Integer-Valued Polynomials

LetRbe a Krull ring with quotient fieldKanda₁,…,a_ninR. If and only if thea_iare pairwise incongruent mod every height 1 prime ideal of infinite index inRdoes there exist for all valuesb₁,…,b_ninRan interpolating integer-valued polynomial, i.e., anf ∈ K[x] withf(a_i) = b_iandf(R) ⊆ R.IfSis an infinite subring of a discrete valuation ringR_vwith quotient fieldKanda₁,…,a_ninSare pairwise incongruent mod allM^k_v ∩ Sof infinite index inS, we also determine the minimald(depending on the distribution of thea_iamong residue classes of the idealsM^k_v ∩ S) such that for allb₁,…,b_n ∈ R_vthere exists a polynomialf ∈ K[x] of degree at mostdwithf(a_i) = b_iandf(S) ⊆ R_v.     

Matrix characterization of linear codes with arbitrary Hamming weight hierarchy

The support of an [n, k] linear code C over a finite field F_q is the set of all coordinate positions such that at least one codeword has a nonzero entry in each of these coordinate position. The rth generalized Hamming weight d_r(C), 1 ⩽ r ⩽ k, of C is defined as the minimum of the cardinalities of the supports of all [n, r] subcodes of C. The sequence (d₁(C), d₂(C), … , d_k(C)) is called the Hamming weight hierarchy (HWH) of C. The HWH, d_r(C) = n − k + r;  r = 1, 2 , …, k, characterizes maximum distance separable (MDS) codes. Therefore the matrix characterization of MDS codes is also the characterization of codes with the HWH d_r(C) = n − k + r; r = 1, 2, … , k. A linear code C with systematic check matrix [I∣P], where I is the (n − k) × (n − k) identity matrix and P is a (n − k) × k matrix, is MDS iff every square submatrix of P is nonsingular. In this paper we extend this characterization to linear codes with arbitrary HWH. Using this result, we characterize Near-MDS codes, Near-Near-MDS (N²-MDS) codes and A^μ-MDS codes. The MDS-rank of C is the smallest integer η such that d_η+1 = n − k + η + 1 and the defect vector of C with MDS-rank η is defined as the ordered set {μ₁(C), μ₂(C), μ₃(C), … , μ_η(C), μ_η+1(C)}, where μ_i(C) = n − k + i − d_i(C). We call C a dually defective code if the defect vector of the code and its dual are the same. We also discuss matrix characterization of dually defective codes. Further, the codes meeting the generalized Greismer bound are characterized in terms of their generator matrix. The HWH of dually defective codes meeting the generalized Greismer bound are also reported.     

New exact solitary-wave special solutions for the nonlinear dispersive K(m, n) equations

In this paper, we study the nonlinear dispersive K(m, n) equations: u_t + (u^m)_x − (uⁿ)_xxx = 0 which exhibit solutions with solitary patterns. New exact solitary solutions are found. The two special cases, K(2, 2) and K(3, 3), are chosen to illustrate the concrete features of the decomposition method in K(m, n) equations. The nonlinear equations K(m, n) are studied for two different cases, namely when m = n being odd and even integers. General formulas for the solutions of K(m, n) equations are established.     

A semi-Markov process with an inverse Gaussian distribution as sojourn time

Let X_n denote the state of a device after n repairs. We assume that the time between two repairs is the time τ taken by a Wiener process {W(t), t ? 0}, starting from w₀ and with drift μ < 0, to reach c ∈ [0, w₀). After the nth repair, the process takes on either the value X_n?1 + 1 or X_n?1 + 2. The probability that X_n = X_n?1 + j, for j = 1, 2, depends on whether τ ? t₀ (a fixed constant) or τ > t₀. The device is considered to be worn out when X_n ? k, where k ∈ {1, 2, …}. This model is based on the ones proposed by Rishel (1991) [1] and Tseng and Peng (2007) [2]. We obtain an explicit expression for the mean lifetime of the device. Numerical methods are used to illustrate the analytical findings.     

An extended rational interpolation method

To interpolate function, f(x), a ? x ? b, when we have some information about the values of f(x) and their derivatives in separate points on {x₀, x₁, … , x_n} ? [a, b], the Hermit interpolation method is usually used. Here, to solve this kind of problems, extended rational interpolation method is presented and it is shown that the suggested method is more efficient and suitable than the Hermit interpolation method, especially when the function f(x) has singular points in interval [a, b]. Also for implementing the extended rational interpolation method, the direct method and the inverse differences method are presented, and with some examples these arguments are examined numerically.     

Exact special solitary solutions with compact support for the nonlinear dispersive K(m, n) equations

The nonlinear dispersive K(m, n) equations, u_t−(u^m)_x−(uⁿ)_xxx = 0 which exhibit compactons: solitons with compact support, are studied. New exact solitary solutions with compact support are found. The two special cases, K(2, 2) and K(3, 3), are chosen to illustrate the concrete features of the decomposition method in K(m, n) equations. General formulas for the solutions of K(m, n) equations are established.     

Predictions based on the cumulative curves: Basic principles and nontrivial example

In this paper the new prediction method based on analysis of the integrated (cumulative) curves is suggested. This method includes the procedure of the optimal linear smoothing (POLS) for the finding of optimal trends, independent “reading” of relative fluctuations in terms of β-distribution function that are formed after subtraction of the calculated trend and the recognition of the proper fitting hypothesis for the integrated optimal trends by the eigen-coordinates method. The combined noninvasive approach was applied to analysis of temperature data obtained from the site http://data.giss.nasa.gov/gistemp/ related to the global warming (GW) phenomenon. These data are considered as nontrivial examples of verification of new forecasting method. The available data were combined into six files covering the mean/anomalous temperature 1546 month’s points covering the period from the January of 1880 up to October of 2008. Besides the global registered points the combined files included in themselves the north/south data points measured independently for both the Earth’s hemispheres. The combined new method (preliminary verified on mimic data) applied to these files predicts the changing of the GW period by the global cooling (GC) period that will happen during the years 2038–2136. Besides this important result a new method helps to discover the influence of a small but stable oscillating process with a set of self-similar periods Ω_n = Ω₀ξⁿ, n = 0, ±1, ±2, ±3, ±4 with mean period 〈T〉 = 12.55 year. This fact should present interest for ecologists and meteorologists working in this field.     

A Bijective Approach to the Area of Generalized Motzkin Paths

For fixed positive integer k, let E_n denote the set of lattice paths using the steps (1, 1), (1, − 1), and (k, 0) and running from (0, 0) to (n, 0) while remaining strictly above the x-axis elsewhere. We first prove bijectively that the total area of the regions bounded by the paths of E_n and the x-axis satisfies a four-term recurrence depending only on k. We then give both a bijective and a generating function argument proving that the total area under the paths of E_n equals the total number of lattice points on the x-axis hit by the unrestricted paths running from (0, 0) to (n − 2, 0) and using the same step set as above.     

Integrals,Quantum Galois Extensions,and the Affineness Criterion for Quantum Yetter–Drinfel'd Modules

In this paper we shall generalize the notion of an integral on a Hopf algebra introduced by Sweedler, by defining the more general concept of an integral of a threetuple (H, A, C), where H is a Hopf algebra coacting on an algebra A and acting on a coalgebra C. We prove that there exists a total integral γ: C → Hom(C, A) of (H, A, C) if and only if any representation of (H, A, C) is injective in a functorial way, as a corepresentation of C. In particular, the quantum integrals associated to Yetter–Drinfel'd modules are defined. Let now A be an H-bicomodule algebra, ^H$\text{Y}$$\text{D}$_A the category of quantum Yetter–Drinfel'd modules, and B = {a ∈ A|∑S^− 1(a_〈1〉)a_{〈 − 1〉} ⊗ a_〈0〉 = 1_H ⊗ a}, the subalgebra of coinvariants of the Verma structure A ∈ ^H$\text{Y}$$\text{D}$_A. We shall prove the following affineness criterion: if there exists γ: H → Hom(H, A) a total quantum integral and the canonical map β: A ⊗ _B A → H ⊗ A, β(a ⊗ _B b) = ∑S^− 1(b_〈1〉)b_{〈 − 1〉} ⊗ ab_〈0〉 is surjective (i.e., A/B is a quantum homogeneous space), then the induction functor – ⊗ _B A: $\text{M}$_B → ^H$\text{Y}$$\text{D}$_A is an equivalence of categories. The affineness criteria proven by Cline, Parshall, and Scott, and independently by Oberst (for affine algebraic groups schemes) and Schneider (in the noncommutative case), are recovered as special cases.     

Exact solutions for the rotational flow of a generalized Maxwell fluid between two circular cylinders

Unsteady flow of an incompressible generalized Maxwell fluid between two coaxial circular cylinders is studied by means of the Laplace and finite Hankel transforms. The motion of the fluid is produced by the rotation of cylinders around their common axis. The solutions that have been obtained, written in integral and series form in terms of the generalized G_a,b,c(·, t)-functions, are presented as a sum of the Newtonian solutions and the corresponding non-Newtonian contributions. They satisfy all imposed initial and boundary conditions and for λ → 0 reduce to the solutions corresponding to the Newtonian fluids performing the same solution. Furthermore, the corresponding solutions for ordinary Maxwell fluids are also obtained for β = 1. Finally, in order to reveal some relevant physical aspects of the obtained results, the diagrams of the velocity field ω(r, t) have been depicted against r and t for different values of the material and fractional parameters.     

Combinatorial R Matrices for a Family of Crystals: B(1)n,D(1)n,A(2)2n,and D(2)n + 1 Cases

For coherent families of crystals of affine Lie algebras of type B⁽¹⁾_n, D⁽¹⁾_n, A⁽²⁾_2n, and D⁽²⁾_n + 1 we describe the combinatorial R matrix using column insertion algorithms for B, C, D Young tableaux. This is a continuation of previous work by the authors (2000, in “Physical Combinatorics” (M. Kashiwara and T. Miwa, Eds.), Birkhäuser, Boston).     

Equivalent Blocks of Finite General Linear Groups in Non-describing Characteristic

J. Chuang, R. Kessar, and J. Rickard have proved Broué's Abelian defect group conjecture for many symmetric groups. We adapt the ideas of Kessar and Chuang towards finite general linear groups (represented over non-describing characteristic). We then describe Morita equivalences between certain p-blocks of GL_n(q) with defect group C_p^α × C_p^α, as q varies (see Theorem 2). Here p and q are coprime. This generalizes work of S. Koshitani and M. Hyoue, who proved the same result for principal blocks of GL_n(q) when p = 3, α = 1, in a different way.     

On generalized Jordan 1-derivation in rings

Let n ⩾ 1 be a fixed integer and let R be an (n + 1)!-torsion free 1-ring with identity element e. If F, d:R → R are two additive mappings satisfying F(xⁿ⁺¹) = F(x)(x¹)ⁿ + xd(x)(x¹)ⁿ⁻¹ + x²d(x)(x¹)ⁿ⁻²+ ⋯ +xⁿd(x) for all x ∈ R, then d is a Jordan 1-derivation and F is a generalized Jordan 1-derivation on R.     

Pattern Frequency Sequences and Internal Zeros

Let q be a pattern and let S_n, q(c) be the number of n-permutations having exactly c copies of q. We investigate when the sequence (S_n, q(c))_c ≥ 0 has internal zeros. If q is a monotone pattern it turns out that, except for q = 12 or 21, the nontrivial sequences (those where n is at least the length of q) always have internal zeros. For the pattern q = 1(l + 1)l…2 there are infinitely many sequences which contain internal zeros and when l = 2 there are also infinitely many which do not. In the latter case, the only possible places for internal zeros are the next-to-last or the second-to-last positions. Note that by symmetry this completely determines the existence of internal zeros for all patterns of length at most 3.