Electronegativity and chemical hardness of organoelement groups

The experimental approaches to estimation of comparative electronegativity and chemical hardness of organometallic groups have been proposed. Qualitative data on the electronegativity of L _nM groups were obtained from ¹⁹F NMR study of model systems 4‐FC₆H₄QML_n (Q = CC, N(R), O, C(O)O, S), (4‐FC₆H₄)₃ SnML _n and (4‐FC₆H₄)₃SnQML _n (Q = O, S), containing a great variety of different organometallic groups containing transition or heavy main‐group metals. The data on chemical hardness of L _nM groups were obtained from NMR study of distribution of different L _nM groups between hard and soft anions. The following basic results have been obtained. (1) The relative electronegativity and chemical hardness of L _nM groups can change in parallel or not with the electronegativity and hardness of the central metal atom. (2) The substituents in Ar can substantially modify electronegativity and hardness of Ar _nM groups; the influence of Ar groups has an inductive nature; the increase in electron‐donating ability of aryl ligands enhances the hardness of Ar _nM cations. (3) The relative electronegativity and hardness of L _nM groups in L _nMX are invariant and do not depend on X.     

On some ways of modifying semiempirical quantum chemical methods

The problems of semiempirical quantum chemical calculations of (a) spin densities in paramagnetic organometallics, (b) hydrogen bonds, and (c) bond energies and the structure of transition-metal compounds are discussed. Some modifications of the existing semiempirical quantum chemical method are presented. An extended NDDO approximation has been developed. This scheme includes explicit symmetric orthogonalization of the core Hamiltonian and the use of Hellmann's effective core potential for core-electron interaction. © 1996 John Wiley & Sons, Inc.     

Reconsideration of solvent effects calculated by semiempirical quantum chemical methods

AM1 and PM3 semiempirical calculations are reported for the solvent effects on the tautomeric equilibria of 2-pyridone/2-hydroxypyridine and 4-pyridone/4-hydroxypyridine in the gas phase and solution. The solvent effects on the tautomeric equilibria were investigated by self-consistent reaction field (SCRF) theory implemented in the AMPAC and MOPAC program in two different ways: one in which all the solvent relaxation is included in the quantum mechanics and the total energy must be corrected for the solvent change in energy, method A; and a second in which the quantum mechanics directly includes this term, method B. The calculated (AM1, method A) tautomeric equilibrium constants (log K₁) for 2-pyridone in the gas phase, cyclohexane, chloroform, and acetonitrile are ?0.3, 0.3, 0.8, and 1.3, respectively, in good agreement with the experimental data (?0.4, 0.24, 0.78, and 2.17, respectively). For 4-pyridone/4-hydroxypyridine differences between calculated log K₁ for the gas phase, chloroform and acetonitrile (?6.0, ?2.6, and ?1.2, respectively) and experimental data (< ?1, 0.11, and 0.66, respectively) are larger but the experimental values are also less certain. The experimental acetonitrile data are disturbed by specific interactions. An extension of the SCRF for aqueous solutions is reviewed. © 1993 John Wiley & Sons, Inc.     

Incisive structure-spectroscopic correlation in oligothiophenes functionalized with (+/-) inductive/mesomeric fluorine groups: joint Raman and DFT study

This paper presents a combined experimental Raman and density functional theory (DFT) study of a series of oligothiophenes with variable pi-core lengths and substituted at the alpha,omega- and beta,beta'-terminal positions with perfluorohexyl, perfluorohexylcarbonyl, perfluoroarene, and cyano groups. The study covers the neutral and the electrochemically oxidized samples. The spectra have been assigned with the help of B3LYP/6-31G** calculations and interpreted by the predictions of effective conjugation coordinate (ECC) theory. Direct relationships between the bond length alternation (BLA) parameters and the Raman wavenumbers of the two most important bands of the spectra have been outlined showing the collective character of their electronic and vibrational properties. It is found that the topology of the thienyl electronic structure is not uniform along the conjugated core with the external rings more aromatic, whereas for the innermost part the pi-electron delocalization is greater and extends with the increment of chain length. Perfluorohexyl substitution finely tunes the electronic properties via negative inductive effects. The beta,beta' isomers exhibit larger conformational distortion, which strongly modifies the mean conjugation length. Oxidation provokes electronic structure quinoidization spreading over the whole system but more marked in the central part of the pi-core. The Raman features associated to quinoidization in the oxidized species have been interpreted in relation to the oligomer core length and the substitution regiochemistry.     

Application of semiempirical quantum chemical methods as a scoring function in docking

A crucial point in docking simulations is the scoring function used for estimation of the target-ligand interaction energy. The usual practice is to employ fast but simplified empirical scoring functions. Rigorous quantum chemical methods are too slow to screen virtual combinatorial libraries consisting of thousands of molecules, but they can be used in the final step of the simulations for assessing the results obtained. At this stage quantum chemical calculations can be performed only for the 10–100 top binders predicted by simplified scoring functions, and only using linear-scaling semiempirical quantum chemical methods such as MOZYME. The possibilities and potentialities of the quantum chemical methods for estimation of the binding affinities in docking simulations are a largely unexplored area, so the main goal of this study is a detailed evaluation of the potential and limitations of the MOZYME methodology for estimation of the target-ligand binding energies and its comparison with available experimental data.Proceedings of the 11th International Congress of Quantum Chemistry satellite meeting in honor of Jean-Louis Rivail     

Small atomic clusters: quantum chemical research of isomeric composition and physical properties

Structural Chemistry - In this review, we give a brief summary of methodological and computational aspects of determination of structure and different size-dependent properties of small atomic...     

脂肪醇盐离子质子亲和能与量子化学参数的关系

采用半经验量子化学方法（MNDO，AM1和PM3）、从头算（采用STO-3G，3-21G，6-31G，6-31G^*,^6-31G^**,6-311G,6-311G^*和6-311G^**基组）HF方法计算羟基和6种脂肪醇盐离子以获得电子结构数据。通过相关分析发现脂肪醇盐离子中的氧原子净电荷，HOMO能级与质子亲和能之间具有良好的线性的相关性。     

Class IV charge models: A new semiempirical approach in quantum chemistry

Summary We propose a new criterion for defining partial charges on atoms in molecules, namely that physical observables calculated from those partial charges should be as accurate as possible. We also propose a method to obtain such charges based on a mapping from approximate electronic wave functions. The method is illustrated by parameterizing two new charge models called AM1-CM1A and PM3-CM1P, based on experimental dipole moments and, respectively, on AM1 and PM3 semiempirical electronic wave functions. These charge models yield rms errors of 0.30 and 0.26 D, respectively, in the dipole moments of a set of 195 neutral molecules consisting of 103 molecules containing H, C, N and O, covering variations of multiple common organic functional groups, 68 fluorides, chlorides, bromides and iodides, 15 compounds containing H, C, Si or S, and 9 compounds containing C-S-O or C-N-O linkages. In addition, partial charges computed with this method agree extremely well with high-level ab initio calculations for both neutral compounds and ions. The CM1 charge models provide a more accurate point charge representation of the dipole moment than provided by most previously available partial charges, and they are far less expensive to compute.     

Simulating the conditions for the formation of graphene and graphene nanowalls by semiempirical quantum chemical methods

A “substrate-surface graphene island” is simulated by semiempirical quantum chemical methods for different substrates. It is established that such systems with various island sizes correspond to graphene growth on corresponding substrates when CVD is used. Carbon atoms can be incorporated into the island from either the side of the substrate or the side of the CVD reactor exposed to it. It is shown for a wide range of island sizes that the best configuration with respect to the substrate is the structure of a carbon nanowall oriented perpendicular to the substrate. It is emphasized that a transition to this configuration is possible in reality only if CVD is plasma-stimulated when there is a strong near-electrode field near the surface, and the preliminary scission of the carbon carrier material occurs simultaneously in the CVD reactor volume.     

VESPA: A new,fast approach to electrostatic potential-derived atomic charges from semiempirical methods

An improved semiempirical method for computing electrostatic potential-derived atomic charges is described. It includes a very fast algorithm for the generation of the grid points around the molecule and the calculation of the electrostatic potential at these points. The dependency of the atomic point charges obtained on the number of grid points used in the fitting procedure is examined. For “buried” atoms a high density grid is necessary. It is possible to obtain 6–31G*-quality atom-centered point charges, even for phosphorus compounds, using AM1 or PM3. This approach can therefore be recommended for general use in QSAR or molecular mechanics for any organic and bioorganic system up to about 200 atoms. © 1997 by John Wiley & Sons, Inc. J Comput Chem 18: 744–756, 1997     

Reactions of mesomeric fluorocarbanions with acid anhydrides. Transformation of trifluoromethyl groups into fluorocarbonyl and perfluoroacyl groups

It was found that the reaction of mesomeric fluorocarbanions of the CF₃$\text{C}\text{θ}$XCOY type with benzoic anhydride leads to the loss of benzoyl fluoride and the formation of mesomeric carbanions of the FCO$\text{C}\text{θ}$XCOY type. In a similar reaction with perfluorocarboxylic acid anhydrides, besides a CF₃→COF transformation, further change of COF into COR_F is observed, leading to the formation of salts containing mesomeric anions of the R_FCO$\text{C}\text{θ}$XCOY type, which, upon acidification, give 1,1- -bis(perfluoroacyl)-2,2,2-trifluoroethanes CF₃CH(COR_F)₂ , tris- (perfluoroacyl)methanes (R_FCO)₃CH and bis(trifluoroacetyl)- acetic ester (CF₃CO)₂CHCOOMe. It has been shown that perfluoroalkyl groups in β-diketones and β,β′-triketones may hinder enolization despite their electron-attracting effect.     

Some quantum chemical aspects of solvent effects on NMR parameters

The non-bonded interactions which occur between solute and solvent molecules are discussed and the various models which describe the interactions are presented. The models are employed, within a quantum chemical framework, to estimate the extent of medium effects on chemical shifts and spin-spin couplings. Comparison between the calculated and available experimental data is provided for some first row nuclei.