脯氨酸与Cu、Cu+和Cu2+配位体系的计算研究

运用M06-2X和ωB97XD方法分别在6-311++G（2d,p）和TZVP基组水平上,对脯氨酸（Pro）的15种构象与Cu、Cu⁺和Cu²⁺形成的多种配合物的几何结构、能量学特征、振动光谱和电子结构等进行计算研究. 四种水平得到20种[Pro-Cu]、16种[Pro-Cu]⁺和16种[Pro-Cu]²⁺稳定结构. [Pro-Cu]和[Pro-Cu]⁺体系中出现12种Pro构象,而[Pro-Cu]²⁺体系中出现11种Pro构象,三种体系中最稳定的结构都不是由能量最低的Pro构象生成的. 在结构CI3、CI4、CII7和CII8中,Pro的羧基氢转移到亚氨基氮形成两性离子与Cu双配位结合. [Pro-Cu]^0/1+/2+体系四种水平计算相对能差范围逐渐增加,结合能分别在-60.0 --5.0 kJ·mol^-1、-340.0 --170.0 kJ·mol^-1和-1100.0 --860.0 kJ·mol^-1范围,配位体系中Pro的变形能逐渐增加. N―H和O―H键伸缩振动频率普遍发生红移,配位体系中部分电荷从Pro转移到Cu上,在[Pro-Cu]²⁺体系中单配位结构中电荷转移最多,约为单位负电荷.     

银离子配位萃取银杏叶中多萜长链化合物的研究

本文建立了银杏叶中多萜长链化合物Ag⁺配位萃取方法，构筑了含Ag⁺配位萃取体系。研究了萃取剂极性、萃取温度、Ag⁺浓度等因素对分配比D的影响，分析测定了银杏叶聚戊烯醇(PPs)与Ag⁺的配位萃取比m，确定了配位萃取条件及解离条件。试验结果表明，所建立的含Ag+配位萃取剂用于分离浓缩聚戊烯类化合物选择性好、效率高，萃取剂再生方法简便。     

铜转运蛋白C端金属结合域与Ag+及Hg2+的相互作用

铜转运蛋白(CTR1)不仅参与铜的细胞摄取,而且在其它重金属离子的摄取过程中也发挥重要作用. 本文采用紫外-可见(UV-Vis)光谱,核磁共振(NMR)和质谱(MS)的方法,研究了人源CTR1 (hCTR1)的C端金属结合域(C8)与Ag⁺和Hg²⁺的相互作用. 研究表明,Ag⁺和Hg²⁺都能与C8结合,但二者与C8的结合机制明显不同. 每个C8分子可以结合两个Ag⁺离子,但一个Hg²⁺却可以与两个C8形成桥联. 此外,Ag⁺离子与C8的配位是一个中等速度的交换过程,而Hg²⁺离子则为快速交换过程. C8的半胱氨酸残基是两种离子的重要结合位点,同时组氨酸残基也参与两种金属离子的配位,其中Ag⁺优先结合组氨酸,而Hg²⁺则对半胱氨酸的结合具有显著的优势. 虽然HCH基序对C8 与金属配位至关重要,一些远端的其它氨基酸也可以参与C8 与银离子的配位,这可能与CTR1 在摄取Ag⁺过程中的金属转移机制相关. 这些结果为理解hCTR1 蛋白摄取重金属离子的作用机制提供了必要的信息.     

手性氮磷配体与钌的配位过程的研究—原位变温 31P核磁及分子模拟计算

用原位变温 ³¹P NMR和分子模拟研究了手性氮磷配体与金属钌的配位过程。首先确定了配体及其与金属的配合物的化学位移信号分别在δ=-13.0ppm和δ=48.2ppm。配位过程在293～343K温度范围内,相继生成四配位和五配位中间体。四配位体在 ³¹P NMR上对应于30.8ppm和-15.0ppm的两个信号;五配位中间体对应于35.1ppm和-16.5ppm的两个信号;最后在343K,产物中只有六配位的配合物存在,其信号出现在48.2ppm。为了得到各种中间体的结构,用分子模拟方法进行了结构优化计算,并比较了它们的构象能。计算结果表明,四配位中间体有两种构象,能量相差9kcal·mol^-1,它们可能同时存在于平衡状态。而五配位中间体只有一种绝对优势构象,尚有一个磷原子未参与配位。六配位的钌金属配合物的结构优化结果显示,两个氯原子分别位于PNNP原子所构成平面的两侧。其构象能为162.0kcal·mol^-1,其中键角能的贡献是112.5kcal·mol^-1,而非键静电作用是-41.4kcal·mol^-1,这表明分子内的静电吸引力对于形成完全配位产物是十分有利的,但是收敛的配体分子却承受了较大的键角张力。     

阴离子调控的含反式-双(苯甲酰丙酮)-1,4-环己二胺银配位聚合物的合成、晶体结构及其荧光性质

将配体反式-双(苯甲酰丙酮)-1,4-环己二胺(L)与AgX(X=NO₃^-,BF₄^-,SbF₆^-,ClO₄^-)进行反应得到4个配合物{[Ag(L)]NO₃}_n(1),{[Ag(L)(H₂O)]BF₄}_n(2),{[Ag₂(L)₃](SbF₆)₂}_n(3),{[Ag(L)]ClO₄}_n(4),并用元素分析,红外和X-射线单晶衍射表征了4个配合物的结构。在固体状态下,配合物1和2都形成2D网状结构的配位聚合物,都有2个不同配位类型的配体,不同的是,配合物1中桥连配体的1,4-环己二胺1,4位的C-N键在直立键上,而配合物2中桥连配体的1,4-环己二胺中1,4位的C-N键在平伏键上;配合物3也有2种不同配位类型的配体,但是与配合物1和2不同,配合物3形成1D配位聚合物;配合物4中的配体只有一种配位类型,配合物4形成2D网状结构。4个配合物中,配合物2,3的阴离子未参与Ag(Ⅰ)配位,配合物1和1的阴离子与Ag(Ⅰ)配位。同时,研究了配体和配合物在室温下的固态荧光性质。     

一种基于硫杂杯[4]芳烃的高效银离子载体

合成了基于下缘含有酰肼基团的硫杂杯芳烃衍生物的银离子载体1,其核磁研究证实硫杂杯芳烃以1,3-交替构象存在,并且通过非竞争萃取实验和竞争萃取实验研究了它对碱金属和过渡金属离子（Li⁺, Na⁺, K⁺, Cs⁺, Co²⁺, Ni²⁺, Cu²⁺, Zn²⁺ and Ag⁺）的键合能力和选择性。实验结果表明：将酰肼基团引入1,3-交替构象的硫杂杯芳烃骨架的下缘可以提高其对Ag⁺的键合能力和选择性,同时,对Cu²⁺的萃取能力较弱,对碱金属离子和其它的重金属离子几乎没有萃取能力。进一步的核磁滴定和电喷雾质谱实验显示化合物1与银离子形成配合物的配合计量比为1：1,由此推断主要由“N-Ag⁺”配位键以及硫杂杯芳烃骨架的协同作用构成了化合物1与银离子的配合模式。     

金(I)配合物催化乙烯加氢的反应机理

采用密度泛函理论B3LYP方法, 对两类金(I)配合物AuX (X=F, Cl, Br, I)和AuPR₃⁺(R=F, Cl, Br, I, H, Me,Ph)催化C₂H₄加氢反应的机理进行了理论研究. 计算显示Au(I)配合物对C₂H₄氢化具有较好的催化效果, 其作用下的加氢反应存在“活化H―H键后再与C₂H₄反应”和“活化C＝C键后再与H₂反应”两种途径, 前者的活化能较后者低90-120 kJ·mol^-1, 因而具有明显的能量优势. 研究表明AuPR₃⁺ 的催化能力明显强于AuX. 此外, X/PR3基团供、吸电子能力的变化对配合物的催化能力也具有较为显著的影响. 电子结构分析显示Au(I)配合物在C₂H₄ 加氢反应中不仅能够削弱H―H、C＝C 键的强度, 还使H₂ σ_H―H^*、C₂H₄ π_C＝C^* 轨道能级下降, 从而缩小了π_C＝C-σ_H―H^*或σ_H―H-π_C＝C^*轨道间的能级差, 促进了C₂H₄-H₂反应中的电子离域, 从而降低禁阻反应发生的难度.σ_H―H^*、π_C＝C^*轨道能级改变量与加氢反应活化能E_a的降低值之间存在较好的一致性关系, 因此使上述轨道能级下降幅度越大的Au(I)配合物可以获得较好的催化效果.     

糠醛在Pt(111)表面的吸附和脱碳反应

采用广义梯度近似的密度泛函理论并结合平板模型的方法, 优化了糠醛分子在Pt(111)面的吸附模型,并探究了糠醛脱碳反应形成呋喃的机理. 结果表明: 吸附后糠醛分子环上的C―H(O)键及支链―CHO相对于金属表面倾斜上翘, 分子平面被扭曲, 易于呋喃的形成; 同时, 糠醛分子向Pt表面转移电子0.765e, 环中的大π键与Pt(111)表面的d轨道发生较强的相互作用, 使得糠醛的芳香性被破坏, 环上的碳原子呈现准sp³杂化. 此外, 对糠醛脱碳反应中的各反应步骤进行过渡态搜索, 通过比较各步骤的活化能, 得出糠醛更易先失去支链上的H形成酰基中间体(C₄H₃O)CO, 中间体继续脱碳加氢形成产物呋喃. 该过程的控速步骤为(C₄H₃O)CO^*+^*→C₄H₃O^*+CO^* (^*为吸附位),活化能为127.65 kJ·mol^-1.     

阴离子调控的含反式-双(苯甲酰丙酮)-1,4-环己二胺银配位聚合物的合成、晶体结构及其荧光性质

将配体反式-双(苯甲酰丙酮)-1,4-环己二胺(L)与AgX(X=NO₃^-, BF₄^-, SbF₆^-, ClO₄^-)进行反应得到4个配合物{[Ag(L)]NO₃}_n(1), {[Ag(L)(H₂O)]BF₄}_n(2), {[Ag₂(L)₃](SbF₆)₂}_n(3), {[Ag(L)]ClO₄}_n(4),并用元素分析,红外和X-射线单晶衍射表征了4个配合物的结构。在固体状态下,配合物1和2都形成2D网状结构的配位聚合物,都有2个不同配位类型的配体,不同的是,配合物1中桥连配体的1,4-环己二胺1,4位的C-N键在直立键上,而配合物2中桥连配体的1,4-环己二胺中1,4位的C-N键在平伏键上;配合物3也有2种不同配位类型的配体,但是与配合物1和2不同,配合物3形成1D配位聚合物;配合物4中的配体只有一种配位类型,配合物4形成2D网状结构。4个配合物中,配合物2,3的阴离子未参与Ag(Ⅰ)配位,配合物1和4的阴离子与Ag(Ⅰ)配位。同时,研究了配体和配合物在室温下的固态荧光性质。     

Ga/HZSM-5分子筛上乙烯二聚反应的理论研究

应用理论计算方法研究了Ga/HZSM-5及Al/HZSM-5 分子筛上乙烯二聚生成1-丁烯的反应历程, 比较了分子筛酸性对反应能量的影响. 计算采用分为两层的76T簇模型, 应用量子力学和分子力学联合的 ONIOM2 (B3LYP/6-31G(d, p):UFF) 方法. 乙烯二聚过程可按照分步机理和协同机理进行, 均得到表面丁基烷氧中间产物. 计算结果表明, 与在Al/HZSM-5分子筛上的反应过程相比, 乙烯在 Ga/HZSM-5分子筛上的吸附能低 20.62 kJ·mol^-1, 但质子化反应的活化能只高出1.26 kJ·mol^-1; 而乙基烷氧中间体与乙烯分子结合过程的活化能高出 62.55 kJ·mol^-1, 原因是Ga 原子半径大, 降低了六元环过渡态的稳定性. 若按协同机理, 质子转移和C―C键聚合同时进行, 在 Ga/HZSM-5分子筛上的活化能较Al/HZSM-5的高16.44 kJ·mol^-1. 因此乙烯二聚按照协同机理有利. 研究还表明, 表面丁基烷氧中间体脱质子, 生成1-丁烯并吸附在复原的分子筛酸性位上. 该反应在两种酸中心上的活化能几乎相同, 但明显高于其他各步的活化能, 因此成为整个反应的速度控制步骤.     

脯氨酸与Zn~(2+/1+/0)相互作用及性质

运用M062X和X3LYP两种密度泛函理论(DFT)方法在TZVP和6-311++G(2d,p)+LANL2DZ基组水平上,对已报道的15种脯氨酸(Pro)构象分别与Zn2+、Zn+及Zn进行不同方式配位体系的几何结构、能量学特征、振动光谱和电子结构性质进行了计算研究.Pro-Zn2+、Pro-Zn+和Pro-Zn三种体系分别得到19、21和24种稳定结构.Pro-Zn2+体系中Zn2+与Pro两性离子的氧端(OO)配位形成的四元环结构能量最低,其次是与Pro羧羰基氧和亚氨基氮配位形成的五元环结构,而Pro-Zn+体系与之相反.Pro-Zn2+/1+/0体系的相对能差逐渐降低,结合能分别位于-620--936,-139--325和-1.5--22 kJ·mol-1范围,配位Pro的变形能随价态降低而减小.ProZn2+体系受方法和基组影响较大,离子体系中Zn均获得少量负电荷,所有配位化合物的前线轨道能差均比相应两个碎片要低.     

脯氨酸与Cu、Cu~+和Cu~(2+)配位体系的计算研究

运用M06-2X和ωB97XD方法分别在6-311++G(2d,p)和TZVP基组水平上,对脯氨酸(Pro)的15种构象与Cu、Cu+和Cu2+形成的多种配合物的几何结构、能量学特征、振动光谱和电子结构等进行计算研究.四种水平得到20种[Pro-Cu]、16种[Pro-Cu]+和16种[Pro-Cu]2+稳定结构.[Pro-Cu]和[Pro-Cu]+体系中出现12种Pro构象,而[Pro-Cu]2+体系中出现11种Pro构象,三种体系中最稳定的结构都不是由能量最低的Pro构象生成的.在结构CI3、CI4、CII7和CII8中,Pro的羧基氢转移到亚氨基氮形成两性离子与Cu双配位结合.[Pro-Cu]0/1+/2+体系四种水平计算相对能差范围逐渐增加,结合能分别在-60.0--5.0 kJ·mol-1、-340.0--170.0 kJ·mol-1和-1100.0--860.0 kJ·mol-1范围,配位体系中Pro的变形能逐渐增加.N―H和O―H键伸缩振动频率普遍发生红移,配位体系中部分电荷从Pro转移到Cu上,在[Pro-Cu]2+体系中单配位结构中电荷转移最多,约为单位负电荷.     

Thermodynamic stability and electron structure of polymeric sandwich complexes of porphyrins with different metals

The thermodynamic stability of different conformers of the polymeric sandwich structures of metalloporphyrins (MeP) is studied by means of quantum chemistry. The possibility of forming stable layered BaP, SrP, ScP, YP, and ZrP structures with shielded and retarded conformation is demonstrated. Shielded conformers are preferable in the case of SrP, BaP, and ScP complexes, while retarded conformers are most advantageous for YP and ZrP complexes. Based on the results from calculating the electron structure of the investigated compounds, we find that SrP and BaP are semiconductors and ScP, YP, and ZrP are electrical conductors     

脯氨酸的构象及性质

用X3LYP法在6-311++G(d, p)和6-311++G(3df, 3pd)基组水平上对脯氨酸15种构象的几何结构、相对能量、电子结构、红外光谱、偶极矩、极化率等性质进行了研究, 并与PBE1PBE/6-311++G(d, p)的结果和文献相比较, 从而得到: (1) 的脯氨酸的15种构象中能量最低的有4种, 不同构象中存在着强弱不同的5种氢键, 其中以N…H—O氢键最强, 并存在特殊的C—H…O=C氢键. 两种方法计算的几何结构数据相近, 均与实验值吻合; (2) 在构象相对能差计算方面, X3LYP具有明显的优势, 用中等基组就可以得到与高水平从头算法和大基组相同的结果, 而PBE1PBE法计算的相对能值则相差较大; (3) 脯氨酸不同构象中偶极矩最大和极化率最小的是最稳定的构象1和2, 两种方法计算的结果一致.     

Investigation on transition States of [Alanine + M2+] (M = Ca,Cu, and Zn) complexes: A quantum chemical study

The ground state geometries of [Alanine (Ala) + M²⁺] [M = Ca, Cu, and Zn) complexes were calculated in gas phase at B3LYP/6‐311++G(d,p) level of theory. Transition states (TSs) between different stable conformers of [Ala + M²⁺] complexes were also calculated. Among the different [Ala + M²⁺] complexes, the complex where metal cations coordinated to carboxylate group (? COO^?) is found to be energetically most favorable. To calculate TSs, the ground state structures of any two conformers of [Ala + M²⁺] complexes were used. The ground state energies of two stable conformers and their TS structures were used to calculate the activation energy. The reactivity of different conformers of [Ala + M²⁺] complexes have been discussed in terms of energy difference between their highest occupied molecular orbital and lowest unoccupied molecular orbital. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2012     

Preparations of Tris(Triphenylphospnine)copper and Tris(triphenylphosphine)silver Complexes of Phenalenone,Diphenylcyclopropenone and Tropone

The tris(triphenylphosphine)copper and tris(triphenylphosphine)silver complexes of phenalenone 4 , diphenylcyclopropenone 5 and tropone 6 were prepared by treating tris(triphenylphosphine)copper tetrafloroborate 2 and tris(triphenylphosphine)silver tetrafluoroborate 3 with basic ketones 4, 5 and 6 in high yields. All these complexes are stable in either air or moisture, and soluble in common organic solvents such as dichloromethane and chloroform.     

Experimental and theoretical study of the structures and binding energies of eugenol (H2O)n, n=0-2

Eugenol (4-Allyl-2-methoxyphenol), a phenol-derivative with an intramolecular -OH ...OCH(3) hydrogen bond (H bond), has been studied in a supersonic expansion using a number of complementary laser spectroscopic techniques. The mass-resolved excitation spectrum of eugenol and its water complexes are reported for the first time. The most intense set of bands on the resonantly enhanced multiphoton ionization (REMPI) spectrum of eugenol originate in a conformer whose S(1)<--S(0) transition is at 35 202 cm(-1) and the ionization threshold at (I(0)<--S(0)) 62 544+/-150 cm(-1) (7.755+/-0.019 eV). In addition, two low intensity features redshifted with respect to the 0(0) (0) transition have been identified as due to a second, less stable conformer. Ab initio calculations show that the potential energy landscape depicts at least three minima associated with one folded and two extended conformers, one of which is the most stable. Clusters of eugenol/water were prepared in a supersonic expansion by seeding eugenol and water in noble gas He and examined by two-color REMPI (R2PI) and IR-UV double resonance spectroscopies. Only one single isomer was observed for both 1:1 and 1:2 complexes, in contrast with the several stable conformers provided by the computations. The dissociation energies of the 1:1 and 1:2 complexes have been determined by the fragmentation threshold method and the results compared with those from ab initio calculations conducted at the B3LYP and MP2 levels with a variety of basis sets.     

A Theoretical Study of the Interaction Between Cytosine and BX<Subscript>3</Subscript> (X = F,Cl) Systems

The B3LYP method of DFT and HF theories of ab initio with 6-311+G^** basis sets were used to predict the geometries of the cytosine-BX₃ (X,=F, Cl) complex systems. Four conformers were obtained with no imaginary frequencies, respectively. The binding energies, enthalpies and Gibbs energies of cytosine-BX₃ have been obtained. The analyses of the combinations between cytosine and BX₃ using the natural bond orbital (NBO) method and thermodynamics indicate that the complexes (a) and (e), which depend on the proton affinities of the oxygen on the cytosine and boron in BX₃, are the most stable ones with their combination energies of −234.21 and −228.23 kJ.mol⁻¹ (B3LYP method, BSSE corrected). Based on the calculation results, a reasonable method was employed to calculate the change in the enthalpies and Gibbs energies to form eight complexes in the gaseous state at 298.15K and 101.325 kPa. It can be shown that the conformers (a) and (e) are the most stable and form readily.     

Influence of the conformers of the ligand 2-methylamino-1-phenylpropan-1-ol (HA) in the complexes (H<Subscript>2</Subscript>A)<Subscript>2</Subscript>[PdCl<Subscript>4</Subscript>] on their state in solutions and their biological activity

The systems Pd(II)-Cl^?-HA-H₂O (where HA are the conformers of 2-methylamino-1-phenylpropan-1-ol) were studied. The acid dissociation constants of the ligands HA and the resulting complexes were determined by pH-metric titration and mathematical modeling. The pH-distribution diagram of the complex species in the system containing different HA conformers was obtained. The complexes (H₂A)₂[PdCl₄] were obtained and structurally characterized; their toxicity and radioprotective effects were estimated. The biological activity of the complexes was found to depend on both the ligand basicity and the hydrogen bonding system formed by different conformers of the ligand in the cation-anion complexes.