On the mechanism of hydrogen transfer in the HSCH(O) <--> (S)CHOH and HSNO <--> SNOH reactions

The 1,3-intramolecular hydrogen transfer in the HSCH(O) <--> (S)CHOH and HSNO <--> SNOH reactions is studied through density functional theory calculations. The reaction force together with structural and electronic properties is monitored along the reaction path to characterize the mechanism of hydrogen transfer. It is found that in both reactions the hydrogen transfer is activated by the structural rearrangement of the backbone atoms that allow the electrostatic interactions to promote the hydrogen transfer in a stepwise mechanism.     

Au <--> N synergy and N-doping of metal oxide-based photocatalysts

N-doping of titania makes photocatalytic activity possible for the splitting of water, and other reactions, under visible light. Here, we show from both theory and experiment that Au preadsorption on TiO2 surfaces significantly increases the reachable amount of N implanted in the oxide. The stabilization of the embedded N is due to an electron transfer from the Au 6s levels toward the N 2p levels, which also increases the Au-surface adhesion energy. Theoretical calculations predict that Au can also stabilize embedded N in other metal oxides with photocatalytic activity, such as SrTiO3 and ZnO, producing new states above the valence band or below the conduction band of the oxide. In experiments, the Au/TiN(x)O(2-y) system was found to be more active for the dissociation of water than TiO2, Au/TiO2, or TiO(2-y). Furthermore, the Au/TiN(x)O(2-y) surfaces were able to catalyze the production of hydrogen through the water-gas shift reaction (WGS) at elevated temperatures (575-625 K), displaying a catalytic activity superior to that of pure copper (the most active metal catalysts for the WGS) or Cu nanoparticles supported on ZnO.     

Time-dependent reactive scattering for the system H- + D2 <--> HD + D- and comparison with H- + H2 <--> H2 + H-

This work presents results of quantum mechanical calculations of reaction probabilities for the ion-neutral molecule collisions H- + D2 <--> HD + D-. Time-dependent wave packet propagations for total angular momentum J not equal to 0, including the full Coriolis coupling, are performed. The calculated state-to-state reaction probabilities using product Jacobi coordinates are compared with energy-resolved reaction probabilities calculated with the flux-operator using reactant Jacobi coordinates and with time-independent calculations. Differences between nearly converged integral cross sections and those using the J-shifting method and centrifugal sudden approximation and comparison with experimental results will be presented.     

Quantum-admixture model of high-spin <--> low-spin transition for ferrous complex molecules

A quantum-admixture model for the d(6) configuration ferrous complex molecules with the high-spin <--> low-spin transition has been established by using the unified crystal-field-coupling (UCFC) scheme. A general study has been made on the spin transition of octahedrally coordinated d(6) complexes, and a special application has been given to an Fe(II) compound Fe(II)(TRIM)(2)(PhCO(2))(ClO(4)). The results show the following: (i) The quantum picture of the spin transition of a d(6) system, such as Fe(II), is much more complex than a simple transition between the pure (5)T(2g) and (1)A(1g) states as usually understood. In practice, owing to spin-orbit coupling, spin is no longer a good quantum number and there is no longer a pure (5)T(2g) or (1)A(1g) state. Each of them splits into substates and each substate is a linear combination of various multiplets. The high-spin --> low-spin transition of an octahedrally coordinated d(6) ion is practically the crossover of the two lowest substates of (5)T(2g) at the critical point. (ii) At the spin-transition critical point the magnetic moment mu(eff) approximately 5.22 mu(B), which is obviously different from the simple average of the mu(eff) values of high-spin and low-spin states but near the saturation value. (iii) The calculation of the effective molecular magnetic moment mu(eff) for an octahedrally coordinated Fe(II) ion shows that the mu(eff)-T curve is in good agreement with Lemercier et al.'s experiment and both the low-spin value mu(eff) = 0.51 mu(B) and the high-spin value mu(eff) = 5.4 mu(B) are comparable with the experimental values 0.76 mu(B) and 5.4 mu(B), respectively. (iv) The T dependence of the crystal field parameter Dq in the spin-transition region is approximately linear.     

2-hydroxypyridine <--> 2-pyridone tautomerization: catalytic influence of formic acid

A 1:1 hydrogen-bonded complex between 2-pyridone and formic acid has been characterized using laser-induced-fluorescence excitation and dispersed fluorescence spectroscopy in a supersonic jet expansion. Under the same expansion condition, the fluorescence signal of the tautomeric form of the complex (2-hydroxypyridine...formic acid) is absent, although both the bare tautomeric molecules exhibit well-resolved laser-induced-fluorescence spectra. Quantum chemistry calculation at the DFT/B3LYP/6-311++G** level predicts that in the ground electronic state the activation barrier for tautomerization from hydroxy to keto form in bare molecules is very large (approximately 34 kcal/mol). However, the process turns out to be nearly barrierless when assisted by formic acid, and double proton transfer occurs via a concerted mechanism.     

Length dependence of the coil <--> beta-sheet transition in a membrane environment

The most abundant structural element in protein aggregates is the beta-sheet. Designed peptides that fold into a beta-sheet structure upon binding to lipid membranes are useful models to elucidate the thermodynamic characteristics of the random coil <-->beta-structure transition. Here, we examine the effect of strand length on the random coil <--> beta-sheet transition of the (KIGAKI)n peptide with the total chain length varying between 7 and 30 amino acids. The beta-sheet content of the peptides in the presence and absence of membranes was measured with circular dichroism spectroscopy. The peptides were titrated with small unilamellar lipid vesicles, and the thermodynamic binding parameters were determined with isothermal titration calorimetry (ITC). Membrane binding includes at least two processes, namely (i) the transfer of the peptide from the aqueous phase to the lipid surface and (ii) the conformational change from a random coil conformation to a beta-sheet structure. CD spectroscopy and ITC analysis demonstrate that beta-sheet formation depends cooperatively on the peptide chain length with a distinct increase in beta-structure for n > 10-12. Binding to the lipid membrane is an entropy-driven process as the binding enthalpy is always endothermic. The contribution of the beta-sheet folding reaction to the overall process was determined with analogues of the KIGAKI repeat where two adjacent amino acids were replaced by their D-enantiomers. The folding reaction for peptides with n >or= 12 is characterized by a negative free folding energy of DeltaG(degree)beta approximately equal -0.15 kcal/mol per amino acid residue. The folding step proper is exothermic with DeltaH(degree)(beta) approximately equal -0.2 to -0.6 kcal/mol per residue and counteracted by a negative entropy term TDeltaS(degree)(beta) = -0.1 to -0.5 kcal/mol per residue, depending on the chain length (18 相似文献   

Quantum mechanical rate constants for H + O2 <--> O + OH and H + O2 --> HO2 reactions

Canonical rate constants for both the forward and reverse H + O(2) <--> O + OH reactions were calculated using a quantum wave packet-based statistical model on the DMBE IV potential energy surface of Varandas and co-workers. For these bimolecular reactions, the results show reasonably good agreement with available experimental and theoretical data up to 1500 K. In addition, the capture rate for the H + O(2) --> HO(2) addition reaction at the high-pressure limit was obtained on the same potential using a time-independent quantum capture method. Excellent agreement with experimental and quasi-classical trajectory results was obtained except for at very low temperatures, where a reaction threshold was found and attributed to the centrifugal barrier of the orbital motion.     

Theoretical study of the enol imine <--> enaminone tautomeric equilibrium in organic solvents

The tautomeric enol imine <--> enaminone (phenol <--> quinone) equilibrium of the 1-hydroxy-2-naphthaldehyde Schiff base (2-phenyliminomethyl-naphthalen-1-ol) was investigated by density functional theory (B3LYP) and ab initio (MP2) methods in the IEF-PCM polarizable continuum dielectric solvent approximation and by a combined ab initio + FEP/MC study by considering an explicit solvent model. Special emphasis was put on the effect of solvation on this equilibrium by using an apolar (CCl4), polar aprotic (CH3CN), and polar protic (CH3OH) solvent. Compared with experimental tautomerization Gibbs free energies, the IEF-PCM/B3LYP calculations apparently overestimate the stability of the quinone form both when the 6-31G(d,p) and the 6-311++G(d,p) basis sets are applied. IEF-PCM/MP2 studies with the above basis sets predict the preference of the aromatic phenol tautomer, in contrast to the experiment in methanol and acetonitrile solvent. Calculation of the total relative free energy as DeltaG(tot) = DeltaE(int)(IEF-PCM/QCISD(T)/6-31G(d)) + DeltaG(solv, FEP/MC) + DeltaG(thermal) provided agreement with the experimental values up to 0.6 kcal/mol in the three solvents, and the predominant tautomer was always correctly predicted. In-solution relevant atomic charges, derived by a fit to the molecular electrostatic potential generated by the IEF-PCM/B3LYP/6-31G(d,p) wave function, show strong dependence on the fitting procedure (CHELPG or RESP) and are fairly insensitive to the chemical nature of the actual solvent. Use of the CHELPG charges in FEP/MC simulations revealed to be superior in comparison with the use of the RESP charge set.     

Application of unsymmetrical indirect covariance NMR methods to the computation of the (13)C <--> (15)N HSQC-IMPEACH and (13)C <--> (15)N HMBC-IMPEACH correlation spectra

Utilization of long-range (1)H--(15)N heteronuclear chemical shift correlation has continually grown in importance since the first applications were reported in 1995. More recently, indirect covariance NMR methods have been introduced followed by the development of unsymmetrical indirect covariance processing methods. The latter technique has been shown to allow the calculation of hyphenated 2D NMR data matrices from more readily acquired nonhyphenated 2D NMR spectra. We recently reported the use of unsymmetrical indirect covariance processing to combine (1)H--(13)C GHSQC and (1)H--(15)N GHMBC long-range spectra to yield a (13)C--(15)N HSQC-HMBC chemical shift correlation spectrum that could not be acquired in a reasonable period of time without resorting to (15)N-labeled molecules. We now report the unsymmetrical indirect covariance processing of (1)H--(13)C GHMBC and (1)H--(15)N IMPEACH spectra to afford a (13)C--(15)N HMBC-IMPEACH spectrum that has the potential to span as many as six to eight bonds. Correlations for carbon resonances long-range coupled to a protonated carbon in the (1)H--(13)C HMBC spectrum are transferred via the long-range (1)H--(15)N coupling pathway in the (1)H--(15)N IMPEACH spectrum to afford a much broader range of correlation possibilities in the (13)C--(15)N HMBC-IMPEACH correlation spectrum. The indole alkaloid vincamine is used as a model compound to illustrate the application of the method.     

Uracil–4-Hydroxyuracil tautomerism revisited

The tautomerism of the uracil-4-hydroxyuracil system is examined with the 3–21G basis set and full geometry optimization using gradient techniques. Single-point calculations at the 6-31G level were also done and the results compared with the 2-pyridone–2-hydroxypyridine system. The best ΔE(taut) obtained in this work is 74.1 kJ/mol.     

Electronic spectroscopy of the A1A" <--> X1A' system of CDBr

We report fluorescence excitation and single vibronic level emission spectra of jet-cooled CDBr in the 450-750 nm region. A total of 32 cold bands involving the pure bending levels 2(0)n with n=3-10 and combination bands 2(0)n3(0)1 (n=2-10), 2(0)n3(0)2 (n=2-9), 1(0)(1)2(0)n (n=7-10), and 1(0)(1)2(0)n3(0)(1) (n=6,8-9) in the A1A" <-- X1A' system of this carbene were observed; most of these are reported and/or rotationally analyzed here for the first time. Rotational analysis yielded band origins and effective (B) rotational constants for both bromine isotopomers (CD79Br and CD81Br). The derived A1A" vibrational intervals are combined with results of Yu et al. [J. Chem. Phys. 115, 5433 (2001)] to derive barriers to linearity for the 2n, 2n3(1), and 2n3(2) progressions. The A1A" state C-D stretching frequency (2350 cm(-1)) is determined for the first time, in excellent agreement with theory, as are the 79Br-81Br isotope splittings in the excited state. Our emission spectra probe the vibrational structure of the X1A' and a3A" states up to approximately 9000 cm(-1) above the vibrationless level of the X1A' state; the total number of levels observed is around twice that previously reported. Unlike CHBr, where even the lowest bending levels are perturbed by spin-orbit interaction with the triplet origin, the term energy of every level save one below 3000 cm(-1) in CDBr is reproduced by a Dunham expansion to within a standard deviation of 1 cm(-1), and a spin-orbit coupling matrix element of approximately 330 cm(-1) is derived from a deperturbation analysis of the triplet origin. The multireference configuration interaction (MRCI) calculations of Yu et al. [J. Chem. Phys. 115, 5433 (2001)] well reproduce triplet perturbations in the pure bending manifold, and globally, the vibrational frequencies of X1A', a3A", and A1A" are in excellent agreement with theoretical predictions.     

Enantioselective <Emphasis Type="Italic">O</Emphasis>-allylic alkylation of Morita-Baylis-Hillman carbonates with oxime

The enantioselective O-allylic alkylation of acetophenone oxime with various Morita-Baylis-Hillman (MBH) carbonates has been accomplished by the catalysis of a commercially available cinchona alkaloid (DHQD)2PHAL. The corresponding O-allylic products were obtained in moderate to excellent yields up to 96% ee.     

DFT <Emphasis Type="Italic">ab initio</Emphasis> study of the keto-enol tautomerism of barbituric acid

Summary Eight possible tautomeric forms of barbituric acid have been studied using the Gaussian-98 program at a B3LYP/D95** level of computation. All of them are considered in the isolated state in order to find the transition states between pairs of tautomers. The energies of the transition states were used for subsequent estimation of the energy barriers of the tautomeric transformations.Original Russian Text Copyright © 2004 by V. B. DelchevTranslated from Zhurnal Strukturnoi Khimii, Vol. 45, No. 4, pp. 602–610, July–August, 2004.This revised version was published online in April 2005 with a corrected cover date.     

Spontaneous CdTe --> alloy --> CdS transition of stabilizer-depleted CdTe nanoparticles induced by EDTA

CdTe nanoparticles stabilized by l-cysteine are chemically transformed into CdS nanoparticles of the same diameter via an intermediate CdTeS alloy without any auxiliary source of sulfur. The reaction is induced by ethylenediaminetetraacetic acid dipotassium salt dehydrate (EDTA), which was demonstrated experimentally to act as a catalyst by partially removing thiol stabilizers from the nanoparticle surface. It is hypothesized that addition of EDTA facilitates Te(2-) release, and oxidation of Te(2-) drives the nanoparticle transition process. Unlike many reports on reactions catalyzed by nanocolloids, this is likely to be the first observation of a catalytic reaction in which nanoparticles function as a substrate rather than a catalyst. It opens new pathways for the synthesis of novel nanoscale II-VI and other semiconductors and represents an interesting case of chemical processes in nanocolloids with reactivity increased by depletion of the surface layer of thiol stabilizers. This includes but is not limited to accurate control over the particle composition and crystallization rate. The slow rate of the CdTe --> alloy --> CdS transition is important for minimizing defects in the crystal lattice and results in a substantial increase of the quantum yield of photoluminescence over the course of the transition.     

The use of chemical shifts <Emphasis Type="Italic">vs.</Emphasis> coupling constants for studying tautomerism: a combined experimental and theoretical approach

When observing average NMR signals originated from a rapid equilibrium, the procedure to estimate the composition of the mixture is to use interpolation. To illustrate the difficulties of this approach, the much-studied case of the NH and OH tautomers of pyrazolinones will be reexamined. Calculated absolute shieldings and coupling constants were compared with experimental data. Although the large predominance of the OH tautomer in DMSO was confirmed, the result is a little disappointing because no consistency in the percentages was achieved using chemical shifts and coupling constants.     

Structure—activity relationships for <Emphasis Type="Italic">in vitro</Emphasis> oxime reactivation of chlorpyrifos-inhibited acetylcholinesterase

Organophosphorus pesticides parathion, chlorpyrifos, and malathion inhibit the enzyme acetylcholinesterase (AChE; EC 3.1.1.7) via phosphorylation of its active site. AChE reactivators and anticholinergics are compounds used as antidotes in the case of intoxication by these AChE inhibitors. In this work, chlorpyrifos, a representative member of this pesticide family, was used to inhibit the AChE activity of rat brain. The effect of twenty-one structurally different AChE reactivators was tested in vitro and subsequently, the relationship between their chemical structure and biological activity was outlined.     

Rotenone α‐oxime

The structure determination of the title compound, rotenone α‐oxime [systematic name: 1,2,12,12a‐tetra­hydro‐8,9‐di­meth­oxy‐2‐(1‐methyl­ethenyl)‐[1]­benzo­py­rano­[3,4‐b]­furo­[2,3‐h][1]benzo­pyran‐6(6H)‐one oxime], C₂₃H₂₃NO₆, confirms that the mol­ecule has an approximately V‐shaped structure. One of the rings has a typical cyclo­hexene‐like monoplanar conformation and the central ring adopts a 1,2‐diplanar conformation.