Dual stacked partial least squares for analysis of near-infrared spectra

A new ensemble learning algorithm is presented for quantitative analysis of near-infrared spectra. The algorithm contains two steps of stacked regression and Partial Least Squares (PLS), termed Dual Stacked Partial Least Squares (DSPLS) algorithm. First, several sub-models were generated from the whole calibration set. The inner-stack step was implemented on sub-intervals of the spectrum. Then the outer-stack step was used to combine these sub-models. Several combination rules of the outer-stack step were analyzed for the proposed DSPLS algorithm. In addition, a novel selective weighting rule was also involved to select a subset of all available sub-models. Experiments on two public near-infrared datasets demonstrate that the proposed DSPLS with selective weighting rule provided superior prediction performance and outperformed the conventional PLS algorithm. Compared with the single model, the new ensemble model can provide more robust prediction result and can be considered an alternative choice for quantitative analytical applications.     

木薯品质分析的近红外光谱模型建立及其应用研究

应用近红外光谱法(NIRS)建立木薯中淀粉、水分定量分析的近红外光谱数学模型,探讨了修正偏最小二乘法(MPLS)、偏最小二乘法(PLS)以及主成分回归法(PCR)等优化处理对定标模型的影响,确定了修正偏最小二乘法(MPLS)是建立模型最适合的数学方法。并对模型预测结果的准确性进行了评价。结果表明:验证集样品的化学值和近红外预测值拟合存在较好的线性关系,相关性显著。淀粉模型预测标准偏差(Sep)为0.850,系统偏差(Bias)为-0.095,相关系数(r)为0.971。水分模型预测标准偏差(Sep)为0.075,系统偏差(Bias)为0.007,相关系数(r)为0.980。淀粉、水分定量分析的NIRS数学模型具有较高的预测准确性,可应用于木薯批量收购中的品质等分析。     

Comparison of different calibration methods for the determination by FT-NIR spectroscopy of the hydroxyl number in polyester resins

Different calibration methods have been applied for the determination of the Hydroxyl Number in polyester resins, namely Partial Least Squares (PLS), Principal Component Regression (PCR), Ordinary Least Squares with selection of the variables by genetic algorithm (OLS-GEN) and back-propagation Artificial Neural Networks (BP-ANN). The predictive ability of the regression models was estimated by splitting the dataset in training and test sets by application of the Kohonen self-organising maps. The linear methods (OLS-GEN, PLS and PCR) showed comparable results while artificial neural networks provided the best results both in fitting and prediction.     

Evaluation of smoothing techniques in the run to run optimization of fed‐batch processes with u‐PLS

Run to run (R2R) optimization based on unfolded Partial Least Squares (u‐PLS) is a promising approach for improving the performance of batch and fed‐batch processes as it is able to continuously adapt to changing processing conditions. Using this technique, the regression coefficients of PLS are used to modify the input profile of the process in order to optimize the yield. When this approach was initially proposed, it was observed that the optimization performed better when PLS was combined with a smoothing technique, in particular a sliding window filtering, which constrained the regression coefficients to be smooth. In the present paper, this result is further investigated and some modifications to the original approach are proposed. Also, the suitability of different smoothing techniques in combination with PLS is studied for both end‐of‐batch quality prediction and R2R optimization. The smoothing techniques considered in this paper include the original filtering approach, the introduction of smoothing constraints in the PLS calibration (Penalized PLS), and the use of functional analysis (Functional PLS). Two fed‐batch process simulators are used to illustrate the results. Copyright © 2015 John Wiley & Sons, Ltd.     

Baseline correction combined partial least squares algorithm and its application in on-line Fourier transform infrared quantitative analysis

In order to eliminate the lower order polynomial interferences, a new quantitative calibration algorithm “Baseline Correction Combined Partial Least Squares (BCC-PLS)”, which combines baseline correction and conventional PLS, is proposed. By embedding baseline correction constraints into PLS weights selection, the proposed calibration algorithm overcomes the uncertainty in baseline correction and can meet the requirement of on-line attenuated total reflectance Fourier transform infrared (ATR-FTIR) quantitative analysis. The effectiveness of the algorithm is evaluated by the analysis of glucose and marzipan ATR-FTIR spectra. BCC-PLS algorithm shows improved prediction performance over PLS. The root mean square error of cross-validation (RMSECV) on marzipan spectra for the prediction of the moisture is found to be 0.53%, w/w (range 7–19%). The sugar content is predicted with a RMSECV of 2.04%, w/w (range 33–68%).     

Regression models based on new local strategies for near infrared spectroscopic data

In this work, a comparative study of two novel algorithms to perform sample selection in local regression based on Partial Least Squares Regression (PLS) is presented. These methodologies were applied for Near Infrared Spectroscopy (NIRS) quantification of five major constituents in corn seeds and are compared and contrasted with global PLS calibrations. Validation results show a significant improvement in the prediction quality when local models implemented by the proposed algorithms are applied to large data bases.     

Integration of Commercial Screen‐printed Electrodes into a Voltammetric Electronic Tongue for the Analysis of Aminothiols

A voltammetric sensor array (or electronic tongue) is developed for the simultaneous quantification of cysteine, glutathione and homocysteine without need of previous separation. It is based on the integration of three commercial screen‐printed electrodes (gold curated at high and low temperature and carbon modified with carbon nanotubes). Linear sweep voltammograms measured simultaneously by all three sensors are processed by Partial Least Squares (PLS) regression and different variables selection algorithms such as Genetic Algorithm and interval‐Partial Least Squares. The method was applied to synthetic mixtures and successfully validated, with correlation coefficients of prediction (R_p²) of 0.9542, 0.9429 and 0.9589 for cysteine, glutathione, and homocysteine respectively.     

A nonlinear partial least squares algorithm using quadratic fuzzy inference system

We introduce a new nonlinear partial least squares algorithm ‘Quadratic Fuzzy PLS (QFPLS)’ that combines the outer linear Partial Least Squares (PLS) framework and the Takagi–Sugeno–Kang (TSK) fuzzy inference system. The inner relation between the input and the output PLS score vectors is modeled by a quadratic TSK fuzzy inference system. The performance of the proposed QFPLS method is tested and compared against four other well‐known partial least squares methods (Linear PLS (LPLS), Quadratic PLS (QPLS), Linear Fuzzy PLS (LFPLS), and Neural Network PLS (NNPLS)) on various different types of randomly generated test data. QFPLS outperformed competitors based on two comparison measures: the output variables cumulative per cent variance captured by the PLS latent variables and the root mean‐square error of prediction (RMSEP). Copyright © 2009 John Wiley & Sons, Ltd.     

In-line prediction of drug release profiles for pH-sensitive coated pellets

A new method for the prediction of the drug release profiles during a running pellet coating process from in-line near infrared (NIR) measurements has been developed. The NIR spectra were acquired during a manufacturing process through an immersion probe. These spectra reflect the coating thickness that is inherently connected with the drug release. Pellets sampled at nine process time points from thirteen designed laboratory-scale coating batches were subjected to the dissolution testing. In the case of the pH-sensitive Acryl-EZE coating the drug release kinetics for the acidic medium has a sigmoid form with a pronounced induction period that tends to grow along with the coating thickness. In this work the autocatalytic model adopted from the chemical kinetics has been successfully applied to describe the drug release. A generalized interpretation of the kinetic constants in terms of the process and product parameters has been suggested. A combination of the kinetic model with the multivariate Partial Least Squares (PLS) regression enabled prediction of the release profiles from the process NIR data. The method can be used to monitor the final pellet quality in the course of a coating process.     

Elimination of the uninformative calibration sample subset in the modified UVE(Uninformative Variable Elimination)-PLS (Partial Least Squares) method.

In order to increase the predictive ability of the PLS (Partial Least Squares) model, we have developed a new algorithm, by which uninformative samples which cannot contribute to the model very much are eliminated from a calibration data set. In the proposed algorithm, uninformative wavelength (or independent) variables are eliminated at the first stage by using the modified UVE (Uninformative Variable Elimination)-PLS method that we reported previously. Then, if the prediction error of the ith (1 < or =i< or = n) sample is larger than 3sigma, the corresponding sample is eliminated as uninformative, where n is the total number of calibration samples and sigma is the standard deviation calculated from the other n(-1) samples. Calculation of sigma by the leave-one-out manner enhances the ability to identify the uninformative samples. The final PLS model is constructed precisely because both uninformative wavelength variables and uninformative samples are eliminated. In order to demonstrate the usefulness of the algorithm, we have applied it to two kinds of mid-infrared spectral data sets.     

Model building in multivariate additive partial least squares splines via the GCV criterion

In the literature, much effort has been put into modeling dependence among variables and their interactions through nonlinear transformations of predictive variables. In this paper, we propose a nonlinear generalization of Partial Least Squares (PLS) using multivariate additive splines. We discuss the advantages and drawbacks of the proposed model, building it via the generalized cross validation criterion (GCV) criterion, and show its performance on a real dataset and on simulated datasets in comparison to other methods based on splines. Copyright © 2009 John Wiley & Sons, Ltd.     

Resolution of ternary mixtures of nitrofurantoin, furazolidone and furaltadone by application of Partial Least Squares analysis to the differential pulse polarographic signals

The abilities of the Partial Least Squares (PLS) methods in the resolution of ternary mixtures of organic compounds (furaltadone, furazolidone and nitrofurantoin) by using their differential pulse polarographic (DPP) signals are reported. The applicability of these methods to resolve very overlapped peaks whose E(p) also changes with concentration is demonstrated. The analysis of both synthetic and real samples has been made with satisfactory results. The relative error of prediction (REP) is 8.7% for FD, 7.7% for FZ and 6.7% for NF by application of the PLS-2 method.     

Multivariate Prediction by Using Conventional and Derivative Partial Least Squares Statistics in a Complex Chemical System. Ternary Metals Mixture Resolution

Abstract

The quantitative prediction abilities of Partial Least Squares methods (type 1 and 2) for analysis of conventional and derivative absorption spectra are compared. The influence of the band width and of the spectral overlapping on the capacity of prediction of PLS in both cases are described and ternary mixtures of metals are resolved. To obtain analytes with adequate spectral characteristics the resolution of the metals has been accomplished by using the reaction with a cyclic hydroxamic acid and extraction into methyl isobutyl ketone (MIBK). Significant advantages have been found by application of differentiation techniques in combination with PLS-1 method.

     

Olive oil quantification of edible vegetable oil blends using triacylglycerols chromatographic fingerprints and chemometric tools

The present work studies the effectiveness of the use of triacylglycerols (TAGs) for the quantification of olive oil in blends with vegetable oils. The determinations were obtained using high-performance liquid chromatography (HPLC) coupled to a Charged Aerosol Detector (CAD), in combination with Partial Least Squares (PLS) regression and using interval PLS (iPLS) for variable selection.Results revealed that PLS models can predict olive oil concentrations with reasonable errors. Variable selection through iPLS did not improve predictions significantly, but revealed the chemical information important in the chromatogram to quantify olive oil in vegetable oil blends.     

Efficient use of pure component and interferent spectra in multivariate calibration

Partial Least Squares (PLS) is by far the most popular regression method for building multivariate calibration models for spectroscopic data. However, the success of the conventional PLS approach depends on the availability of a ‘representative data set’ as the model needs to be trained for all expected variation at the prediction stage. When the concentration of the known interferents and their correlation with the analyte of interest change in a fashion which is not covered in the calibration set, the predictive performance of inverse calibration approaches such as conventional PLS can deteriorate. This underscores the need for calibration methods that are capable of building multivariate calibration models which can be robustified against the unexpected variation in the concentrations and the correlations of the known interferents in the test set. Several methods incorporating ‘a priori’ information such as pure component spectra of the analyte of interest and/or the known interferents have been proposed to build more robust calibration models. In the present study, four such calibration techniques have been benchmarked on two data sets with respect to their predictive ability and robustness: Net Analyte Preprocessing (NAP), Improved Direct Calibration (IDC), Science Based Calibration (SBC) and Augmented Classical Least Squares (ACLS) Calibration. For both data sets, the alternative calibration techniques were found to give good prediction performance even when the interferent structure in the test set was different from the one in the calibration set. The best results were obtained by the ACLS model incorporating both the pure component spectra of the analyte of interest and the interferents, resulting in a reduction of the RMSEP by a factor 3 compared to conventional PLS for the situation when the test set had a different interferent structure than the one in the calibration set.     

Moment combined partial least squares (MC-PLS) as an improved quantitative calibration method: application to the analyses of petroleum and petrochemical products

A new quantitative calibration algorithm, called "Moment Combined Partial Least Squares (MC-PLS)", which combines the moment of spectrum and conventional PLS was proposed. Its calibration performance was evaluated for the analyses of three import petroleum and petrochemical products: gasoline, naphtha and polyol samples. The selected properties for these products included the research octane number (RON) and Reid vapor pressure (RVP) for gasoline, the distillation temperature at 10% (D 10%) for naphtha and the hydroxyl (OH) number for polyol. The major concept presented here used the moment to find the closest spectrum of a sample in a given dataset, and generate the difference spectrum and the corresponding difference in the property. These difference spectra and property differences were then used for PLS calibration. The moment has been employed in spectroscopic fields as a simple and effective "spectral feature characteristic" using just a few scalar values (moments). MC-PLS showed improved prediction performance over PLS for each case. In MC-PLS, the difference spectra generated using the moments were used as explained; therefore, additional detail in spectral variations can be utilized for calibrations. Additionally, the difference in the property was employed as reference data, so that its variation range was smaller when compared with that of the original property. Consequently, the MC-PLS performance could be better since the feature-enhanced spectra were used to model a narrower range of property variations. In the case of the D 10% prediction for naphtha, a non-linear prediction pattern that occurred in conventional PLS was effectively corrected using the MC-PLS method.     

Determination of Maneb Residues,in Tomatoes,by Spectrophotometric Method of Acid Hydrolysis,Through Multivariate Calibration

ABSTRACT

In this work, a chemometric method was applied through multivariate calibration, PLS (Partial Least Squares), to establish the analysis of ethylenebisdithiocarbamates residues in tomatoes samples by the hydrolysis method. The algorithm used to implement the PLS in the MatLab environment on IBM-compatible personal computer, was obtained from chemometrics package PLS_ToolBox. In samples with elevated levels of Maneb the univariate calibration showed similar results to the multivariate calibration. However, in samples with lower levels of residues increases occurred in the order of 15 to 47% in the levels detected by the multivariate calibration. In addition, there was a significant decrease in the standard deviations, in relation to those obtained, when the method of univariate calibration was used. The levels of contamination by Maneb found in tomatoes samples were below the maximum established by the Brazilian legislation.