Sortase-Mediated Transpeptidation for Site-Specific Modification of Peptides,Glycopeptides, and Proteins

Sortases are a family of transpeptidases found in gram-positive bacteria responsible for covalent anchoring of cell surface proteins to bacterial cell walls. It has been discovered that sortase A (SrtA) of Staphylococcus aureus origin is rather promiscuous and can accept various molecules as substrates. As a result, SrtA has been widely used to ligate peptides and proteins with a variety of nucleophiles, and the ligation products are useful for research in chemical biology, proteomics, biomedicine, etc. This review summarizes the recent applications of SrtA with special emphasis on SrtA-catalyzed ligation of carbohydrates with peptides and proteins.     

Electrocatalytic oxidation of phytohormone salicylic acid at copper nanoparticles-modified gold electrode and its detection in oilseed rape infected with fungal pathogen Sclerotinia sclerotiorum

Salicylic acid (SA) is a biological substance that acts as a phytohormone and plays an important role in signal transduction in plants. It is important to accurately and sensitively detect SA levels. A gold electrode modified with copper nanoparticles was used to assay the electrocatalytic oxidation of salicylic acid. It was found that the electrochemical behavior of salicylic acid was greatly improved at copper nanoparticles, indicating that anodic oxidation could be catalyzed at copper nanoparticles. And the pH had remarkable effect on the electrochemical process, a very well-defined oxidation peak appeared at pH 13.3 (0.2 M NaOH). The kinetics parameters of this process were calculated and the heterogeneous electron transfer rate constant (k) was determined to be 1.34 × 10⁻³ cm s⁻¹, and (1 − α)n_α was 1.22. The gold electrode modified with copper nanoparticles could detect SA at a higher sensitivity than common electrodes. The electrode was used to detect the SA levels in oilseed rape infected with the fungal pathogen Sclerotinia sclerotiorum. The results showed that the SA concentration reached a maximum during the 10th-25th hours after infection. This result was very similar to that determined by HPLC, indicating that the gold electrodes modified with copper nanoparticles could be used as salicylic acid sensors.     

Enzyme sensor for the electrochemical detection of the marine toxin okadaic acid

An enzyme sensor for the electrochemical detection of the marine toxin okadaic acid (OA) has been developed. The strategy was based on the inhibition of immobilised protein phosphatase (PP2A) by this toxin and the electrochemical measurement of the enzyme activity by the use of appropriate enzyme substrates, electrochemically active after dephosphorylation by the enzyme. Colorimetric inhibition assays have demonstrated the PP2A from human red blood cells to be more sensitive and to provide a wider linear range than the one produced by genetic engineering. Catechyl monophosphate (CMP) and p-aminophenyl phosphate (p-APP) have been tested as enzyme substrates, the former providing higher electrochemical currents at convenient working potentials (+450 mV vs. Ag/AgCl). Biosensors with 19.1 and 5.0 U of immobilised enzyme have been applied to the OA detection. Whereas the 19.1-U biosensor has provided higher electrochemical currents and more reliable determinations, the 5.0-U one has attained a lower 50% inhibition coefficient (IC₅₀) value (22.19 in front of 154.84 μg L⁻¹) and a larger working range (2.69-171.87 in front of 42.97-171.87 μg L⁻¹). The analysis of toxicogenic dinoflagellate extracts with both biosensors and the comparison with the colorimetric assay and liquid chromatography coupled to tandem mass spectrometry (LC-MS/MS) have demonstrated the applicability of the developed electrochemical devices as screening biotools for the assessment of the toxicity of a sample.     

Direct electrochemistry of recombinant tobacco peroxidase on gold

Direct electron transfer (DET) reactions of recombinant tobacco peroxidase (rTOP), namely direct electroreduction of Compound I/Compound II and heme Fe^3+/2+ conversion, were studied on gold electrodes. rTOP of wild type, non-glycosylated, was produced using an Escherichia coli expression system. At pH 5.0, the redox potential for direct electrochemical transformation of the Fe^3+/2+ of the peroxidase heme was −143 mV vs. AgAgCl, and 0.26 ± 0.07 pmol of the adsorbed rTOP were in DET contact with the gold electrode. The total amount of the adsorbed rTOP estimated from QCM data was 53 ± 5 pmol/cm² or 1.67 pmol when referred to the surface area of the electrodes used for electrochemical measurements. Of 1.67 pmol of adsorbed rTOP, only 0.76 pmol were catalytically active. DET between Au and the enzyme was also studied in the reaction of the bioelectrocatalytic reduction of H₂O₂ by cyclic voltammetry and amperometric detection of H₂O₂ at +50 mV with rTOP-modified Au electrodes placed in a wall-jet flow-through electrochemical cell. Maximal bioelectrocatalytic current response of the rTOP-modified gold electrodes to H₂O₂ was observed at pH 5.0 and stemmed from its bioelectrocatalytic reduction based on DET between Au and the active site of rTOP. Kinetic analysis of the DET reactions gave 52% of the adsorbed rTOP molecules active in DET reactions (0.4 pmol of adsorbed catalytically active rTOP, correspondingly), which correlated well with the non-catalytic-voltammetry data. DET was characterised by a heterogeneous ET rate constant of 13.2 s⁻¹, if one takes into account the QCM data, and 19.6 s⁻¹, if the amount of rTOP estimated from the data on DET transformation of Fe^3+/2+ couple of rTOP is considered. The sensitivity for H₂O₂ obtained for the rTOP-modified Au electrodes was 0.7 ± 0.1 A M⁻¹ cm⁻². These are the first ever-reported data on DET reactions of anionic plant peroxidases on bare gold electrodes.     

Homogeneous, unmodified gold nanoparticle-based colorimetric assay of hydrogen peroxide

An unmodified gold nanoparticle-based colorimetric assay system in homogeneous format has been developed using hydrogen peroxide (H₂O₂) as a model analyte. H₂O₂ is added to o-phenylenediamine/horseradish peroxidase solution, and allowed to react for 10 min. Then, unmodified gold nanoparticles that serve as “reaction indicators” are added to the reaction solution. The resulting mixture color changes dramatically from red to blue. The reason is that azoaniline, a horseradish peroxidase-catalyzed oxidation product, induces the nanoparticle aggregation. Using this approach, H₂O₂ can be semiquantitatively determined over the concentration range of ∼4 orders of magnitude by the naked eye. If the observed peak intensity at 420 nm is used for the construction of the calibration plot, hydrogen peroxide can be accurately determined down to concentration levels of 1.3 × 10⁻⁶ M. Compared with the conventional electrochemical protocol, this sensing system offers several important advantages: (1) ability to be monitored by the naked eye, (2) avoiding the need of surface modification of electrodes or gold nanoparticles and (3) detection in homogeneous solution. It is worthy of note that this efficient and convenient strategy is also suitable for the detection of other species, such as glucose and cholesterol.     

Pulsed coulometric detection of carbohydrates at a constant detection potential at gold electrodes in alkaline media

A significant increase in the signal-to-noise ratio for the pulsed amperometric detection (PAD) of carbohydrates at gold electrodes is obtained by increasing the length of the current integration period (t_i) from the traditional value of 16.7 ms (i.e., $\text{1}\text{60}$ Hz). For t_i > 16.7 ms, the integrated response (q, coulombs) is plotted as the signal. This pulsed coulometric detection (PCD) is applied in a flow-injection system. For t_i = 500 ms, the detection limit with the instrumentation used is 1 μM (S/N = 2) for glucose which is a significant improvement on the value 35 μM found with PAD. The absolute detection limits for glucose and sucrose are ca. 50 pmol and 125 pmol, respectively, in 50-μl samples. Calibration plots (q_p vs. C^b) for PCD are linear over significantly larger dynamic ranges than those observed for PAD because of the lower detection limits.     

Impedimetric aptasensor for Staphylococcus aureus based on nanocomposite prepared from reduced graphene oxide and gold nanoparticles

We describe here an aptasensor for the ultrasensitive detection of Staphylococcus aureus by electrochemical impedance spectroscopy (EIS). Single-stranded DNA was linked to a nanocomposite prepared from reduced graphene oxide (rGO) and gold nanoparticles (AuNP). Thiolated ssDNA was covalently linked to the AuNPs linked to rGO, and probe DNA was immobilized on the surface of an AuNP-modified glassy carbon electrode to capture and concentrate Staph. aureus. The probe DNA of the aptasensor selectively captures the target bacteria in its three-dimensional space, and these results in a dramatic increase in impedance. Scanning electron microscopy, cyclic voltammetry and EIS were used to monitor the single steps of the electrode assembly process. The effect was utilized to quantify the bacteria in the concentration range from 10 to 10⁶ cfu mL^?1 and with a detection limit of 10 cfu mL^?1 (S/N?=?3). The relative standard deviation of Staphylococcus aureus detection was equal to 4.3 % (10⁵ cfu mL^?1, n?=?7). In addition to its sensitivity, the biosensor exhibits high selectivity over other pathogens.

Aptamer-based electrochemical approach to the detection of thrombin by modification of gold nanoparticles

This paper presents a simple electrochemical approach for the detection of thrombin, using aptamer-modified electrodes. The use of gold nanoparticles results in significant signal enhancement for subsequent detection. 1,6-Hexanedithiol was used as the medium to link Au nanoparticles to a bare gold electrode. Anti-thrombin aptamers were immobilized on the gold nanoparticles’ surfaces by self-assembly. The packing density of aptamers was determined by cyclic voltammetric (CV) studies of redox cations (e.g., [Ru(NH₃)₆]³⁺) which were electrostatically bound to the DNA phosphate backbones. The results indicate that the total amount of aptamer probes immobilized on the gold nanoparticle surface is sixfold higher than that on the bare electrode, leading to increased sensitivity of the aptasensor and a detection limit of 1 pmol L⁻¹. Based on the Langmuir model, the sensor signal displayed an almost perfect linear relationship over the range of 1 pmol L⁻¹ to 30 nmol L⁻¹. Moreover, the proposed aptasensor is highly selective and stable. In summary, this biosensor is simple, highly sensitive, and selective, which is beneficial to the ever-growing interest in fabricating portable bio-analytical devices with simple electrical readout procedures.     

Cucurbit[6]uril functionalized gold nanoparticles and electrode for the detection of metformin drug

Based on the host-guest molecular recognition capability of cucurbit[6]uril (CB[6]) modified on the gold surface, sensitive spectrophotometric and electrochemical methods for the detection of metformin (MET) have been developed. The molecular recognition between cucurbit[7]uril (CB[7]) or CB[6] and MET is initially demonstrated and the related recognition mechanism is further deliberated. First, CB[6]-modified gold nanoparticles (AuNPs/CB[6]) were synthesized and then characterized by ultraviolet visible light spectrum (UV–vis) and transmission electron microscopy (TEM). The aggregation of AuNPs/CB[6] prompted by MET triggered changes of color and the absorption spectrum, that explored for the visual identification and spectrophotometric determination of MET. Under the optimized detection conditions, the UV–vis spectrometry had a good linear relationship in the range of 6–700 µmol/L, and the detection limit was 2 µmol/L. In addition, a single-layer CB[6]-modified gold electrode (GE-CB[6]) detection system for MET was constructed. As the concentration of MET in the solution continues to increase, the charge transfer resistance (Rct) in the Nyquist diagram of the electrochemical impedance method (EIS) continues to increase. In the concentration range from 10 pmol/L to 20 nmol/L, the logarithm of the MET concentration has a good linear relationship with Rct, and the detection limit of this method is 1.35 pmol/L. Both methods have good concentration sensitivity to MET in different concentration ranges, providing a powerful tool for the detection of MET.     

Tunable nanogap devices for ultra-sensitive electrochemical impedance biosensing

A wealth of research has been available discussing nanogap devices for detecting very small quantities of biomolecules by observing their electrical behavior generally performed in dry conditions. We report that a gold nanogapped electrode with tunable gap length for ultra-sensitive detection of streptavidin based on electrochemical impedance technique. The gold nanogap is fabricated using simple monolayer film deposition and in-situ growth of gold nanoparticles in a traditional interdigitated array (IDA) microelectrode. The electrochemical impedance biosensor with a 25-nm nanogap is found to be ultra-sensitive to the specific binding of streptavidin to biotin. The binding of the streptavidin hinder the electron transfer between two electrodes, resulting in a large increase in electron-transfer resistance (R_et) for operating the impedance. A linear relation between the relative R_et and the logarithmic value of streptavidin concentration is observed in the concentration range from 1 pM (picomolar) to 100 nM (nanomolar). The lowest detectable concentration actually measured reaches 1 pM. We believe that such an electrochemical impedance nanogap biosensor provides a useful approach towards biomolecular detection that could be extended to a number of other systems.     

Non-enzymatic hydrogen peroxide sensor based on a nanoporous gold electrode modified with platinum nanoparticles

A novel non-enzymatic electrochemical sensor based on a nanoporous gold electrode modified with platinum nanoparticles was constructed for the determination of hydrogen peroxide (H₂O₂). Platinum nanoparticles exhibit good electrocatalytic activity towards hydrogen peroxide. The nanoporous gold (NPG) increases the effective surface area and has the capacity to promote electron-transfer reactions. With electrodeposition of Pt nanoparticles (NPs) on the surface of the nanoporous gold, the modified Au electrode afforded a fast, sensitive and selective electrochemical method for the determination of H₂O₂. The linear range for the detection of H₂O₂ was from 1.0 × 10^?7 M to 2.0 × 10^?5 M while the calculated limit of detection was 7.2 × 10^?8 M on the basis of the 3σ/slope (σ represents the standard deviation of the blank samples). These findings could lead to the widespread use of electrochemical sensors to detect H₂O₂.     

An In Vitro Study of the Effect of Viburnum opulus Extracts on Key Processes in the Development of Staphylococcal Infections

Staphylococcus aureus is still one of the leading causes of both hospital- and community-acquired infections. Due to the very high percentage of drug-resistant strains, the participation of drug-tolerant biofilms in pathological changes, and thus the limited number of effective antibiotics, there is an urgent need to search for alternative methods of prevention or treatment for S. aureus infections. In the present study, biochemically characterized (HPLC/UPLC–QTOF–MS) acetonic, ethanolic, and water extracts from fruits and bark of Viburnum opulus L. were tested in vitro as diet additives that potentially prevent staphylococcal infections. The impacts of V. opulus extracts on sortase A (SrtA) activity (Fluorimetric Assay), staphylococcal protein A (SpA) expression (FITC-labelled specific antibodies), the lipid composition of bacterial cell membranes (LC-MS/MS, GC/MS), and biofilm formation (LIVE/DEAD BacLight) were assessed. The cytotoxicity of V. opulus extracts to the human fibroblast line HFF-1 was also tested (MTT reduction). V. opulus extracts strongly inhibited SrtA activity and SpA expression, caused modifications of S. aureus cell membrane, limited biofilm formation by staphylococci, and were non-cytotoxic. Therefore, they have pro-health potential. Nevertheless, their usefulness as diet supplements that are beneficial for the prevention of staphylococcal infections should be confirmed in animal models in the future.     

Enzyme inhibition-based biosensor for the electrochemical detection of microcystins in natural blooms of cyanobacteria

An electrochemical biosensor for the detection of microcystin has been developed based on the inhibition of the protein phosphatase 2A (PP2A) by this cyanobacterial toxin. The enzyme has been immobilised by entrapment using a poly(vinyl alcohol) azide-unit pendant water-soluble photopolymer (PVA-AWP). Electrode supports and immobilisation conditions have been optimised by colorimetric assays, the highest immobilisation yields being obtained with screen-printed graphite electrodes and the 1:2 PP2A:PVA ratio. Catechyl monophosphate (CMP), α-naphthyl phosphate (α-NP) and 4-methylumbelliferyl phosphate (4-MUP) have been used as phosphorylated substrates to monitor the protein phosphatase activity by electrochemical methods, the former providing the highest chronoamperometric currents at appropriate working potentials (+450 mV versus Ag/AgCl). Incubation with standard microcystin solutions has demonstrated the inhibition of the immobilised enzyme, proportional to the toxin concentration. The standard inhibition curve has provided a 50% inhibition coefficient (IC₅₀) of 83 μg L⁻¹, a limit of detection (LOD; 35% inhibition) of 37 μg L⁻¹, and 100% inhibition at about 1000 μg L⁻¹. Real samples of cyanobacterial blooms from the Tarn River (Midi-Pyrénées, France) have been analysed using the developed amperometric biosensor and the toxin contents have been compared to those obtained by a conventional colorimetric protein phosphatase inhibition (PPI) assay and high-performance liquid chromatography (HPLC). The results clearly justify the use of the developed amperometric biosensor as screening method for microcystin detection.     

Colorimetric detection of cadmium in water using L-cysteine Functionalized gold–silver nanoparticles

Abstract

A new simple colorimetric assay was developed for the selective and sensitive detection of cadmium (II) in water samples using L-cysteine functionalized gold–silver nanoparticles. The gold–silver nanoparticles were synthesized by reducing HAuCl₄ and AgNO₃ in aqueous medium and were further functionalized with L-cysteine. The formation of homogeneous gold–silver nanoparticles was characterized by transmission electron microscopy, energy-dispersive X-ray spectroscopy, particle size distribution, and ultraviolet–visible absorption methods. In the presence of cadmium (II), the aggregation of functionalized gold–silver nanoparticles caused by the interaction between cadmium (II) and L-cysteine resulted in a naked-eye visible color change of L-cysteine functionalized gold–silver nanoparticles from orange–yellow to green, which can be monitored by a simple ultraviolet–visible spectrophotometer. Under the optimal conditions, the absorbance ratio at 600–435?nm (A₆₀₀/A₄₃₅) was linear to the concentration of cadmium (II) from 0.4 to 38.6?μM, and the limit of detection of cadmium (II) was 44?nM. Interference measurements showed that the method exhibited good selectivity. The proposed method was successfully applied to the determination of cadmium (II) in environmental water samples. The results indicated that this simple, selective, and sensitive sensing system has good potential for practical applications.     

Detection of polycyclic aromatic hydrocarbon (PAH) compounds in artificial sea-water using surface-enhanced Raman scattering (SERS)

This paper reports an accurate synthesis of surface-enhanced Raman scattering (SERS) active substrates, based on gold colloidal monolayer, suitable for in situ environmental analysis. Quartz substrates were functionalized by silanization with (3-mercaptopropyl)trimethoxysilane (MPMS) or (3-aminopropyl)trimethoxysilane (APTMS) and they subsequently reacted with colloidal suspension of gold metal nanoparticles: respectively, the functional groups SH and NH₂ bound gold nanoparticles. Gold nanoparticles were prepared by the chemical reduction of HAuCl₄ using sodium tricitrate and immobilized onto silanized quartz substrates. Active substrate surface morphology was characterized with scanning electron microscopy (SEM) measurements and gold nanoparticles presented a diameter in the range 40-100 nm. Colloidal hydrophobic films, allowing nonpolar molecule pre-concentration, were obtained. The surfaces exhibit strong enhancement of Raman scattering from molecules adsorbed on the films. Spectra were recorded for two PAHs, naphthalene and pyrene, in artificial sea-water (ASW) with limits of detection (LODs) of 10 ppb for both on MPMS silanized substrates.     

Miniaturized electrochemical system for cholinesterase inhibitor detection

The utility of a simple, low-cost detection platform for label-free electrochemical characterization of acetylcholinesterase (AChE) inhibition is demonstrated as a potential tool for screening of small-molecule therapeutic agents for Alzheimer's disease (AD). Technique validation was performed against the standard Ellman's colorimetric assay using the clinically established cholinesterase inhibitor (ChEI), Donepezil (Aricept^®). Electrochemical measurements were obtained by differential pulse voltammetry (DPV) performed using a portable potentiostat system for detection of the enzymatic product, thiocholine (TCh), by direct oxidation on unmodified gold screen-printed electrodes. The IC₅₀ profiles for Donepezil measured in vitro were found to be comparable between both colorimetric and electrochemical detection methods for the analysis of purified human erythrocyte-derived AChE (28 ± 7 nM by DPV; 26 ± 8 nM by Ellman's method). The selectivity of this unmodified electrode system was compared to a range of biological sulfur-containing compounds including cysteine, homocysteine, glutathione and methionine as well as ascorbic acid. Preliminary studies also demonstrated the potential applicability of this electrochemical technique for the analysis of Donepezil in crude cholinesterase samples from anterior cortex homogenates of C57BL/6J mice.     

Investigation of the direct electrochemistry and electrocatalysis of myoglobin on gold nanorods modified electrode

Direct electrochemistry and electrocatalysis of myoglobin (Mb) on a gold nanorod (AuNR)‐decorated carbon ionic liquid electrode (CILE) were studied in this article. The fabricated Nafion/Mb/AuNRs/CILE was used as an electrochemical biosensor for determining trichloroacetic acid (TCA) and sodium nitrite (NaNO₂). AuNRs exhibited high metal conductivity, and acted as the bridge between electrochemical active centers of Mb and the substrate electrode with the electron transfer rate accelerated. Electrochemical performances of Nafion/Mb/AuNRs/CILE were checked in pH 3.0 phosphate buffer solution with the electrochemical parameters calculated. Low detection limits and wide linear ranges were obtained in electrocatalytic investigations of different catalytic substrates including TCA and NaNO₂, which exhibited potential applications in actual sample detection.     

Self-assembled monolayers of crown ethers for solid phase extraction in flow-injection analysis

Modification of a gold electrode with 2-[(6-mercaptohexyl)oxy]methyl-15-crown-5 yielded a self-assembled monolayer (SAM), CESAM, that preconcentrated Pb(II) from aqueous solution. With a 20 h modification, measurements by the copper underpotential deposition method showed that the fraction of the surface covered, Θ, was 0.99. Proof-of-concept was obtained for an analytical strategy in which the Pb(II)-CESAM was released into a flow stream by electrochemical oxidation of the gold thiolate and detected amperometrically. A detection limit of 6 pmol Pb(II) was estimated from the signal-to-noise ratio. Electrochemical release into a flow injection analysis system with detection by argon inductively coupled plasma spectroscopy provided detection of 0.2 nmol Pb(II) in a 200 μL injection. Analytical utility requires rapid, reproducible renewal of the CESAM. With 30-90 s modifications, Θ=0.97±0.01 and was independent of modification time over that range.     

A ratiometric electrochemical biosensor for sensitive detection of Hg based on thymine–Hg–thymine structure

In this paper, a simple, selective and reusable electrochemical biosensor for the sensitive detection of mercury ions (Hg²⁺) has been developed based on thymine (T)-rich stem–loop (hairpin) DNA probe and a dual-signaling electrochemical ratiometric strategy. The assay strategy includes both “signal-on” and “signal-off” elements. The thiolated methylene blue (MB)-modified T-rich hairpin DNA capture probe (MB-P) firstly self-assembled on the gold electrode surface via Au–S bond. In the presence of Hg²⁺, the ferrocene (Fc)-labeled T-rich DNA probe (Fc-P) hybridized with MB-P via the Hg²⁺-mediated coordination of T–Hg²⁺–T base pairs. As a result, the hairpin MB-P was opened, the MB tags were away from the gold electrode surface and the Fc tags closed to the gold electrode surface. These conformation changes led to the decrease of the oxidation peak current of MB (I_MB), accompanied with the increase of that of Fc (I_Fc). The logarithmic value of I_Fc/I_MB is linear with the logarithm of Hg²⁺ concentration in the range from 0.5 nM to 5000 nM, and the detection limit of 0.08 nM is much lower than 10 nM (the US Environmental Protection Agency (EPA) limit of Hg²⁺ in drinking water). What is more, the developed DNA-based electrochemical biosensor could be regenerated by adding cysteine and Mg²⁺. This strategy provides a simple and rapid approach for the detection of Hg²⁺, and has promising application in the detection of Hg²⁺ in real environmental samples.     

Electrochemical impedance spectroscopy detection of lysozyme based on electrodeposited gold nanoparticles

A simple, highly sensitive, and label-free electrochemical impedance spectroscopy (EIS) aptasensor based on an anti-lysozyme-aptamer as a molecular recognition element, was developed for the detection of lysozyme. Improvement in sensitivity was achieved by utilizing gold nanoparticles (AuNPs), which were electrodeposited onto the surface of a gold electrode, as a platform for immobilization of the aptamer. To quantify the amount of lysozyme, changes in the interfacial electron transfer resistance (R_et) of the aptasensor were monitored using the redox couple of an [Fe(CN)₆]^3−/4− probe. The R_et increased with lysozyme concentration. The plot of R_et against the logarithm of lysozyme concentration is linear over the range from 0.1 pM to 500 pM with a detection limit of 0.01 pM. The aptasensor also showed good selectivity for lysozyme without being affected by the presence of other proteins.