Mass spectrometry of the triethylsilyl,tri-n-propylsilyl and tri-n-butylsilyl derivatives of some alcohols,steroids and cannabinoids

The 25 _eV mass spectra of the trialkylsilyl (R = Et, Pr, Bu) derivatives of several alcohols, steroids and cannabinoids are compared with those of the corresponding trimethylsilyl (TMS) derivatives. Abundant ions produced by elimination of one of the alkyl groups characterize most of the spectra. Although the presence of such ions is advantageous in certain cases, such as for single ion monitoring studies, the spectra usually contain fewer ions of diagnostic use than the spectra of corresponding TMS derivatives. Successive elimination of C_nH_2n fragments is also a feature of these spectra.     

Analytical methods for monoterpene glycosides in grape and wine. II. Qualitative and quantitative determination of monoterpene glycosides in grape.

Free and glycosidically bound terpenes of five Vitis vinifera grape cultivars (muscat of Alexandria, muscat of Frontignan, muscat of Hamburg, muscat Ottonel and Gewürztraminer) were investigated. The free and bound fractions were separated by selective retention on Amberlite XAD-2 resin. The glycosidic fractions were analysed by gas chromatography and gas chromatography-mass spectrometry using either enzymic hydrolysis and subsequent analysis of the released aglycones or trimethylsilyl (TMS) and trifluoroacetyl derivatives. The known monoterpenyl, benzyl and 2-phenylethyl beta-D-glucopyranosides, beta-rutinosides, 6-O-alpha-L-arabinofuranosyl-beta-D-glucopyranosides and 6-O-beta-D-apiofuranosyl-beta-D-glucopyranosides were determined. A number of other glycosides were detected and the structures of some of them, mainly apiosylglucosides and glucosides with aglycones in higher oxidation state than linalol, were tentatively identified using the mass spectra of their TMS and TFA derivatives and the results obtained from the analysis of their aglycones.     

Electron impact-induced rearrangement of trimethylsilyl groups in long chain compounds

Mass spectra of trimethylsilyl (TMS) derivatives of long chain dicarboxylic acids, hydroxy acids, cyano acids, and terminal diols, dithiols and diamines have been examined. A number of fragmentation pathways involving rearrangement of partial or intact TMS groups between the termini or remote points in the chain have been determined, using deuterium and carbon-13 labeling, and high resolution mass spectrometry. Knowledge of the occurrence of functional group migrations of this type is essential to the correct interpretation of mass spectra of TMS derivatives, which are now in wide use in mass spectrometry and gas chromatography. These data in addition provide further evidence for the general ability of remote functional groups to interact, by winding or coiling of long chains. A number of interesting doubly-charged ions are reported, in which the charges are reported, in which the charges are located at opposite ends of long chains, and for which no singly-charged counterparts are observed.     

Mass spectrometry of the trimethylsilyl derivatives of some cardiac aglycones and monoglycosides

Mass spectra of the trimethylsilyl (TMS) ethers of digitoxigenin, digoxigenin, digitoxigenin monodigitoxoside, digoxigenin monodigitoxoside and peruvoside were obtained. Ions appearing at m/e 170 and m/e 183 are proposed to be indicative of the enol TMS ether moiety as confirmed by appropriate shifts in the mass spectrum of digitoxigenin derivatized with perdeuterotrimethylsilylating reagent. The TMS ether derivatives of the monoglycosides produced abundant molecular ions and the base peaks in the spectra represent fragments of the sugar portion of the molecule.     

Uses of Chloromethyldimethylsilyl Ethers as Derivatives for Combined Gas Chromatography-Mass Spectrometry of Steroids

Abstract

Chloromethyldimethylsilyl (CMDMS) ethers are useful derivatives for combined gas chromatography-mass spectrometry. They have characteristically longer retention times than the corresponding trimethylsilyl (TMS) derivatives, and this permits effective fractionation of mono-, di-, and trihydroxy steroids. CMDMS ethers provide mass spectra comparable with those of TMS ethers, but ions containing the CMDMS group are readily recognisable in the former by virtue of the two abundant natural isotopes of chlorine. This facilitates interpretation of spectra and may be expected to aid the location of drug metabolites by selective ion monitoring.     

Mass spectrometry of hydroxy dicarboxylic acids as trimethylsilyl derivatives. Rearrangement fragmentations

Gas chromatography—mass spectrometry offers a convenient method for the separation and identification of hydroxy dicarboxylic acids as open-chain trimethylsilyl (TMS) derivatives. Mass spectra were studied of aldaric (tartronic, tartaric, pentaric and hexaric) acids and deoxyaldaric (malic, 2-deoxypentaric, 2-deoxyhexaric, 3-deoxypentaric and 3-deoxyhexaric) acids. The different structural types can be readily identified from their characteristic spectra. The most prominent fragmentations involving the rupture of one bond are the loss of a siliconlinked methyl group and the formation of α-cleavage ions by carbon chain cleavage. The further decay is characterized by a number of significant rearrangements specific of TMS derivatives. Several of these can be classified as involving migration of a TMS group to an oxygen atom or migration of an ester OTMS group to a silicon atom. Concomitant loss of a stable molecule often provides a driving force. Prominent odd-electron ions are formed by a McLafferty-type rearrangement of a TMS group. The decomposition of several even-electron ions can be regarded as analogous to that rearrangement.     

Detection and identification of quinonemethide triterpenes in Peritassa campestris by mass spectrometry

Analysis of tingenone and tingenol quinonemethide triterpenes was made by gas chromatography/mass spectrometry (GC/MS) of their trimethylsilyl (TMS) ethers. An extra TMS group, in addition to those predicted from the known structures, is added to these compounds during the derivatization process. The electron impact mass spectra showed base peaks at m/z 549 and 623, respectively, for the TMS derivatives of tingenone and tingenol, and electrospray (ES) and collision-activated dissociation (CAD) studies indicate that these ions correspond to losses of a methyl group from the derivatives studied. A mechanism, based on ES-MS/MS studies, is suggested for the derivatization and fragmentation pattern.     

Gas chromatography/mass spectrometric analysis of N,N-dialkylaminoethyl-2-chlorides and trimethylsilyl derivatives of N,N-dialkylaminoethan-2-ols for verification of the Chemical Weapons Convention

Gas chromatography/electron ionization mass spectrometry (GC/EI-MS) of N,N-dialkylaminoethyl-2-chlorides (DAAECls) and trimethylsilyl (TMS) derivatives of N,N-dialkylaminoethan-2-ols (DAAEAs) has been carried out. GC/EI-MS data of these compounds are of importance for verification of the Chemical Weapons Convention (CWC). Based on these EI mass spectra, generalized fragmentation routes are proposed that rationalize most of the characteristic ions.     

Synthesis and complete assignment of NMR data of 20 chalcones

Chalcones, intermediates in flavonoid biosynthesis, can exhibit antibacterial, antiproliferative, and anti-inflammatory properties. Chalcones contain two benzene rings and both hydroxylated and methoxylated analogs are frequently produced by hydroxylases and O-methyltransferases in plant biosynthetic pathways. Assignments of NMR peaks in the spectra of hydroxylated and/or methoxylated chalcones can help in identifying novel chalcone derivatives isolated from natural sources by referencing these data against NMR spectra obtained from known chalcones. We report here the syntheses of 20 chalcones and complete assignments of (1)H and (13)C NMR spectra.     

Fragmentation of trimethylsilyl derivatives of 2-alkoxyphenols: A further violation of the ‘even-electron rule’

The mass spectra of trimethylsilyl (TMS) ethers of 2-methoxyphenols show abundant [M–30]⁺˙ ions originating from consecutive loss of two methyl radicals. This is illustrated by comparison of the accurate mass-measured and linked-scan spectra of the TMS derivatives of 2-methoxyphenol (guaiacol), 4-hydroxy-3-methoxybenzaldehyde (vanillin) and 3-(4-hydroxy-3-methoxyphenyl)-2-propenoic acid methyl ester (ferulic acid methyl ester) with those of the TMS derivatives of phenol, 4-hydroxybenzaldehyde, 3-(4-hydroxyphenyl)-2-propenoic acid methyl ester (p-coumaric acid methyl ester), 3-methoxyphenol and 4-methoxyphenol. This distinctive ortho effect is valuable in the identification of isomeric phenolic compounds. In the spectra of the TMS derivatives of 2-ethoxyphenol and 2-propoxyphenol the sequential loss of two radicals is less pronounced, because elimination of the side-chain and a methyl group with rearrangement and hydrogen migration is competitive.     

Analysis of 1,2-diols of linoleic, alpha-linolenic and arachidonic acid by gas chromatography--mass spectrometry using cyclic alkyl boronic esters

Arachidonic acid is metabolized by hepatic and renal cortical microsomes in the presence of NADPH to vicinal dihydroxyeicosatrienoic acids as some of the major metabolites. Other polyunsaturated, long-chain fatty acids might be metabolized to vicinal dihydroxy acids (1,2-diols) in the same way. To facilitate identification of 1,2-diols in biological samples, a series of unsaturated 1,2-diols were synthesized from linoleic, alpha-linolenic and arachidonic acid and the electron-ionization mass spectra of cyclic methane- and n-butaneboronic ester derivatives and of trimethylsilyl (TMS) ether derivatives were compared. The TMS ether derivatives gave rise to weak molecular ions but prominent informative fragmentation ions were formed by alpha-cleavage as well as cleavage between the carbons with the TMS ethers. The TMS ether derivative of methyl 15,16-dihydroxy-9,12-octadecadienoate had a considerably larger carbon value than the other C18 diols, while the cyclic boronates were poorly separated on gas chromatography. The methane- and n-butaneboronic acid derivatives showed strong molecular ions and a characteristic but not very informative fragmentation, although the position of the hydroxyls could be deduced from one or two fragments formed by alpha-cleavage. Linoleic and alpha-linolenic acid are metabolized in the rabbit to many polar products by hepatic and renal cortical microsomes and NADPH. 12,13-Dihydroxy-9-octadecenoic acid and other metabolites of linoleic acid were identified by gas chromatography--mass spectrometry.     

Trimethylsilyl transfer during electron ionization mass spectral fragmentation of some omega-hydroxycarboxylic and omega-dicarboxylic acid trimethylsilyl derivatives and the effect of chain length

The electron ionization (EI) mass spectral fragmentation of omega-hydroxycarboxylic and omega-dicarboxylic acid trimethylsilyl derivatives was investigated. The mass spectra of these compounds exhibited fragment ions resulting from classical fragmentation of the trimethylsilyl ether and ester groups, and others resulting from the interactions between the two functionalities (m/z 147, 204, 217, [M-31](+) and [M-105](+) in the case of omega-hydroxycarboxylic acid derivatives and m/z 147, 204, 217 and [M-131](+) in the case of omega-dicarboxylic acid derivatives). Several fragmentation pathways were proposed to explain the formation of these different fragment ions. It is proposed that the ions at m/z 204 and 217 are formed via an initial trimethylsilyl transfer between the ether and the ester group or between the two ester groups. This transfer appeared to be more favoured in the case of omega-dicarboxylic acid derivatives and to be dependent on the chain length. A more efficient transfer was in fact observed for compounds with a relatively long alkyl chain. In the case of shorter omega-hydroxycarboxylic and omega-dicarboxylic acid trimethylsilyl derivatives the formation of the ions at m/z 204 and 217 suffers strongly from competition from production of the ion at m/z 147.     

The study and characterization of nucleosides by mass spectrometry—I: The mass spectra of pyrimidine 2,2′-anhydronucleosides and their derivatives

The mass spectra of 2,2′-anhydrouridine, 2,2′-anhydrothymidine and 2,2′-anhydro-4-thiouridine are reported. The acetyl, trifluoroacetyl, trityl, pivaloyl and trimethylsilyl ether derivatives were also studied. Deuterium labeling in acetyl and trimethylsilyl groups aided characterization of many ions in the spectra, as well as helping to clarify hydrogen migration processes. The anhydronucleosides and their derivatives are readily distinguished from natural nucleosides by the presence of an ion containing the base moiety plus the anhydro-ring plus one hydrogen atom from the rest of the molecule. As for natural nucleosides the [base + H]⁺ and [base + 2H]⁺ ions are usually prominent, but in contrast to natural nucleosides, ions characteristic of the sugar moiety do not retain the 2′-oxygen atom (i.e. the oxygen atom of the anhydro-ring). The mass spectra of deuterium labeled derivatives suggest a test for the presence of a 3′-O-acetyl function (the O-acetyl group is lost from the molecular ion much more readily from the 3′- than from the 5′-carbon atom). The trimethylsilyl derivatives showed evidence in their mass spectra for migration of trimethylsilyl groups in addition to hydrogen atoms.     

Synthesis of flavonoid analogues as scaffolds for natural product-based combinatorial libraries

The design and synthesis of flavonoid analogues as combinatorial scaffolds is reported. Using commercially available materials, we synthesized chalcones with fluoro and carboxy groups. Nitration of these compounds generated highly functionalized flavonoid scaffolds with an o-fluoronitrobenzene template. Subsequent cyclizations of these chalcones resulted in the formation of several flavone and flavonone scaffolds. One of the flavonones was chosen as the scaffold to synthesize flavonoid derivatives on the solid phase. A series of flavonoid derivatives were obtained in high yields, which demonstrates that these highly functionalized scaffolds can be used in the synthesis of natural product-based combinatorial libraries for drug discovery.     

The mass spectra of the trimethylsilyl derivatives of some alkyl and aminoalkyl phosphonates

The mass spectra of the trimethylsilyl derivatives of a series of alkyl and aminoalkyl phosphonates were investigated with the aid of deuterium labeling and high resolution mass measurements. The spectra contained several prominent ions characteristic of the phosphonate system and a number of ions produced by inter and intra molecular migration and interaction of trimethylsilyl groups.     

Comprehensive two-dimensional gas chromatography, retention indices and time-of-flight mass spectra of flavonoids and chalcones

The applicability of comprehensive two-dimensional gas chromatography (GC×GC) for flavonoids analysis was investigated by separation and identification of flavonoids in standards, and a complex matrix natural sample. The modulation temperature was optimized to achieve the best separation and signal enhancement. The separation pattern of trimethylsilyl (TMS) derivatives of flavonoids was compared on two complementary column sets. Whilst the BPX5/BPX50 (NP/P) column set offers better overall separation, BPX50/BPX5 (P/NP) provides better peak shape and sensitivity. Comparison of the identification power of GC×GC-TOFMS against both the NIST05 MS library and a laboratory (created in-house) TOFMS library was carried out on a flavonoid mixture. The basic retention index information on high-performance capillary columns with a non-polar stationary phase was established and database of mass spectra of trimethylsilyl derivatives of flavonoids was compiled. TOFMS coupled to GC×GC enabled satisfactory identification of flavonoids in complex matrix samples at their LOD over a range of 0.5-10 μg/mL. Detection of all compounds was based on full-scan mass spectra and for each compound a characteristic ion was chosen for further quantification. This study shows that GC×GC-TOFMS yields high specificity for flavonoids derived from real natural samples, dark chocolate, propolis, and chrysanthemum.     

Structural analysis of selected characteristic flavones by electrospray tandem mass spectrometry.

Seven structure analogical flavonoid aglycones have been analyzed using electrospray ionization tandem mass spectrometry (ESI-MSn) in the negative-ion mode. The spectra obtained ESI-MSn allowed us to propose plausible schemes for their fragmentation mechanism. By analyzing the product ions spectra of deprotonated molecule ions [M-H](-), some neutral diagnostic losses and specific retro Diels-Alder fragments were obtained. By using all of these characteristic fragment ions we can specially differentiate the flavone isomer.     

Silylgruppenwanderung und CO2-Eliminierung beim massenspektrometrischen Zerfall von N-Trifluoracetyl-α-aminosäretrimethylsilylestern

The molecular ions of N-trifluoroacetyl α-amino acid trimethylsilyl esters exhibit a characteristic elimination of CO₂, in contrast to other amino acid derivatives and apparently caused by migration of the ester trimethylsilyl group to the oxygen atom of the N-trifluoroacetyl function. Fragmentation of the [M – CO₂]⁺˙ ions gives rise to a series of intense peaks, especially for the aliphatic amino acid derivatives. In the case of the isomers leucine and isoleucine, different base peaks are formed for the 20 eV spectra. Amino acids which can easily split off a group in their β-position possibly fragment by synchronous elimination of CO₂ and this group. With serine, threonine and cysteine a concurrent ester silyl migration to the oxygen of the β-function is observed, accompanied by the expulsion of CO₂.     

Tetrahedral Oligothiophenes; Synthesis,X‐ray Analysis,and Optoelectronic Properties of Highly Symmetrical, 3D‐Branched Oligothiophenes

Tetrakis(bithienyl)methane and tetrakis(terthienyl)methane have been synthesized from tetrakis(2‐thienyl)methane by use of Suzuki–Miyaura coupling as a key reaction. Their trimethylsilyl (TMS) derivatives are also synthesized. X‐ray analysis reveals that each oligothiophene moiety tends to adopt anti‐conformations and show relatively small torsion angles between the adjacent thiophene rings. While the longest absorption maxima of these tetrakis(oligothienyl)methanes exhibit only a slight bathochromic shift compared to the corresponding linear oligothiophene derivative, tetrakis(bithienyl)methane and its TMS derivative exhibit an appreciable red‐shift in their fluorescence spectra. The intramolecular interaction between thienyl groups of tetrakis(2‐thienyl)methane is supported by DFT calculation.     

Cyclic ions in the mass spectra of trimethylsilyl derivatives of substituted o-dihydroxybenzenes

The mass spectra of trimethylsilyl (TMS) ethers/methyl esters of phenolic acids containing o-dihydroxybenzene groups have base peaks at [M?119]⁺ instead of the usual [M?15]⁺ and [M?31]⁺ that are characteristic of TMS/methyl esters of monohydroxyphenolic acids. These ions, formed by the loss of 31+88 u from the parent ion, possess a cyclic moiety as proven by substitution of deuterium atoms for hydrogen atoms in the TMS groups of the methyl esters of 3,4,5-trihydroxybenzoic (gallic), 3,4-dihydroxybenzoic (protocatechuic) and β-(3,4-dihydroxyphenyl)propenoic (caffeic) acids. Although these cyclic ions are the base peaks in TMS-derivatized o-dihydroxyphenolic acid esters, similar ions represent intense peaks but not necessarily the base peak in other derivatized compounds such as 1,2-dihydroxybenzene, 1,2-dihydroxy-3-methyl- and 1,2-dihydroxy-4-methyl-benzenes and flavan-3-ols that possess o-dihydroxybenzene groups. Compounds possession m- or p-dihydroxybenzene groups do not form these cyclic ions; therefore, this procedure for derivatization and interpretation of mass spectra is valuable for the identification of compounds containing o-dihydroxybenzene groups in complex mixtures of isomeric compounds.