Behaviour of methyl red under fast atom bombardment conditions

The influence of the pH, the nature of the matrix and the presence of a surfactant on the positive- and negative-ion abundances in the molecular mass region in the fast atom bombardment (FAB) mass spectra of methyl red was investigated. A small but significant pH effect was observed which was attributed to the non- or at the most low surface-active character of the intact methyl red molecule. As expected, the more basic the solution, the less protonated molecules with respect to M⁺˙ are observed and in the negative-ion mode less [M + H]^? and more [M – H]^? ions with respect to M^?˙ were found. In contrast to neutral solutions, both acidic and basic solutions give a long-lasting stable response of all methyl red ions. For dyes with a moderately negative redox potential such as methyl red, beam-induced redox reactions seem to play a role in the ionization process, the neutral medium offering the best conditions for reduction processes. The ion intensities in the molecular mass region depend on the nature of the matrix. Protonation of the molecule has been found to be more effective in glycerol than in 3-nitrobenzyl alcohol; the former also appears to offer the best conditions for reduction processes. Anionic and cationic surfactants effectively suppress the contribution of ions from glycerol in both positive- and negative-ion spectra and generally promote the formation of analyte ions at the surface. The most important effect of the surfactant in a neutral medium seems to be the promotion of a regular transport of ions and molecules to the surface, which permits the creation of stable ion currents, instead of an unstable ion beam if the surfactant is absent. Moreover, when the surfactant is present an increase of the sample ion abundances is observed. Redox reactions involving molecules and molecular ions and also molecules and preformed ions in the solution, brought to the surface by micelles, have been proposed to give some contribution for the small but significant enhanced abundance of [M + nH]⁺ (n > 1) ions with respect to [M + H]⁺ ions, in the presence of a surfactant. The results have been rationalized in terms of the surface phenomena while the important role of surfactants for obtaining better FAB mass spectra is emphasized.     

Differentiation among the four diastereomers of benzyloxycarbonyl-protected γ-hydroxyornithine in negative-ion fast atom bombardment mass spectrometry

Discrimination among the four γ-hydroxyornithine diastereomers was studied by fast atom bombardment mass spectrometry (FABMS). It is impossible to distinguish among the four diastereomers of this amino acid by positive- and negative-ion FAB and collisionally activated dissociation MS, but benzyloxycarbonyl group protection of the α- and δ-amino groups in γ-hydroxyornithine allows differentiation among the diastereomers in negative-ion FABMS. The negative-ion mass spectra of benzyloxycarbonyl-protected γ-hydroxyornithine diastereomers showed differences among the abundances of the molecule ion [M – H]^-, the dehydrated ion [M — H — H₂O]^- due to the loss of the γ-hydroxyl group and the fragment ions formed from both [M — H]^- and [M — H — H₂O]^- ions. On the other hand, no difference was found between the fragmentations of the benzyloxycarbonyl-protected enantiomers of ornithine in negative-ion FABMS. These results indicate that the orientation of the γ-hydroxyl group and the existence of two benzene rings in the benzyloxycarbonyl group are important factors which are responsible for the fragmentations of the four benzyloxycarbonyl-protected γ-hydroxyornithine diastereomers in negative-ion FABMS. These studies also showed that the negative-ion FABMS for benzyloxycarbonyl-protected γ-hydroxyornithine diastereomers is a useful method for determining the configuration of each diastereomer of γ-hydroxyornithine.     

Selective reagents in chemical ionization mass spectrometry: Tetramethylsilane with ethers

Chemical ionization mass spectra of several ethers obtained with He/(CH₃)₄Si mixtures as the reagent gases contain abundant [M + 73]⁺ adduct ions which identify the relative molecular mass. For the di-n-alkyl ethers, these [M + 73]⁺ ions are formed by sample ion/sample molecule reactions of the fragment ions, [M + 73 ? C_nH_2n]⁺ and [M + 73 ? 2CnH_2n]⁺. Small amounts of [M + H]⁺ ions are also formed, predominantly by proton transfer reactions of the [M + 73 ? 2CnH_2n]⁺ or [(CH₃)₃SiOH₂]⁺ ions with the ethers. The di-s-alkyl ethers give no [M + 73] ⁺ ions, but do give [M + H]⁺ ions, which allow the determination of the relative molecular mass. These [M + H]⁺ ions result primarily from proton transfer reactions from the dominant fragment ion, [(CH₃)₃SiOH₂]⁺ with the ether. Methyl phenyl ether gives only [M + 73]⁺ adduct ions, by a bimolecular addition of the trimethylsilyl ion to the ether, not by the two-step process found for the di-n-alkyl ethers. Ethyl phenyl ether gives [M + 73]⁺ by both the two-step process and the bimolecular addition. Although the mass spectra of the alkyl etherr are temperature-dependent, the sensitivities of the di-alkyl ethers and ethyl phenyl ether are independent of temperature. However, the sensitivity for methyl phenyl ether decreases significantly with increasing temperature.     

Characterization of N‐Boc/Fmoc/Z‐N′‐formyl‐gem‐diaminoalkyl derivatives using electrospray ionization multi‐stage mass spectrometry

N‐Boc/Fmoc/Z‐N′‐formyl‐gem‐diaminoalkyl derivatives, intermediates particularly useful in the synthesis of partially modified retro‐inverso peptides, have been characterized by both positive and negative ion electrospray ionization (ESI) ion‐trap multi‐stage mass spectrometry (MSⁿ). The MS² collision induced dissociation (CID) spectra of the sodium adduct of the formamides derived from the corresponding N‐Fmoc/Z‐amino acids, dipeptide and tripeptide acids show the [M + Na‐NH₂CHO]⁺ ion, arising from the loss of formamide, as the base peak. Differently, the MS² CID spectra of [M + Na]⁺ ion of all the N‐Boc derivatives yield the abundant [M + Na‐C₄H₈]⁺ and [M + Na‐Boc + H]⁺ ions because of the loss of isobutylene and CO₂ from the Boc protecting function. Useful information on the type of amino acids and their sequence in the N‐protected dipeptidyl and tripeptidyl‐N′‐formamides is provided by MS² and subsequent MSⁿ experiments on the respective precursor ions. The negative ion ESI mass spectra of these oligomers show, in addition to [M‐H]^?, [M + HCOO]^? and [M + Cl]^? ions, the presence of in‐source CID fragment ions deriving from the involvement of the N‐protecting group. Furthermore, MSⁿ spectra of [M + Cl]^? ion of N‐protected dipeptide and tripeptide derivatives show characteristic fragmentations that are useful for determining the nature of the C‐terminal gem‐diamino residue. The present paper represents an initial attempt to study the ESI‐MS behavior of these important intermediates and lays the groundwork for structural‐based studies on more complex partially modified retro‐inverso peptides. Copyright © 2013 John Wiley & Sons, Ltd.     

A laser desorption fourier transform mass spectrometric study of dimethyl 8-acetyl-3,7,12,17-tetramethylporphyrin-2,18-dipropanoate

Laser desorption Fourier transform ion cyclotron resonance positive- and negative-ion mass spectra are presented for dimethyl 8-acetyl-3,7,12,17-tetramethylporphyrin-2,18-dipropanoate. The 248-nm laser ionization thresholds for both positive and negative ions are observed to be about 2.5 MW cm^?2. The M⁺˙ molecular ion is assigned to the base peak in the low-power spectra whereas it is the M^?˙ ion for the corresponding anion spectra. Increased intensities of [M + H]⁺ and [M ? H]^? are observed with increased laser fluences of up to 38 MW cm^?2. At high laser powers the negative-ion results reveal that a series of carbon-nitrogen cumulene and polyacetylene cluster ions are formed. Laser evaporation/multiphoton ionization/ and thermal evaporation/electron impact ionization/collision-induced dissociation experiments carried out on the porphyrin M⁺˙ and [M + H]⁺ ions over a range of translational kinetic energies and delay times after acceleration are compared and used to obtain mechanistic and structural information. In contrast to the electron impact experiments, which show only side-chain cleavage, the laser-based collision-induced dissociation experiments reveal that, in addition to side-chain cleavage, it is possible to cleave the porphyrin ring to various extents depending on the ion translational energy selected.     

甾体磷酰胺类缀合物在电喷雾质谱中的裂解特征

Novel steroidal phosphoramidate conjugates of 3'-azido-2',3'-dideoxythymidine(AZT)and amino acid esterswere synthesized and determined by positive and negative ion electrospray ionization mass spectrometry.The MSfragmentation behaviors of the steroidal phosphoramidate conjugates have been investigated in conjunction withtandem mass spectrometry of ESI-MS/MS.There were three characteristic fragment ions in the positive ion ESImass spectra,which were the Na adduct ions with loss of steroidal moiety,amino acid ester moiety from pseudomolecular ion(M Na)~ ,and the phosphoamino acid methyl ester Na adduct ion by α-cleavage of the phosphora-midate respectively.The main fragment ions in negative ion ESI mass spectra were the ion(M-HN_3)~-,the ion(M-AZT-H)~-,and the ion(M-steroidal moiety-H)~- besides the pseudo molecular ion(M-H)~-.Thefragmentation patterns did not depend on the attached amino acid ester moiety.     

Mass spectral behavior of n-alkynes

The 70 e V-electron impact mass spectra of the C₇–C₁₀ n-alkynes have been determined as well as the metastable ion spectra of the molecular ions and the [CS₂]⁺ and [N₂O]⁺ charge exchange mass spectra of the C₇-C₉ n-alkynes. The metastable ion mass spectra provide only a limited opportunity to distinguish between isomers; however, the 70-eV EI mass spectra of isomeric compounds permit a ready distinction between isomers. The [CS₂]⁺ charge exchange mass spectra of isomeric compounds also show substantial differences. The [N₂O]⁺ charge exchange mass spectra do not show the enhancement of β-fission fragments observed in field ionization experiments, despite representing ions of similar internal energy, and it is concluded that field dissociation is responsible for the β-fission fragments in the field ionization experiments.     

Analysis of amino acid mixtures by plasma desorption mass spectrometry

Plasma desorption mass spectrometry (PDMS) was investigated as a means of analysing mixtures of three, four and five amino acids in both positive- and negative-ion modes. Fifteen mixtures were tested; each mixture contained equimolar amounts of selected amino acids. The PD mass spectra exhibited MH⁺ and [M – H]^? molecular ions for all the aminoacids with different desorption–ionization yields. The spectra were more easily interpreted in the negative- than the positive-ion mode. The desorption order of the amino acids was progressively established by comparing the molecular ion desorption–ionization yields for each mixture. This desorption order was well correlated in both the positive- and negation-ion modes with the acid–base thermodynamic data for the amino acids in the gas phase. This observation gives some insight into the desorption–ionization mechanisms under PDMS conditions.     

Mass spectra of sulfinamide derivatives and identification of their thermal decomposition products

The mass spectra of 30 sulfinamide derivatives (RSONHR', R' alkyl or p-XC₆H₄) are reported. Most of the spectra had peaks attributable to thermal decomposition products. For some compounds these were identified by pyrolysis under similar conditions to be: RSO₂NHR', RSO₂SR, RSSR and NH₂R' (in all kinds of sulfinyl amides); RSNHR' (in the case of arylsulfinyl arylamides); RSO₂C₆H₄NH₂, RSOC₆H₄NH₂ and RSC₆H₄NH₂ (in the case of arylsulfinyl arylamides of the type of X = H) The mass spectra of the three thermally stable compounds showed that there are several kinds of common fragment ions. The mass spectra of the thermally labile compounds had two groups of ions; (i) characteristic fragment ions of the intact molecules and (ii) the molecular ions of the thermal decomposition products. It was concluded that the sulfinamides give the following ions after electron impact: [M]⁺, [M ? R]⁺, [M ? R + H]⁺, [M ? SO]⁺, [RS]⁺, [NHR']⁺, [NHR' + H]⁺, [RSO]⁺, [RSO + H]⁺, [R]⁺, [R + H]⁺, [R']⁺ and [M ? OH]⁺, and that the thermal decomposition products give the following ions: [RSO₂SR]⁺, [RSSR]⁺, [M ? O]⁺, [M + O]⁺ and [RSOC₆H₄NH₂]⁺.     

Laser-induced molecular ion formation and gas-phase ion formation from polycyclic aromatic hydrocarbons,coals and coal products detected by Fourier transform mass spectrometry

The results from the laser-ablation Fourier transform mass spectrometric examination of a variety of polyaromatic hydrocarbons (PAHs), coals and other geochemically related materials are presented. Both molecular and quasi-molecular ions have been detected from different ring-sized PAHs. A relationship between the ease of sodium-adduct ion formation and the size of the aromatic array is observed. Nevertheless, suppression of [M + Na]⁺ ion formation in PAHs can be achieved by the addition of coal. In addition, distributions of low-mass positive- and negative-ion carbon clusters (C_n ⁺, 14 ? n ? 27 and C_n, ^?, 4 ? n ? 30), high-mass positive-ion carbon clusters (C_n⁺, 60 ? n ? 260) and low relative molecular mass organic compounds (< 600 daltons) have been observed from the coals. It appears that the ease of C formation may be used as an indicator of coal rank. Irradiance conditions also influence the observed distribution of high-mass positive-ion carbon clusters. Furthermore, distributions of the high-mass positive-ion carbon clusters at different irradiances supports an earlier proposal that their formation is kinetically controlled.     

Proton transfer and isotope‐induced reaction in aniline cluster ions

The proton transfer (PT) and other intraclusters reactions occurring after electron ionization of aniline clusters (PhNH₂)_N are investigated by the time‐of‐flight mass spectrometry. The mass spectra are recorded for different expansion conditions leading to the generation of different cluster sizes. Several fragment ions are shown to originate from intracluster reactions, namely, [Ph]⁺, [PhNH₃]⁺ and [Ph–N–Ph]⁺. Reaction schemes are proposed for these ions starting with the PT process. The mass region beyond the monomer mass is dominated by cluster ions (PhNH₂)_n⁺ accompanied by satellites with ±H and +2H. In experiments with deuterated species, new fragment ions are identified. The aniline isotopomer d₅‐PhNH₂ yields the fragment ions (PhNH₂)_n?(N–Ph–NH₂)⁺. Analogical series is observed in experiments with d₇‐PhND₂, and additional fragments occur corresponding to (PhND₂)_n?(D₂N–ND–Ph–ND–ND₂)⁺ ions. The possible reaction pathways to these ions and the unusual isotope effects are discussed. Copyright © 2015 John Wiley & Sons, Ltd.     

Development of a new electron ionization/field ionization ion source for gas chromatography/time‐of‐flight mass spectrometry

We have developed a combined EI/FI source for gas chromatography/orthogonal acceleration time‐of‐flight mass spectrometry (GC/oaTOFMS). In general, EI (electron ionization) and FI (field ionization) mass spectra are complementary: the EI mass spectrum contains information about fragment ions, while the FI mass spectrum contains information about molecular ions. Thus, the comparative study of EI and FI mass spectra is useful for GC/MS analyses. Unlike the conventional ion sources for FI and EI measurements, the newly developed source can be used for both measurements without breaking the ion source vacuum or changing the ion source. Therefore, the combined EI/FI source is more preferable than the conventional EI or FI ion source from the viewpoint of the reliability of measurements and facility of operation. Using the combined EI/FI source, the complementarity between EI and FI mass spectra is demonstrated experimentally with n‐hexadecane (100 pg): characteristic fragment ions for the n‐alkane such as m/z 43, 57, 71, and 85 are obtained in the EI mass spectrum, while only the parent peak of m/z 226 (M⁺) without any fragment ions is observed in the FI mass spectrum. Moreover, the field desorption (FD) measurement is also demonstrated with poly(ethylene glycol)s M600 (10 ng) and M1000 (15 ng). Signals of [M+H]⁺, [M+Na]⁺ and [M+K]⁺ are clearly detected in the FD mass spectra. Copyright © 2009 John Wiley & Sons, Ltd.     

Fast atom bombardment mass spectra of some alkylammonium 4-toluenesulfonate salts

The fast atom bombardment positive ion mass spectra of low molecular weight alkylammonium 4-toluenesulfonate salts are dominated by cluster ions of the type [(AB)_nA]⁺ or [(AB)_nH]⁺, where A is a cation, B an anion, n an integer from 0 to 4. With one exception the base peak is the cation A⁺.     

Electron impact ionization mass spectrometry and tandem mass spectrometry of phenylalkylpyridazines

The mass spectrometric fragmentation behaviour of pyridazine and four monosubstituted derivatives containing a pbenylalkyl side-chain (3- and 4-benizylpyridazine, 3- and 4-(2-pbenylethyl)pyridazine) was investigated. In the electron impact ionization mess spectra of the 3-substituted compounds abundant [M – H]⁺ peaks are observed. This allows a clear distinction between 3- and 4-substituted pyridazines, as the spectra of the latter isomers show only very weak [M – H]⁺ signals. The stability of [M – H]⁺ ions derived from 3-alkylpyridazines (deduced from only the very low abundance of further fragment ions) gives strong evidence for a cyclic structure of these ions. One fragmentation pathway typical of the parent pyridazine, the [M - N₂] fragmentation, was not detectable with any of the phenylalkylpyridazines investigated. Instead, loss of HCN, H₃CN⁺ and N²H⁺ was observed. An interesting fragmentation, observed with 3-(2-phenylethyl)pyridazine, is the loss of ⁺CH₃ from the molecular ion and also from the [M – H]⁺ ion.     

Reactions within and between adjacent dimethylamino groups: Collision-induced dissociation tandem mass spectrometric study of the 1,9-bis(dimethylamino)phenalenium cation

The electron impact (EI) ionization-induced fragmentation pathways of the new 1,9-bis(dimethylamino) phenalenium cation [1]⁺ were investigated. The peri-dimethylamino substituents of [1]⁺ are incorporated in a trimethine cyanine substructure and show strong steric interactions. A mechanism is proposed for the unusual elimination of CH₃N?CH₂, HN(CH₃)₂ and (CH₃)₃N from [1]⁺ and for the accompanying cyclizations to heterocyclic ions: prior to fragmentation, the intact cation [1]⁺ rearranges, by reciprocal CH₃ and H transfers, to new isomeric cations which decompose subsequently in a characteristic way. A wealth of consistent information on dissociation pathways and fragment structures is provided by collision-induced dissociation tandem mass spectra, collision-induced dissociation mass-analysed ion kinetic energy spectra and exact mass measurements of the salt cation and of its primary fragment ions. The liquid secondary ion mass spectrum of [1]⁺ is very similar to its EI mass spectrum.     

Electron impact and chemical ionization mass spectra of alkyldiphenylphosphine oxides

In the 70 e V electron impact mass spectra of a series of alkyldiphenylphosphine oxides (R?₂PO, R = Me, Et, n-Pr, i-Pr, n-Bu, i-Bu, t-Bu, neopentyl, n-decyl), molecular ions of low abundance are observed and [M + H]⁺ ions are formed to a small extent at high sample pressures. The major ions include [?₂PO]⁺, [?₂POH]⁺; [?₂CH₂PO]⁺ and [?₂CH₂POH]⁺ which are formed by rearrangement and cleavage processes. The chemical ionization mass spectra obtained with methane and isobutane reagents consist of [M + H]⁺ ions. The proton affinity of R?₂PO was found to be 219 ± 2.5 kcal mol^?1.     

Mass spectra of new heterocycles: XII. Main fragmentation pathways of the molecular ions of 5-methylsulfanyl-1-vinyl-1H-pyrrol-2-amines under electron impact and chemical ionization

Fragmentation patterns of 5-methylsulfanyl-1-vinyl-1H-pyrrol-2-amines under electron impact (70 eV) and chemical ionization (methane as reactant gas) were studied for the first time. The electron impact mass spectra of all the examined compounds contained a strong peak of molecular ion which decomposed along four pathways. Two pathways involved cleavage of the C-S bonds with elimination of methyl (major) and MeS radicals (minor), and the two others, decomposition of the pyrrole ring. The chemical ionization mass spectra displayed strong molecular, [M + H]⁺, and odd-electron [M + H ? SMe]⁺ ion peaks. N,N-Dimethyl-5-methylsulfanyl-4-phenyl-1-vinyl-1H-pyrrol-2-amine under chemical ionization with methane as reactant gas characteristically decomposed with formation of [M ? C₄H₉N]⁺ as the only fragment ion.     

Substitution reactions in the secondary ion mass spectrometry of N-methylpyridinium halides

Secondary ion mass spectra of N-methylpyridinium halides (C⁺X^?, where C⁺ is a pyridinium cation and X^? is a halogen anion) exhibit the C⁺ ions, a series of cluster ions ((C⁺)_n(X^?)_n–1) and, furthermore, remarkable [CX – R]⁺ ions (R = H or Me). The mechanism of the formation of [CX – R]⁺ ions was investigated by the use of deuterated compounds and B/E and B²/E constant linked-scan measurements. A possible explanation is proposed in which the ions are produced through substitution reactions between species constituting the C₂X⁺ cluster ions in the gas phase.     

The loss of SO2H from an imido-sulfite under electron impact: Structural elucidation by collision activation of the resulting fragment

Electron impact mass spectrometry of an imido-sulfite 5,6-benzo-2-imino-N-(2,4,6-trichlorophenyl)-1,3-dioxa-2-thiacycloheptane shows an intense fragment ion corresponding to the expulsion of SO₂H from the molecular ion. A mechanism that requires a rearrangement of the molecular ion is proposed. Structural elucidation of the [M? SO₂H]⁺ ion was obtained by recording its metastable ion and collisional activation spectra. Comparison of these spectra with similar spectra recorded from a precursor ion of known structure demonstrated that they were identical. Thus, the results support the proposed structure which derives from the expulsion of SO₂H from the molecular ion of the compound 5,6-benzo-2-imino-N-(2,4,6-trichlorophenyl)-1,3-dioxa-2-thiacycloheptane.     

Repeller-Induced dissociation of alkyl alcohols in thermospray mass spectrometry

Six alkyl alcohols were studied using thermospray mass Spectrometry. Whereas the dominant ion in the spectrum up to a repeller potential of 120 V was [M + NH₄]⁺, above that potential [M + H]⁺ and fragment ions appeared. The fragments observed were largely due to hydrogen release from alkyl ions ([C_nH_2n+1]⁺ – H2 → [C_nH_2n-1]⁺) and loss of water or some other stable molecule from the same species. The results are compared with those from ionization of the same alcohols under electron impact and photoionization conditions and with results obtained for methanol under thermospray conditions.