Separation and identification of purine nucleosides in the urine of patients with malignant cancer by reverse phase liquid chromatography/electrospray tandem mass spectrometry

Urinary‐modified nucleosides have a potential role as cancer biomarkers for a number of malignant diseases. High performance liquid chromatography (HPLC) was combined with full‐scan mass spectrometry, MS/MS analysis and accurate mass measurements in order to identify purine nucleosides purified from urine. Potential purine nucleosides were assessed by their evident UV absorbance in the HPLC chromatogram and then further examined by the mass spectrometric techniques. In this manner, numerous modified purine nucleosides were identified in the urine samples from cancer patients including xanthine, adenosine, N1‐methyladenosine, 5′‐deoxy‐5′‐methylthioadenosine, 2‐methyladenosine, N6‐threonylcarbamoyladenosine, inosine, N1‐methylinosine, guanosine, N1‐methylguanosine, N7‐methylguanine, N2‐methylguanosine, N2,N2‐dimethyguanosine, N2,N2,N7‐trimethylguanosine. Furthermore, a number of novel purine nucleosides were tentatively identified via critical interpretation of the combined mass spectrometric data including N3‐methyladenosine, N7‐methyladenine, 5′‐dehydro‐2′‐deoxyinosine, N3‐methylguanine, O6‐methylguanosine, N1,N2,N7‐trimethylguanosine, N1‐methyl‐N2‐ethylguanosine and N7‐methyl‐N1‐ethylguanosine. Copyright © 2009 John Wiley & Sons, Ltd.     

A coordinatively flexible hexadentate ligand gives structurally isomeric complexes M2(L)X3 (M = Cu,Zn; X = Br,Cl)

Polypyridyl multidentate ligands based on ethylenediamine backbones are important metal‐binding agents with applications in biomimetics and homogeneous catalysis. The seemingly hexadentate tpena ligand [systematic name: N,N,N′‐tris(pyridin‐2‐ylmethyl)ethylenediamine‐N′‐acetate] reacts with zinc chloride and zinc bromide to form trichlorido[μ‐N,N,N′‐tris(pyridin‐2‐ylmethyl)ethylenediamine‐N′‐acetato]dizinc(II), [Zn₂(C₂₂H₂₄N₅O₂)Cl₃], and tribromido[μ‐N,N,N′‐tris(pyridin‐2‐ylmethyl)ethylenediamine‐N′‐acetato]dizinc(II), [Zn₂Br₃(C₂₂H₂₄N₅O₂)]. One Zn^II ion shows the anticipated N₅O coordination in an irregular six‐coordinate site and is linked by an anti carboxylate bridge to a tetrahedral ZnX₃ (X = Cl or Br) unit. In contrast, the Cu^II ions in aquatribromido[μ‐N,N,N′‐tris(pyridin‐2‐ylmethyl)ethylenediamine‐N′‐acetato]dicopper(II)–tribromido[μ‐N,N,N′‐tris(pyridin‐2‐ylmethyl)ethylenediamine‐N′‐acetato]dicopper(II)–water (1/1/6.5) [Cu₂Br₃(C₂₂H₂₄N₅O₂)][Cu₂Br₃(C₂₂H₂₄N₅O₂)(H₂O)]·6.5H₂O, occupy two tpena‐chelated sites, one a trigonal bipyramidal N₃Cl₂ site and the other a square‐planar N₂OCl site. In all three cases, electrospray ionization mass spectra were dominated by a misleading ion assignable to [M(tpena)]⁺ (M = Zn²⁺ and Cu²⁺).     

N,N,N′,N′,N″‐Pentamethyl‐N″‐[(trifluorosilyl)methyl] phosphoric triamide. First example of the existence of intramolecular PO→Si coordination bond in the Si‐containing phosphoric triamides

The N,N,N′,N′,N″‐pentamethyl‐N″‐(trifluorosilylmethyl)phosphoric triamide O?P(NMe₂)₂N(Me) CH₂SiF₃ with intramolecular P?O→Si coordination was formed by the reaction of N,N,N′,N′,N″‐pentamethyl‐N″[(triethoxysilyl)methyl]phosphoric triamide with BF₃·Et₂O. Copyright © 2007 John Wiley & Sons, Ltd.     

Isolation and characterisation of products from the reactions between [Co2(nta)2(μ-OH)2]2− and different ligands. The crystal structure of [Co(nta)(N,N-Et2en)]

The crystal structure of [Co(nta)(N,N-Et₂en)] (nta = nitrilotriacetate and N,N-Et₂en = N,N-diethylethylenediamine) was determined from three-dimensional X-ray diffraction data. The substituted nitrogen of N,N-diethylethylenediamine is bonded trans to the nta nitrogen with the Co—N_{(N,N Et2en)}= 2.011(5) and Co—N_(nta) = 1.950(4) Å while the cis Co—N bond is 1.953(4) Å. The Co—O bond lengths are 1.905(2) and 1.884(4) Å respectively.     

Synthesis of New C2‐Symmetric Chiral Bisamides from (1S,2S)‐Cyclohexane‐1,2‐dicarboxylic Acid

A series of new C₂‐symmetric (1S,2S)‐cyclohexane‐1,2‐dicarboxamides was synthesized from (1S,2S)‐cyclohexane‐1,2‐dicarbonyl dichloride and N‐benzyl‐substituted aromatic amines, which were prepared from 2‐aminopyridine, 2‐chloroaniline, and 2‐aminophenol via imine formation with benzaldehyde and subsequent reduction with NaBH₄. (1S,2S)‐N,N′‐Dibenzyl‐N,N′‐bis[2‐(benzyloxy)phenyl]cyclohexane‐1,2‐dicarboxamide was converted to (1S,2S)‐N,N′‐dibenzyl‐N,N′‐bis(2‐hydroxyphenyl)cyclohexane‐1,2‐dicarboxamide via hydrogenolysis in the presence of Pd(OH)₂ on active carbon powder.     

Synthesis of 2-amino-4-imino-4,5-dihydrothiazoles from N-sulfonyl-α-chloroamidines and thiourea

A number of new and interesting 2-amino-4-(N-substituted)imino-4,5-dihydrothiazoles were synthesized by reacting thiourea (or thiourea hydrochloride) with N-alkyl- or N,N-dialkyl-N′-p-toluenesulfonyl-α-chloroacetamidines, where the N,N-alkyl groups were ethyl, cyclohexyl, benzyl, β-phenethyl, (3,5-dimethyl-1-adamantyl)-methyl, as well as N,N-dimethyl- and N,N-pentamethylene. Reactions of N-alkyl-N-p-toluenesulfonyl-2-chloroacetamidines (substituents being N-ethyl, N-benzyl and N,N-dimethyl) with thiourea hydrochloride in hot 2-propanol furnished 2-amino-4-(p-toluenesulfonyl)imino-4,5-dihydrothiazole (in 51, 60 and 65% yields, respectively) and the corresponding amine hydrochloride. In hot acetone or butanone, the reactions of these N-sulfonyl-2-chloroacetamidines with excess thiourea provided 2-amino-4-N-(alkyl or N,N-dialkyl)imminium-4,5-dihydrothiazole chlorides in 25–80% yield. The by-product from these reactions was p-toluenesulfonamide. The structures of the products were established by chemical transformations and spectral methods (nmr and mass spectra).     

Bis[μ3‐cis‐N‐(2‐aminopropyl)‐N′‐(2‐carboxylatophenyl)oxamidato(3–)]bis(2,2′‐bipyridine)dichloridotetracopper(II) dihydrate

The title complex, bis[μ₃‐cis‐N‐(2‐aminopropyl)‐N′‐(2‐carboxylatophenyl)oxamidato(3−)]‐1:2:4κ⁷N,N′,N′′,O:O′,O′′:O′′′;2:3:4κ⁷O′′′:N,N′,N′′,O:O′,O′′‐bis(2,2′‐bipyridine)‐2κ²N,N′;4κ²N,N′‐dichlorido‐1κCl,3κCl‐tetracopper(II) dihydrate, [Cu₄(C₁₂H₁₂N₃O₄)₂Cl₂(C₁₀H₈N₂)₂]·2H₂O, consists of a neutral cyclic tetracopper(II) system having an embedded centre of inversion and two solvent water molecules. The coordination of each Cu^II atom is square‐pyramidal. The separations of Cu^II atoms bridged by cis‐N‐(2‐aminopropyl)‐N′‐(2‐carboxylatophenyl)oxamidate(3−) and carboxyl groups are 5.2096 (4) and 5.1961 (5) Å, respectively. A three‐dimensional supramolecular structure involving hydrogen bonding and aromatic stacking is observed.     

Three gemini cationic surfactants as biodegradable corrosion inhibitors for carbon steel in HCl solution

Three gemini cationic surfactants with different hydrophobic spacer chain lengths were synthesized and characterized. The inhibition effect of N,N′-bis(2-hydroxyethyl)-N,N′-dimethyl-N,N′-bis(2-(tetradecanoyloxy)ethyl)ethane-1,2-diaminium bromide (G-2); N,N′-bis(2-hydroxyethyl)-N,N′-dimethyl-N,N′-bis(2-(tetradecanoyloxy)ethyl) hexane-1,6-diaminium bromide (G-6); and N,N′-bis(2-hydroxyethyl)-N,N′-dimethyl-N,N′-bis (2-(tetradecanoyloxy) ethyl) dodecane-1,12-diaminium bromide (G-12) on the corrosion of carbon steel in 1.0 M HCl solution at 25–60 °C was studied by weight loss, potentiodynamic polarization, and electrochemical impedance spectroscopy. The results show that the synthesized inhibitors are effective inhibitors even at very low concentration, and the adsorption on the carbon steel surface obeys the Langmuir adsorption isotherm. Potentiodynamic polarization curves reveal that the synthesized inhibitors behave as a mixed-type inhibitor. Adsorption of used inhibitors led to a reduction in the double layer capacitance and an increase in the charge transfer resistance. Thermodynamic parameters have been obtained by adsorption theory. Surface activity and corrosion inhibition relationship were discussed. The biodegradability of the synthesized surfactants showed their readily biodegradation in the open environment and were considered as environmentally friendly corrosion inhibitors.

     

Comparative X‐ray study of three nickel(II)–thio­cyanate compounds

Three cis nickel–di­thio­cyanate (SCN) complexes with different N,N′‐bidentate bases have been prepared and their crystal structures determined: bis(2,2′‐bi­pyridine‐N,N′)­bis­(thio­cyan‐­ato‐N)­nickel(II), [Ni(SCN)₂­(C₁₀H₈N₂)₂], bis(1,10‐phen­anthroline‐N,N′)­bis­(thio­cyanato‐N)­nickel(II), [Ni(SCN)₂­(C₁₂H₈N₂)₂], and bis(2,9‐di­methyl‐1,10‐phenanthroline‐N,N′)­bis­(thiocyanato‐N)nickel(II) mono­hydrate, [Ni(SCN)₂­(C₁₂H₈N₂)₂]·H₂O. Distortions due to ligand size are discussed.     

Cyclocopolymerization of allyl‐acrylate quaternary ammonium salts with diallyldimethylammonium chloride

A series of copolymers of N,N‐dialkyl‐N‐2‐(methoxycarbonyl)allyl allyl ammonium chloride, N,N‐dialkyl‐N‐2‐(ethoxycarbonyl)allyl allyl ammonium chloride, and N,N‐dialkyl‐N‐2‐(t‐butoxycarbonyl)allyl allyl ammonium bromide with diallyldimethylammonium chloride (DADMAC) were prepared in water at 60 °C with 2,2′‐azo‐bis(2‐amidinopropane)dihydrochloride. A strong effect of ester substituents on cyclopolymerization was observed. The methyl and ethyl ester monomers showed high cyclization efficiencies during homopolymerizations and copolymerizations. Unexpectedly, the t‐butyl ester derivatives showed high crosslinking tendencies. Water‐soluble copolymers were obtained only with a decrease in the molar fraction of t‐butyl ester monomer below 30%. Relative reactivities of the allyl‐acrylate monomers in photopolymerizations were compared with the relative reactivity of DADMAC. Allyl‐acrylate monomers were much more reactive than DADMAC; the photopolymerization rate decreased in the following order: N,N‐morpholine‐N‐2‐(t‐butoxycarbonyl)allyl allyl ammonium bromide > N,N‐piperidyl‐N‐2‐(t‐butoxycarbonyl)allyl allyl ammonium bromide > N,N‐dibutyl‐N‐2‐(ethoxycarbonyl)allyl allyl ammonium chloride > N,N‐piperidyl‐N‐2‐(ethoxycarbonyl)allyl allyl ammonium chloride ∼ N,N‐morpholine‐N‐2‐(ethoxycarbonyl)allyl allyl ammonium chloride ∼ N,N‐piperidyl‐N‐2‐(methoxycarbonyl)allyl allyl ammonium chloride > N‐methyl‐N‐butyl‐N‐2‐(ethoxycarbonyl)allyl allyl ammonium chloride. Intrinsic viscosities of the polymers measured in 0.09 M NaCl ranged from 1.06 to 3.20 dL/g. The highest viscosities were obtained for copolymers of the t‐butyl ester monomers with piperidine and morpholine substituents. The copolymer of the t‐butyl ester with piperidine substituent and DADMAC was hydrolyzed in acid to give a polymer with zwitterionic character. © 2001 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 39: 640–649, 2001     

Syntheses and X-ray crystal structures of five- and six-coordinate copper(II) complexes of N,N,N′,N′-tetraalkylpyridine-2,6-dicarboxamides containing–OClO3 and–OSO2CF3 counter ions

Reactions of anhydrous copper(II) chloride with NaX (1 : 1 or 1 : 2) and AgX (1 : 2) containing appropriate N,N,N′,N′-tetraalkylpyridine-2,6-dicarboxamides(O-daap) in CH₃CN yield monosubstituted five-coordinate [Cu(L₁)Cl(CF₃SO₃)] (1), [Cu(L₂)Cl(ClO₄)] (2), [Cu(L₃)Cl(ClO₄)] (3), and six-coordinate [Cu(L₂)(CF₃SO₃)₂] · H₂O (4) (X = ?OClO₃ and–OSO₂CF₃; L₁ = N,N,N′,N′-tetraethylpyridine-2,6-dicarboxamides; L₂ = N,N,N′,N′-tetraisopropylpyridine-2,6-dicarboxamides; L₃ = N,N,N′,N′-tetraisobutylpyridine-2,6-dicarboxamides). The structures of these complexes have been determined by X-ray crystallography. The Cu²⁺ in 1–3 adopts distorted square-pyramidal geometry, while 4 exhibits octahedral structure. Steric factors in conjunction with lattice effects and the nature of the anions are responsible for the variety in coordination spheres. These compounds undergo extensive intermolecular H-bonding to give to 2-D sheets extending along various planes.     

Synthesis and biological activity of <Emphasis Type="Italic">N</Emphasis>-(2-hydroxyethyl)cytisine derivatives

Derivatives of N-(2-hydroxyethyl)cytisine, N-(2-hydroxypropyl)-, N-(2-hydroxy-2-(1-adamantyl)ethyl)-, and N-(2-hydroxy-2-phenylethyl)cytisine, were synthesized by reduction of N-(2-oxopropyl)-, N-(2-oxo-2-(1-adamantyl)ethyl)-and N-(2-oxo-2-phenylethyl)cytisine with metal hydrides. The antiarrhythmic and analgesic activities of the prepared compounds were investigated. __________ Translated from Khimiya Prirodnykh Soedinenii, No. 2, pp. 157–162, March–April, 2007.     

Synthesis and activity of four (N,N‐dimethylamino)benzamide nonsteroidal anti‐inflammatory drugs based on thiazole and thiazoline

Four compounds derived from 2‐aminothiazole and 2‐amino‐2‐thiazoline were prepared by coupling the respective bases with the acid chlorides of either 3‐ or 4‐(N,N‐dimethylamino)benzoic acid. Products were identified using infrared spectroscopy, ¹H NMR spectroscopy and electrospray mass spectroscopy and in two cases by single‐crystal X‐ray diffraction. Of the four, N‐(thiazol‐2‐yl)‐3‐(N,N‐dimethylamino)‐benzamide (1), N‐(thiazolin‐2‐yl)‐4‐(N,N‐dimethylamino)benzamide (2), N‐(thiazolin‐2‐yl)‐3‐(N,N‐dimethylamino) benzamide (3) and N‐(thiazolin‐2‐yl)‐4‐(N,N‐dimethylamino)benzamide (4), the hydrochloride salts of compounds 3 and 4 showed anti‐inflammatory activity across a concentration range of 10^?2?5 × 10^?4 M while 3 (at a concentration of 10^?5 M) was found to have no adverse effect on myocardial function. The X‐ray crystal structure of 2 and the 1:1 adduct structure of 3 with 3‐(N,N‐dimethylamino)benzoic acid are reported.     

Si-Containing Amides of Phosphoric Acid

The first representative of the N-silylmethylamides of phosphoric acid O=P[NMe(CH₂SiMe _n (OEt)_3-n ]₃ have been synthesized by interaction of MeNHCH₂SiMe _n (OEt)_3-n (n = 2, 3) with POCl₃. The interaction of the N,N′,N″-trimethyl-N,N′,N″-tris[(ethoxydimethyl- silyl)methyl]triamide phosphoric acid with BF₃·Et₂O or BCl₃ results in the formation of the N,N′,N″-trimethyl-N,N′,N″-tris[(fluorodimethyl-silyl)methyl]triamide phosphoric acid or N,N′,N″-trimethyl-N,N′,N″-tris[(chlorodimethylsilyl)methyl]triamide phosphoric acid. NMR data show on the tetracoordinate state of silicon in these products.     

The use of MM/QM calculations of 13C and 15N chemical shifts in the conformational analysis of alkyl substituted anilines

The calculation of the ¹³C and ¹⁵N NMR chemical shifts by a combined molecular mechanics (Pcmodel 9.1/MMFF94) and ab initio (GIAO (B3LYP/DFT, 6-31 + G(d)) procedure is used to investigate the conformations of a variety of alkyl substituted anilines. The ¹³C shifts are obtained from the GIAO isotropic shielding (Ciso) with separate references for sp³ and sp² carbons (δc = δref − Ciso). The ¹⁵N shifts are obtained similarly from the GIAO isotropic shielding (Niso) with reference to the ¹⁵N chemical shift of aniline. Comparison of the observed and calculated shifts provides information on the molecular conformations. Aniline and the 2,6-dialkylanilines exist with a rapidly inverting symmetric pyramidal nitrogen atom. The 2-alkylanilines have similar conformations with the NH₂ group tilted away from the 2-alkyl substituent. The N,N-dialkylanilines show more varied conformations. N,N-dimethylaniline has a similar structure to aniline, but N-ethyl, N-methylaniline, N,N-diethylaniline, and N,N-diisopropylaniline are conformationally mobile with two rapidly interconverting conformers. In contrast, the anilines substituted at C₂ and the nitrogen atom exist as one conformer where the steric interaction between the C₂ substituent and the N substituent determines the conformation. In 2-methyl-N-methylaniline, the nitrogen atom is pyramidal as usual with the N-methyl opposite to the 2-methyl, but in 2-methyl-N,N-dimethyl aniline, the NMe₂ group is now almost orthogonal to the phenyl plane. This is also the case with 2-methyl-N,N-diethylaniline and 2,6-diisopropyl-N,N-dimethylaniline. The comparison of the observed and calculated ¹⁵N chemical shifts confirms the above findings, in particular the pyramidal conformation of aniline and the above observations with respect to the conformations of the N,N-dialkylanilines.     

Five N′‐benzylidene‐N‐methylpyrazine‐2‐carbohydrazides

The compounds N′‐benzylidene‐N‐methylpyrazine‐2‐carbohydrazide, C₁₃H₁₂N₄O, (IIa), N′‐(2‐methoxybenzylidene)‐N‐methylpyrazine‐2‐carbohydrazide, C₁₄H₁₄N₄O₂, (IIb), N′‐(4‐cyanobenzylidene)‐N‐methylpyrazine‐2‐carbohydrazide dihydrate, C₁₄H₁₁N₅O·2H₂O, (IIc), N‐methyl‐N′‐(2‐nitrobenzylidene)pyrazine‐2‐carbohydrazide, C₁₃H₁₁N₅O₃, (IId), and N‐methyl‐N′‐(4‐nitrobenzylidene)pyrazine‐2‐carbohydrazide, C₁₃H₁₁N₅O₃, (IIe), have dihedral angles between the pyrazine rings and the benzene rings in the range 55–78°. These methylated pyrazine‐2‐carbohydrazides have supramolecular structures which are formed by weak C—H...O/N hydrogen bonds, with the exception of (IIc) which is hydrated. There are π–π stacking interactions in all five compounds. Three of these structures are compared with their nonmethylated counterparts, which have dihedral angles between the pyrazine rings and the benzene rings in the range 0–6°.     

Synthesis,structure, electrochemical properties,and antioxidant activities of copper(II) and zinc(II) complexes with N,N-bis(N-ethyl-2-ylmethylbenzimidazol)allylamine ligand

N,N-bis(N-methyl-2-ylmethylbenzimidazole)aniline (EtAIDB) and its transition metal complexes, [Cu(EtAIDB)Br₂]·EtOH {dibromo[N,N-bis(N-methyl-2-ylmethylbenzimidazole)aniline] copper(II) ethanol} (1) and [Zn(EtAIDB)Br₂] {dibromo[N,N-bis(N-methyl-2-ylmethylbenzimidazole)aniline] zinc(II)} (2), have been synthesized and characterized by elemental analysis, molar conductivity, UV–visible, and IR spectroscopy. The X-ray crystallographic studies of 1 and 2 have shown two different arrangements: 1 is distorted square-based pyramidal, while 2 can be treated as distorted tetrahedral. The cyclic voltammogram of 1 represents quasi-reversible Cu²⁺/Cu⁺ pairs. In vitro antioxidant tests showed that 1 had significant antioxidant activity against superoxide and hydroxy radicals.     

Micellization of some amphiphilic quaternary ammonium chlorides

The micellization processes of N-dodecyl-N,N-dimethyl-N-[3-(β-methyl-β-nitrovinyl)-6-methoxybenzyl] ammonium chloride (I-A), N-dodecyl-N,N-dimethyl-N-benzylammonium chloride (I-B), N-dodecyl-N, N,N-trimethylammonium chloride (I-C), N-dodecyl-[3-(β-methyl-β-nitrovinyl)-4-methoxybenzyl] morpholinium chloride (IV-A), N-dodecyl-N-benzylmorpholinium chloride (IV-B), N-dodecyl-N-methylmorpholinium chloride (IV-C), and N-dodecyl-N-methylpiperidinium chloride (VI-C) were studied by means of the calorimetric titration method. The critical micelle concentrations and enthalpies of micellization were determined. It is suggested that the benzyl groups of I-B and IV-B and the nitrovinylbenzyl groups of I-A and IV-A behave as second chains during the micellization.     

Reactions of <Emphasis Type="Italic">N</Emphasis>-and <Emphasis Type="Italic">C</Emphasis>-Alkenylanilines: VII. Synthesis of Indole Heterocycles from Products of Reaction between <Emphasis Type="Italic">N</Emphasis>-Mesyl-2-(1-alken-1-yl)anilines and Halogens

N-Mesyl-2-(1-methyl-1-butenyl)-6-methylaniline reacted with Br₂ to afford N-mesyl-2-(3-bromo-1-penten-2-yl)aniline that under treatment with NH₃ or amines underwent cyclization into N-mesyl-7-methyl-3-methylene-2-ethylindoline. The reaction of N-mesyl-2-(1-methyl-1-buten-1-yl)-4-methyl- and 2-(1-methyl-1-buten-1-yl)aniline with Br₂ gave rise to the corresponding N-mesyl-2-(2-bromo-1-methyl-1-buten-1-yl)anilines. Under the similar conditions N-tosyl-2-(1-cyclohexen-1-yl)aniline was converted into N-tosyl-2-(6-bromo-1-cyclohexen-1-yl)aniline that under treatment with NH₃ furnished N-tosyl-1,2,3,9a-tetrahydrocarbazole. The reaction of N-mesyl-1,2,3,9a-tetrahydrocarbazole with CuBr₂ in MeOH afforded N-mesyl-4-methoxy-1,2,3,4-tetrahydrocarbazole. N-Mesyl-6-methyl-2-(1-cyclopenten-1-yl)aniline in reaction with Br₂ in the presence of NaHCO₃ was oxidized into the corresponding cyclopentenone, and with NBS it gave N-mesyl-2-(2-bromo-1-cyclopenten-1-yl)aniline.__________Translated from Zhurnal Organicheskoi Khimii, Vol. 41, No. 5, 2005, pp. 730–737.Original Russian Text Copyright © 2005 by Gataullin, Sotnikov, Spirikhin, Abdrakhmanov.