Spectra and structure of silicon compounds. XVII Raman and infrared spectra and vibrational assignment for hexamethyldisilane and ab initio calculations for disilane and hexamethyldisilane

The IR spectra of gaseous and solid hexamethyldisilane between 4000 and 25 cm⁻¹ and the far-IR spectrum of the liquids from 450 to 25 cm⁻¹ have been recorded. The Raman spectra have been recorded from 3500 to 10 cm⁻¹ for all three physical phases. Assisted by ab initio calculations, the vibrational spectrum of hexamethyldisilane has been assigned under D_3d symmetry and the results of a normal coordinate analysis are discussed. No spectral features indicative of free internal rotation have been observed. Gradient ab initio calculations have been carried out for the disilane and hexamethyldisilane molecules using different types of basis sets. The structural parameters, rotational constants, unscaled and scaled frequencies and harmonic force constants have been reported for both disilane and hexamethyldisilane.     

Scaled quantum chemical studies of the structural and vibrational spectra of acetyl coumarin

The solid phase FT-IR and FR-Raman spectra of acetyl coumarin have been recorded in the regions 4000–50 cm⁻¹. The spectra were interpreted with the aid of normal coordinate analysis following full structure optimization and force field calculations based on density functional theory (DFT) and Hartree-Fock (HF) at 6–31G* and 6–311++G** basis sets. The resulting force fields were transformed to internal coordinates, the calculated vibrational frequencies and normal modes were utilized in the assignment of the observed vibrational fundamentals. The measured spectral data were used to refine the vibrational force constants by means of a small number of scaling factors.     

Vibrational spectra and molecular conformations of 1,5-dichloro- and 1,5-dibromopentanes and 1,6-dichloro-and 1,6-dibromohexanes

The Raman and IR spectra of 1,5-dichloro- and 1,5-dibromopentanes and 1,6-dichloro-and 1,6-dibromohexanes have been measured. The normal coordinates have been calculated for these molecules using a consistent set of force constants and the molecular conformations studied by analysing the spectra with reference to the results of the calculations. In the crystalline solid state, 1,5-dichloropentane assumes the trans-trans-trans-gauche form and 1,5-dibromopentane, 1,6-dichloro- and 1,6-dibromohexanes assume the all-trans form. The normal coordinate treatment with the well-established force field was of great help in determining the whole molecular form of the relatively large chain molecules.     

Ab initio/DFT electronic structure calculations, spectroscopic studies and normal coordinate analysis of 2-chloro-5-bromopyridine

FT-IR (4000-400 cm(-1)) and FT-Raman (3500-50 cm(-1)) spectral measurements of solid sample of 2-chloro-5-bromopyridine have been done. Ab initio and DFT calculations have been performed giving energies, optimized structures, harmonic vibrational frequencies, depolarization ratios, IR intensities, Raman activities and atomic displacements. Furthermore, force field calculations have been performed by normal coordinate analysis. A complete assignment of the observed spectra, based on spectral correlations, electronic structure calculations and normal coordinate analysis, has been proposed. The results of the calculations have been used to simulate IR and Raman spectra for the molecule that showed good agreement with the observed spectra. The SQM method, which implies multiple scaling of the DFT force fields, has been shown superior to the uniform scaling approach. The energy and oscillator strength calculated by Time-dependent DFT results are in good agreement with the experimental results.     

The Raman and IR spectra and normal coordinate analysis of 3-(N-phenylacetylamino)-2,6-piperidinedione,Antineoplaston A10, the new antitumour drug

The Raman and IR spectra of 3-(N-phenylacetylamino)-2,6-piperidinedione, Antineoplaston A10, the new antitumour drug and its N,N-dideuterated derivative have been recorded in the range 4000-30 cm⁻¹. Vibrational assignments are given and are supported by normal coordinate calculations based on a general valence force field. The interaction force constants were transferred intact from the scaled ab initio force fields of structurally related molecules. The calculated frequencies are in very good agreement with the experiment. A striking similarity is noted for frequencies of the corresponding vibrations in Antineoplaston A10 and in uracil derivatives. The results obtained support previous theoretical predictions that the mechanism of action of A10 may be related to its structural and electronic resemblance with pyrimidine bases. The drug may act as their antagonist in the electrostatic interaction and hydrogen bonding formation with biological molecules.     

Synthese,Kernresonanzspektren und Schwingungsspektren der Hexamethyltrisilane und Pentamethyltrisilane (XMe2Si)2SiMe2 und (XMe2Si)2SiMeX (XH,F, Cl,Br, I,Ph, OMe)

The syntheses, IR, Raman and ²⁹Si spectra of the title compounds are reported. SiSi force constants, calculated with the aid of normal coordinate analyses, are compared with ²⁹Si²⁹Si coupling constants.     

Application of potential constants: Electronic chemical potentials of polyatomic molecules—VIII

A new approach for the calculation of electronic chemical potentials of polyatomic systems is developed by applying the quadratic potential (force) constants which are available from normal coordinate analyses using spectroscopic data. The approach is constructed within the framework of density-functional theory into which the simple bond-charge model is incorporated. To evaluate the utility of such an approach, we have calculated electronic chemical potentials for various kinds of polyatomic molecules, and the calculated results have been compared favorably with experimental values as well as those obtained from ab initio SCF calculations. It seems that this approach offers the possibility of chemical potential calculations for polyatomic molecules whose quadratic stretching force constants are obtained by normal coordinate analyses.     

Ab initio study of the vibrational assignment and force field of thiosemicarbazide-d0 and -d5

The complete harmonic force field and optimized geometry of thiosemicarbazide have been calculated at the ab initio Hartree—Fock level using the 3-21G basis set. On the basis of this, the frequencies of thiosemicarbazide-d₀ and -d₅ and their ¹⁵N isotopic molecules have been calculated. The calculated frequencies and their band assignments are utilized to critically examine our previous experimental assignments which were based on normal coordinate calculations. The theoretical IR and Raman intensities, together with qualitative experimental band intensities, are also presented.     

Vibrational spectra of β-lactams—III. potassium 2-azetidinone-1-sulfonate and its isotopic compounds

The IR and Raman spectra of potassium 2-azetidinone-1-sulfonate and its three deuterated and two ¹⁵N-substituted compounds have been recorded, and the observed bands have been assigned on the basis of the isotope effects and the normal coordinate analysis. Comparison of the force constants for the amide group among 2-azetidinone, 1-methyl-2-azetidinone and potassium 2-azetidinone-1-sulfonate indicates that there is a correlation between these constants and the ease of hydrolysis which was determined by NMR spectroscopy, depending on the amide resonance.     

Vibrational analysis of the imidazolate ring

IR and Raman spectra have been investigated for imidazolate and 4-methylimidazolate including five and three deuterated analogs, respectively. Assignment of the observed IR and Raman bands has been made on the basis of isotopic frequency shifts, Raman polarization properties, and normal coordinate calculations. The calculated normal frequencies are in good agreement with experimental ones: the average error below 1600 cm⁻¹ is 4.5 cm⁻¹ for 104 in-plane vibrations and 3.8 cm⁻¹ for 43 out-of-plane vibrations. The calculated vibrational modes are useful in analyzing the Raman bands of histidine residues in proteins.     

Infrared spectra and normal coordinate analysis of bis(ethylenediamine) and bis(trimethylenediamine) complexes with copper(II)

The i.r. spectra of bis(ethylenediamine) and bis(trimethylenediamine) complexes of Cu(II) have been measured in the wave number region of 4000-250 cm⁻¹. Vibrational assignments have been made regarding the individual rings in both complexes. A normal coordinate analysis was performed using a modified general valence force field in order to check the empirical assignments. The agreement between the observed and calculated frequencies is satisfactory in view of the approximation used. A set of reliable force constants concerning most of the in-plane normal modes is obtained for the first time.     

陆森红盐阴离子[Fen_2S_2(No)_4]~(2-)红外光谱的归属

本文报导陆森红盐阴离子简正坐标分析及计算所得的一套力常数。由这套力常数所得的红外光谱波数的计算值与观察值吻合良好,加权平方偏差之和为0.223。根据对称内坐标和力常数的位能分布计算,进行了阴离子的红外光谱的归属。     

Ab-initio molecular geometry and normal coordinate analysis of pyrrolidine molecule.

The molecular geometry of pyrrolidine was quantum mechanically calculated using the split valence 6-31G** basis set. Electron correlation energy has been computed employing MP2 method. The molecule showed an envelope form puckered structure with inter-plane angle of 36.4 degrees and has a total energy of -132976.80 kcal mol(-1) of which a -464.86 kcal mol(-1) electron correlation energy. The twist form of the molecule showed a twist angle of 10.2 degrees from planarity and has a total energy of -132976.05 kcal mol(-1) involving -464.097 kcal mol(-1) electron correlation energy. The normal coordinates of the molecule were theoretically analyzed on the basis of the Cs point symmetry of the envelope form. Using initial set of force constants obtained from the ab-initio calculations the fundamental vibrational frequencies were computed. The IR and laser Raman spectra of Pyrrolidine molecules were measured. All the observed vibrational bands including combination bands and overtones were assigned to normal modes with the aid of the potential energy distribution values obtained from normal coordinate calculations. The molecular force field was obtained by refining the initial set of force constants using the least square fit method. The molecular force field was determined by refining the initial set of force constants using the least square fit method instead of using the less accurate scaling factor methods. The determined molecular force field has produced simulated frequencies best match to the observed values. The low frequency molecular out-of-plane deformation modes were observed in both infrared and Raman spectra at 298 and 163 cm(-1). The barrier of ring twisting estimated from the observed ring out-of-plane vibrational mode at 163 cm(-1) was found 3.1 kcal mol(-1).     

Experimental and theoretical investigations of benzamide oxime

The FT-IR (4000-400 cm(-1)) and FT-Raman (4000-100 cm(-1)) spectral measurements of benzamide oxime and complete assignments of the observed spectra have been proposed. Ab initio and DFT calculations have been performed giving energies, optimized structures, harmonic vibrational frequencies, depolarization ratios, IR intensities, Raman activities and atomic displacements. Furthermore, force field calculations have been performed by normal coordinate analysis. Force field calculations showed that several normal modes are mixed in terms of the internal coordinates. A complete assignment of the observed spectra, based on spectral correlations, electronic structure calculations and normal coordinate analysis, has been provided.     

Spectra and Structure of Silicon-Containing Compounds. XXVIII1 Infrared and Raman Spectra,Vibrational Assignment,and Ab Initio Calculations of Vibrational Spectrum and Structural Parameters of Vinyltrichlorosilane

The infrared spectra (3200-50 cm^–1) of gaseous and solid vinyltrichlorosilane, CH₂=CH-SiCl₃, have been recorded. In addition, the Raman spectrum (3200-10 cm^–1) of the liquid has been recorded and quantitative depolarization values obtained. The infrared spectrum of the sample dissolved in liquid xenon (–80°C) has also been recorded. Using the experimental data and normal coordinate calculations with scaled ab initio force constants, the complete vibrational assignment is proposed. The torsional mode was observed in the infrared spectrum of the gas at 69 cm^–1 and the threefold barrier of internal rotation was calculated to be 500 cm^–1 (5.98 kJ/mol). Ab initio calculations have been carried out at the restricted Hartree–Fock level of the theory as well as with full electron correlation by the perturbation method to second order with different basis sets up to 6-311+G(d,p) to obtain the optimized geometries, harmonic force constants, infrared intensities, Raman activities, depolarization ratios, and vibrational frequencies. The ab initio predicted structural parameters are compared with those obtained from a previous electron diffraction study.     

Vibrational fundamentals and natural bond orbitals analysis of some tri-fluorinated benzonitriles in ground state

The theoretical IR and Raman spectra of the 2,3,4-, 2,3,6-, 2,4,5- and 3,4,5-tri-fluorobenzonitrile molecules have been calculated by using the density functional method in the ground state. The rigorous normal coordinate analyses based upon both an empirical force field and quantum chemical calculations have been performed and the detailed vibrational assignment has been made on the basis of the calculated potential energy distributions (PEDs). A comparison of molecular geometries, atomic charges and vibrational fundamentals of these molecules has been reported. The effects of fluorination upon the geometries, atomic charges and vibrational frequencies of benzonitrile have been discussed. Several ambiguities and contradictions in the previously reported vibrational assignments have been clarified. In addition, the variation of Raman intensity with excitation frequency and with temperature has also been studied.     

Theoretical study of the force field and vibrational assignments of acetamide and deuterated analogues

The complete harmonic force constants of acetamide have been evaluated by ab initio calculations at the Hartree-Fock level with the 4–31G(d) basis set. The force field was scaled to compensate for the systematic overestimations of the Hartree-Fock-level force constants by empirical factors using the matrix isolation IR spectra of CH₃CONH₂ and CD₃CONH₂. A normal coordinate treatment has been carried out with the scaled force field to analyze the vibrational spectra of CH₃CONH₂. A normal coordinate treatment has been carried out with the scaled force field to analyze the vibrational spectra of CH₃COND₂, cis-CH₃CONHD and trans-CH₃CONHD. The effect of cis/trans isomerism of CH₃CONHD on the fundamental bands was well reproduced by the calculations. The fundamental vibrations were also predicted for CD₃COND₂, cis-CD₃CONHD and trans-CD₃CONHD.     

Ab-initio molecular geometry and normal coordinate analysis of tetrahydrothiophene molecule.

The molecular geometry of tetrahydrothiophene (THT) was quantum mechanically calculated using the split valence 6-31G** basis set. Electron correlation energy has been computed employing MP2 method. The molecule showed a twist form puckered structure with a twist torsion angle of 13 degrees and has a total energy of -347,877.514 kcal/mol of which a 436.715 kcal/mol electron correlation energy. The envelope form of the molecule showed an inter-plane angle of 22 degrees and has a total energy of -347,874.430 kcal/mol involving -436.558 kcal/mol electron correlation energy. The normal coordinates of the molecule were theoretically analyzed and the fundamental vibrational frequencies were calculated. The IR and laser Raman spectra of THT molecule was measured. All the observed vibrational bands including combination bands and overtones were assigned to normal modes with the aid of the potential energy distribution values obtained from normal coordinate calculations. The molecular force field was determined by refining the initial set of force constants using the least square fit method instead of using the less accurate scaling factor methods. The determined molecular force field has produced simulated frequencies which best match the observed values. The lowest-energy modes of vibration were two molecular out-of-plane deformations, observed at 114 and 166 cm(-1). The barrier of ring twisting estimated from the observed ring out-of-plane vibrational mode at 114 cm(-1) was estimated.     

Harmonic dynamics of alpha- and beta-methyl-D-galactopyranoside in the crystalline state

The study of the anomeric differences observed on the spectra of methyl-alpha- and methyl-beta-D-galactopyranoside is the essential goal of this investigation. Thus, after a careful examination of the IR and Raman spectra of these two compounds, several differences in the intensities and frequency shifts are observed. This is especially noted in the region 1000-700 cm(-1). In order to make some assignments with more precision, the normal modes analyses of the two compounds are performed in the crystalline state. For this purpose, a modified Urey-Bradley-Shimanouchi force field has been combined with an intermolecular potential energy function. The initial set of force constants comes from those of alpha- and beta-D-galactopyranosyl, then the force constants have been varied, so as to obtain a good agreement between the observed and the calculated vibrational frequencies. The obtained results have finally reproduced the experimental data and have confirmed the previous assignments made for the methyl-alpha- and methyl-beta-D-galactopyranoside. The calculations have demonstrated also the transferability of the set of parameters of the initial force field of D-galactose to methyl-D-galactopyranoside.     

Vibrational analysis of flavin derivatives: Normal coordinate treatments of lumiflavin

Normal coordinate calculations were carried out for lumiflavin (Lf) and isotope- or methyl-substituted derivatives of it; [3-ND]Lf, [3-NMe]Lf, [2-¹³C]Lf, [4a-¹³C]Lf, [5-¹⁵N]Lf, [1, 3-¹⁵N]Lf and [1, 3, 5-¹⁵N]Lf. Using 69 force constants of the modified local symmetry force field, the observed resonance Raman bands and i.r. bands of these molecules could be assigned to the normal modes. The vibrational modes are represented in terms of the calculated atomic displacement vectors.