Comparison of Hydrogen and Gold Bonding in [XHX]−, [XAuX]−, and Isoelectronic [NgHNg]+, [NgAuNg]+ (X=Halogen,Ng=Noble Gas)

Quantum chemical calculations at the MP2/aug‐cc‐pVTZ and CCSD(T)/aug‐cc‐pVTZ levels have been carried out for the title compounds. The electronic structures were analyzed with a variety of charge and energy partitioning methods. All molecules possess linear equilibrium structures with D_∞h symmetry. The total bond dissociation energies (BDEs) of the strongly bonded halogen anions [XHX]^? and [XAuX]^? decrease from [FHF]^? to [IHI]^? and from [FAuF]^? to [IAuI]^?. The BDEs of the noble gas compounds [NgHNg]⁺ and [NgAuNg]⁺ become larger for the heavier atoms. The central hydrogen and gold atoms carry partial positive charges in the cations and even in the anions, except for [IAuI]^?, in which case the gold atom has a small negative charge of ?0.03 e. The molecular electrostatic potentials reveal that the regions of the most positive or negative charges may not agree with the partial charges of the atoms, because the spatial distribution of the electronic charge needs to be considered. The bonding analysis with the QTAIM method suggests a significant covalent character for the hydrogen bonds to the noble gas atoms in [NgHNg]⁺ and to the halogen atoms in [XHX]^?. The covalent character of the bonding in the gold systems [NgAuNg]⁺ and [XAuX]^? is smaller than in the hydrogen compound. The energy decomposition analysis suggests that the lighter hydrogen systems possess dative bonds X^?→H⁺←X^? or Ng→H⁺←Ng while the heavier homologues exhibit electron sharing through two‐electron, three‐center bonds. Dative bonds X^?→Au⁺←X^? and Ng→Au⁺←Ng are also diagnosed for the lighter gold systems, but the heavier compounds possess electron‐shared bonds.     

Computationally rational design of metal-involving halogen bonds with π-covalency: Structures and bonding analysis

Traditional π-covalent interactions have been proved in the non-metal halogen bond adducts formed by chloride and halogenated triphenylamine-based radical cations. In this study, we have rationally designed two metal-involving halogen bond adducts with π-covalency property, such as [L1-Pd···I-PTZ]⁺ (i.e., 1) and [L2-Pd···I-PTZ]⁺ (i.e., 2), in which the square-planar palladium complexes serve as halogen bond acceptor and 3,7-diiodo-10H-phenothiazine radical cation (i.e., [I-PTZ]^•+) acts as halogen bond donor. Noncovalent interaction analysis and quantum theory of atoms in molecules analysis revealed that there are notable halogen bond interactions along the Pd···I direction without genuine chemical bond formed in both designed adducts. Energy decomposition analysis together with natural orbital for chemical valence calculations were performed to gain insight into their bonding nature, which demonstrated the presence of remarkable π-covalent interactions and σ-covalent interactions in both 1 and 2. We therefore proposed a new strategy for building the metal-involving halogen bonds with π-covalency property, which will help the further development of new types of halogen bonds.     

Behaviour of isomeric methyl ethyl and ethyl methyl halosuccinates under electron impact. Elimination of a halogen atom by a multi-step mechanism

The electron impact mass spectra of isomeric methyl ethyl and ethyl methyl halosuccinates (X = Cl and Br) are surprisingly different. Only the isomers with the ethyl group remote from the halogen give rise to [M - X]⁺ ions. A low-energy collision-induced dissociation study of deuterium-labelled analogues of the former isomers indicates that the [M - X]⁺ ions are mixtures of protonated methyl ethyl maleate (major component, > 85%) and fumarate, and the loss of the halogen atom is a multi-step process including at least two specific hydrogen transfers. Migration of a β-hydrogen atom to the carbonyl oxygen within the ethoxycarbouyl group produces a primary radical site in a distonic intermediate which, by subsequent abstraction of a hydrogen atom from C(3), triggers the ejection of X from C(2) with concomitant double bond formation. Whereas in the other isomer an [M - X]⁺ ion is absent or negligible, a characteristic double loss of C₂H₄ and CO₂ is observed.     

Phosphorus and Halogen Co‐Doped Graphene Materials and their Electrochemistry

Doping of graphene materials with heteroatoms is important as it can change their electronic and electrochemical properties. Here, graphene is co‐doped with n‐type dopants such as phosphorus and halogen (Cl, Br, I). Phosphorus and halogen are introduced through the treatment of graphene oxide with PX₃ gas (PCl₃, PBr₃, and PI₃). Graphene oxides are prepared through chlorate and permanganate routes. Detailed chemical and structural characterization demonstrates that the graphene sheets are covered homogeneously by phosphorus and halogen atoms. It is found that the amount of phosphorus and halogen introduced depends on the graphene oxide preparation method. The electrocatalytic effect of the resulting co‐doped materials is demonstrated for industrially relevant electrochemical reactions such as the hydrogen evolution and oxygen reduction reactions.     

DFT/TD-DFT study on halogen doping and solvent contributions to the structural and optoelectronic properties of poly[3,6-carbazole] and poly[indolo(3,2-b)-carbazole]

The polycarbazoles have been proved to be a good organic semiconductor. These are investigated by quantum chemical studies using B3LYP density functional theory (DFT), and the studies have given a detailed understanding on the impact of carbazole units and an introduction to the electron donating on the optoelectronic properties. The electron withdrawing groups of halogen atoms (chlorine, bromine and iodine) have been substituted into the side chain of the poly[3,6-carbazoles] (PCs) and poly[indolo(3,2-b)-carbazoles] (PICs) and analysed. The band was assigned in the gas phase at 354.8 and 365.1 nm for PCs and PICs which are in good agreement with experimental values of 350 and 390 nm. The calculated results show that the selected three halogen derivatives exhibit a strong blue shift in the toluene solvent medium, with high electronic transition. It is found that PCs, PICs and their derivatives have a narrow band derived in the conduction band, and it is composed of 3p, 4p and 5p states; thus, the energy gap of PCs and PICs increased between the highest occupied molecular orbital and lowest unoccupied molecular orbital energy level by the addition of electron acceptor group atoms. The doped PC and PIC electronegativities are well plotted by an electrostatic potential map, and the plot reveals that chlorine-doped PCs and PICs have less electronegativity and bromine-doped polymer has high electronegativity than that of the chlorine-doped polymers. The results obtained from these studies will expose the affairs between the molecular geometry and electronic and optical properties of the investigated polymers.     

Mono Halogen Substituted Calix[4]pyrroles: Fine-tuning the Anion Binding Properties of Calix[4]pyrrole

Abstract

Single halogen atom (i. e. I, Br, Cl and F) substituted calix[4]pyrroles, compounds 2, 3, 4 and 5, were synthesized. Studies of these systems reveal that replacement of a single β-pyrrolic hydrogen atom can increase the anion binding ability of calix[4]pyrroles for a variety of anions (e. g. Cl^?, Br^?, H₂PO₄ ^? and HSO^? ₄) relative to normal non-halogen substituted calix[4]pyrrole 1. In the case of chloride anion, the expected relative affinity sequence of 5 > 4 > 3 > 2 was observed. This was not found to be true for Br^?, H²PO^? ₄, and HSO^? ₄. Here, the chlorine substituted calix[4]pyrrole 4 was found to display a slightly higher affinity in the case of each anion than the fluorine-bearing derivative 5. This was rationalized in terms of intermolecular NH … F hydrogen bonding interactions being present in CD₂Cl₂ solutions of 5. Support for this latter conclusion came from concentration and temperature-dependent NMR spectroscopic studies.

A matched set of mono halogen substituted calix[4]pyrroles was used to study in detail, the extent to which halogen substituents may be used to fine-tune the anion binding properties of calix[4]pyrroles.     

Theoretical study on the bromomethane-water 1:2 complexes

Bromomethane-water 1:2 complexes have been theoretically studied to reveal the role of hydrogen bond and halogen bond in the formation of different aggregations. Four stable structures exist on the potential energy surface of the CH3Br(H2O)2 complex. The bromine atom acts mainly as proton acceptor in the four studied structures. It is also capable of participating in the formation of the halogen bond. The properties and characteristics of the hydrogen bond and the halogen bond are investigated employing several different quantum chemical analysis methods. Cooperative effects for the pure hydrogen bonds or the mixed hydrogen bonds with halogen bonds and the possibility of describing cooperative effects in terms of the topological analysis of the electronic density or the charge-transfer stabilization energy are discussed in detail. An atoms-in-molecules study of the hydrogen bond or the halogen bond in the bromomethane-water 1:2 complexes suggests that the electronic density topology of the hydrogen bond or the halogen bond is insensitive to the cooperative effect. The charge-transfer stabilization energy is proportional to the cooperative effect, which indicates the donor-acceptor electron density transfer to be mainly responsible for the trimer nonadditive effect.     

超分子体系中次层相互作用对59Co NMR谱的影响

用＾５０Ｃｏ固体静态ＮＭＲ对〔Ｃｏ（ＣＮ６〕＾３－离子与质子化的大环聚胺阳离子形成的超分子络合物的次层相互作用进行研究,结果表明,氢键的形成对该超分子结构的稳定性起了重要的作用。与仅有静电作用存在的Ｋ３〔ＣｏＣＮ）６〕分子相比,＾５９Ｃｏ的三个化学位移张量的主值差值在超分子体系中明显增大。氢键作用的结果使〔Ｃｏ（ＣＮ６〕３－的对称性发生了改变,导致＾１Ｔ１ｇ三重简并态发生分裂。分裂的大小反映了相互     

Participation of halogen atoms in hydrogen transfer between remote positions in gas-phase ionized isomeric haloresorcinols

Mono, di- and trihaloresorcinols substituted by a halogen atom at position 2 exhibit a highly specific elimination of H₂O on electron impact ionization and under conditions of collisionally induced dissociation (CID). The high isomer specificity suggests the intermediacy of a hydrogen transfer from one of the hydroxy groups to the adjacent halogen atom. A subsequent hydrogen migration to the other hydroxy group readily explains the facile elimination of H₂O from the M^+· ions of these particular isomers. An analogous three-step hydrogen transfer has not been observed in 2,3-dihalo-l,4-hydroquinones. 4-Bromo- and 4-icdoresorcinol undergo elimination of the halogen atom followed by a very fast loss of CO under CID conditions, affording [M ? Hal]⁺ ions of low abundance and highly abundant[M ? Hal ? CO]⁺ ions. The elimination of CO is suppressed in the isomeric 5-haloresorcinols, resulting in very highly abundant [M ? Hal]⁺ ions. This behavior suggests that a ‘hidden hydrogen transfer’ accompanies the elimination of the halogen atom from the molecular ions of 4-haloresorcinols.     

Noncovalent interactions under extreme conditions: high-pressure and low-temperature diffraction studies of the isostructural metal-organic networks (4-chloropyridinium)2[CoX4] (X = Cl, Br)

The crystal structures of the two isostructural metal-organic salts, (4-chloropyridinium) 2[CoX 4], X = Cl ( 1), Br ( 2), have each been determined at nine temperatures from 30 to 300 K and at nine pressures from atmospheric pressure to 4.2 GPa. A 5% reduction in unit cell volume is observed upon temperature reduction, whereas an 18-19% reduction is observed upon increasing the pressure over the ranges studied. The structures adopt a tape arrangement propagated by bifurcated N-H...X 2Co hydrogen bonds and by Co-X...Cl-C halogen bonds. Intertape interactions include type I Co-X...Cl-C and C-Cl...Cl-C halogen-halogen interactions as well as offset pi-stacking between the aromatic rings of the cations. Although little anisotropy in compression is seen upon temperature reduction, marked anisotropy in compression is observed upon pressure increase. Compression between tapes far exceeds compression along the tape, consistent with the strong attractive nature of the intratape N-H...X 2Co and Co-X...Cl-C interactions and the weaker dispersion dominated Co-X...Cl-C and C-Cl...Cl-C halogen-halogen interactions and pi-stacking interactions. Increased distortion of the [CoX 4] (2-) anions from idealized tetrahedral geometry arises upon pressure increase, consistent with local changes in the electric field that result from compression of the pairs of pi-stacked cations. The study of the isostructural pair of compounds permits a rare opportunity for quantitative evaluation of the "internal" or "chemical" pressure exerted by changing the [CoBr 4] (2-) anion for the smaller [CoCl 4] (2-) anion. Thus, crystal structures of 1 and 2 with equivalent unit cell volumes require an additional pressure of ca. 1 GPa exerted upon the structure containing the larger [CoBr 4] (2-) anion ( 2). This internal pressure increases to ca. 1.9 GPa at the highest pressures used in this study. Most significant is that examination of the isovolumetric pairs of structures shows that the structures containing the [CoCl 4] (2-) anion are contracted along the <101> vector, the direction of tape propagation, by ca. 1.2% and correspondingly expanded in other directions, relative to those containing the [CoBr 4] (2-) anion. Since the effect of difference in anion size has been removed by application of pressure, this anisotropy in dimensions clearly indicates that the N-H...X 2Co hydrogen bonds and Co-X...Cl-C halogen bonds are more strongly attractive for X = Cl rather than X = Br. Use of internal pressure thereby provides unique insight into the relative strength of intermolecular interactions.     

A Chiral Halogen‐Bonding [3]Rotaxane for the Recognition and Sensing of Biologically Relevant Dicarboxylate Anions

The unprecedented application of a chiral halogen‐bonding [3]rotaxane host system for the discrimination of stereo‐ and E/Z geometric isomers of a dicarboxylate anion guest is described. Synthesised by a chloride anion templation strategy, the [3]rotaxane host recognises dicarboxylates through the formation of 1:1 stoichiometric sandwich complexes. This process was analysed by molecular dynamics simulations, which revealed the critical synergy of halogen and hydrogen bonding interactions in anion discrimination. In addition, the centrally located chiral (S)‐BINOL motif of the [3]rotaxane axle component facilitates the complexed dicarboxylate species to be sensed via a fluorescence response.     

The structure, properties, and nature of HArF-HOX (X = F, Cl, Br) complex: an ab initio study and an unusual short hydrogen bond

The structure and properties (geometric, energetic, electronic, spectroscopic, and thermodynamic properties) of HArF‐HOX (X = F, Cl, Br) complex have been investigated at the MP2/aug‐cc‐pVTZ level. Three types of complexes are formed through a hydrogen bond or a halogen bond. The HArF‐HOX complex is the most stable, followed by the FArH‐OHX complex, and the HArF‐XOH complex is the most unstable. The binding distance in FArH‐OHX complex is very short (1.1–1.7 Å) and is smaller than that in HArF‐HOX complex. However, the interaction strength in the former is weaker than that in the latter. Thus, an unusual short hydrogen bond is present in FArH‐OHX complex. The associated H‐Ar bond exhibits a red shift, whereas the distant one gives a blue shift. A similar result is also found for the O? H and O? X bonds. The isotropic chemical shift is negative for the associated hydrogen atom but is positive for the associated halogen atom. However, a reverse result is found for the anisotropic chemical shift. The analyses of natural bond orbital and atoms in molecules have been performed for these complexes to understand the nature and properties of hydrogen and halogen bonds. © 2011 Wiley Periodicals, Inc. J Comput Chem, 2011     

CH3SH与HOCl分子间氢键和卤键的结构与性质

在DFT-B3LYP及MP2/6-311＋＋G**水平上分别求得CH3SH…HOCl氢键复合物和CH3SH…ClOH卤键复合物势能面上的稳定构型. 频率分析表明, 与单体HOCl相比, 在两种复合物中, Cl(9)—O(7)和H(8)—O(7)键伸缩振动频率发生显著的红移. 经MP2/6-311＋＋G**水平计算的含基组重叠误差(BSSE)校正的气相中相互作用能分别为－19.23和－6.85 kJ&#8226;mol－1. 自然键轨道理论(NBO)分析表明, 在CH3SH…ClOH卤键复合物中, 引起Cl(9)—O(7)键变长的因素包括2种电荷转移: (i)孤对电子LP[S(1)]1→σ*[Cl(9)—O(7)]; (ii)孤对电子LP[S(1)]2→σ*[Cl(9)—O(7)], 其中孤对电子LP[S(1)]2→σ*[Cl(9)—O(7)]转移占主要作用, 总的结果是使σ*[Cl(10)—O(11)]的自然布居数增加, 同时O(7)和Cl(9)原子s成分均增加的杂化重优具有与电荷转移作用相同的“拉长效应”; 在CH3SH…HOCl氢键复合物中也存在类似的电荷转移, 但是O(7)原子的再杂化效应不同于前者. 自然键共振理论(NRT)进行键序分析表明, 在氢键复合物和卤键复合物中, H(8)—O(7)和Cl(9)—O(7)键的键序都减小. 通过分子中原子理论(AIM)分析了复合物中氢键和卤键的电子密度拓扑性质.     

Stability issues of covalently and noncovalently bonded peptide subunits

The present study focuses on important questions associated with modeling of peptide and protein stability. Computing at different levels of theory (RHF, B3LYP) for a representative ensemble of conformers of di- and tripeptides of alanine, we found that the Gibbs Free Energy values correlate significantly with the total electronic energy of the molecules (0.922 < or = R2). For noncovalently attached but interacting peptide subunits, such as [For-NH2]2 or [For-L-Ala-NH2]2, we have found, as expected, that the basis set superimposition error (BSSE) is large in magnitude for small basis set but significantly smaller when larger basis sets [e.g., B3LYP/6-311++G(d,p)] are used. Stability of the two hydrogen bonds of antiparallel beta-pleated sheets were quantitatively determined as a function of the molecular structure, S10 and S14, computed as 4.0 +/- 0.5 and 8.1 +/- 1.1 kcal/mol, respectively. Finally, a suitable thermoneutral isodesmic reaction was introduced to scale both covalently and noncovalently attached peptide units onto a common stability scale. We found that a suitable isodesmic reaction can result in the total electronic energy as well as the Gibbs free energy of a molecule, from its "noninteracting" fragments, as accurate as a few tenths of a kcal per mol. The latter observation seems to hold for peptides regardless of their length (1 < or = n < or = 8) or the level of theory applied.     

Some measures for making halogen bonds stronger than hydrogen bonds in H2CS-HOX (X = F, Cl, and Br) complexes

The properties and applications of halogen bonds are dependent greatly on their strength. In this paper, we suggested some measures for enhancing the strength of the halogen bond relative to the hydrogen bond in the H(2)CS-HOX (X = F, Cl, and Br) system by means of quantum chemical calculations. It has been shown that with comparison to H(2)CO, the S electron donor in H(2)CS results in a smaller difference in strength for the Cl halogen bond and the corresponding hydrogen bond, and the Br halogen bond is even stronger than the hydrogen bond. The Li atom in LiHCS and methyl group in MeHCS cause an increase in the strength of halogen bonding and hydrogen bonding, but the former makes the halogen bond stronger and the latter makes the hydrogen bond stronger. In solvents, the halogen bond in the Br system is strong enough to compete with the hydrogen bond. The interaction nature and properties in these complexes have been analyzed with the natural bond orbital theory.     

Experimental and theoretical studies on vibrational structure of metal complexes with m-halogenobenzoic acids

The effects of alkaline metals and halogen substituent on the vibrational structure of m-halogenobenzoates have been investigated by Infrared (IR), Raman, and quantum chemical methods. A complete assignments of vibrational spectra are based on the previous literature data and present theoretical approach. A good correspondence between experimental and calculated (density functional theory) vibrational spectra has been observed. The changes in vibrational structure caused by halogen substituent indicate perturbation of the electronic charge distribution in the aromatic ring. The effect of alkaline metal is much weaker and hidden by overwhelming effect of halogen. A linear relationships between vibrational frequencies of selected bands and ionic potential as well as electronegativity of halogen substituent have been established. © 1997 John Wiley & Sons, Inc. Int J Quant Chem 62 : 385–392, 1997     

[Mn(H_2O)_4(NCS)_2]·(18-C-6)配合物晶体的电子结构与成键特性理论研究

本文取配合物晶体[Mn(H_2O)_4(NCS)_2]·(18-C-6)的一个分子片断进行CNDO/2半经验分子轨道理论计算,给出Mulliken键级、电荷分布和电子态密度等,探讨了其成键特性。结果表明,过渡金属配合单元[Mn(H_2O)_4(NCS)_2]与18-C-6冠醚环之间的主要结合方式是定域化程度相当高的氢键,与来自实验测量的推测相一致。     

A solid-state 17O NMR study of L -phenylalanine and L -valine hydrochlorides

We have presented an experimental investigation of the oxygen-17 chemical shielding (CS) and electric-field-gradient (EFG) tensors for alpha-COOH groups in polycrystalline amino acid hydrochlorides. The 17O CS and EFG tensors including the relative orientations between the two NMR tensors are determined in [17O]-L-phenylalanine hydrochloride and [17O]-L-valine hydrochloride by the analysis of the 17O magic-angle-spinning (MAS) and stationary NMR spectra obtained at 9.4, 11.7, 16.4, and 21.8 T. The quadrupole coupling constants (CQ) and the span of the CS tensors are found to be 8.41-8.55 MHz and 7.35-7.41MHz, and 548-570 ppm and 225-231 ppm, for carbonyl and hydroxyl oxygen atoms, respectively. Extensive quantum chemical calculations using density functional theory (DFT) have been also carried out for a hydrogen-bonding model. It is demonstrated that the behavior of the dependence of hydrogen-bond distances on 17O NMR tensors for the halogen ions is different from those for the water molecule.