Stereoselective effects in the solid-phase hydrogenation of unsaturatedl-hydroxyproline derivatives

The solid-phase catalytic hydrogenation of (R-4tert-butoxy-Δ¹-pyrroline-2-carboxylic) acid under the action of hydrogen spillover was studied. The reaction proceeds stereoselectively with the predominant formation of thel-amino acid. The configuration of the asymmetric center formed is determined by that of the asymmetric C(4) atom. The major portion of the isotope label is incorporated into the allylic C(3) and C(5) positions, and the β-H atoms are more mobile. Using quantum-chemical calculations, the geometric structure of thel-hydroxyproline molecule was calculated, and the spin-spin coupling constants for this tritium-labeled amino acid were determined. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 10, pp. 1820–1823, October, 1997.     

Analysis of multicomponent mixture and simultaneous enantioresolution of proteinogenic and non-proteinogenic amino acids by reversed-phase high-performance liquid chromatography using chiral variants of Sanger’s reagent

Four chiral derivatizing reagents (CDR 1–4), namely, FDNP-l-Ala, FDNP-l-Val, FDNP-l-Phe, and FDNP-l-Leu, were synthesized using microwave (MW) irradiation by substituting one of the fluorine atoms in difluoro dinitro benzene (DFDNB) with l-Ala, l-Val, l-Phe, and l-Leu (CDR 1–4). The other set of CDRs, namely, FDNP-l-Phe-NH₂, FDNP-l-Val-NH₂, and FDNP-l-Leu-NH₂, was also prepared. These reagents were used for synthesis of diastereomers of 18 proteinogenic and 08 non-proteinogenic amino acids, which were resolved by reversed-phase high-performance liquid chromatography using C18 column and gradient eluting mixture of aq.TFA and acetonitrile with UV detection at 340 nm. The reagents were used for resolution of a complex mixture of 18 racemic proteinogenic amino acids in a single chromatographic run of 65 min and to determine concentration of the d-amino acid in a solution of dl-amino acid. The resolution (R _S) and selectivity (α) obtained for the two sets of diastereomers were compared among themselves and among the two groups. The method was validated for accuracy, precision, limit of detection (LOD), and limit of quantification. LOD is 0.001% impurity of d-enantiomer.     

Study of solid-state catalytic isotope exchange of hydrogen inl-hydroxyproline under the action of spillover tritium

Reaction of high-temperature solid-state catalytic isotope exchange (HSCIE) of hydrogen in L-hydroxyproline was studied byab initio quantum-chemical calculations. A one-center synchronous mechanism of isotope exchange between the amino acid and the H₃O⁺ model acidic center was considered. The structures of transition states of the reaction and the activation energies were determined. Relative reactivity of the C−H bonds in the hydroxyproline molecule under conditions of HSCIE was studied. The results obtained are in agreement with experimental data on the stereoselectivity and regioselectivity of the HSCIE reaction,viz., the lower the calculated activation energy of isotope exchange, the larger the portion of hydrogen substituted by tritium in a given position of the amino acid molecule. The enhancement of the reactivity under conditions of solid-state isotope exchange can be associated with additional interaction between the exchanging H atoms and the electron-donor O and N atoms of the amino acid molecule in transition state. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 6, pp. 1056–1060, June, 1999.     

Purification and characterization of an extracellular α-l-arabinofuranosidase from Fusarium oxysporum

An α-l-arabinofuranosidase from Fusarium oxysporum F3 was purified to homogeneity by a two-step ion exchange intercalated by a gel filtration chromatography. The enzyme had a molecular mass of 66 kDa and was optimally active at pH 6.0 and 60°C. It hydrolyzed aryl α-l-arabinofuranosides and cleaved arabinosyl side chains from arabinoxylan and arabinan. There was a marked synergistic effect between the α-l-arabinofuranosidase and an endo-(1 →4)-β-d-xylanase produced by F. oxysporum in the extensive hydrolysis of arabinoxylan.     

Coordination complexes of l-azetidine-2-carboxylic acid with platinum(II) and palladium(II)

Summary The complexes K[Pt(l-aze)Cl₂, [Pt(l-aze)₂] and [Pd(l-aze)₂] (l-aze = l-azetidine-2-carboxylate) were prepared. X-ray structures show that [Pt(l-aze)₂] and [Pd(l-aze)₂] are isomorphous, having a planar tetragonal geometry with a trans configuration around the Pt and Pd atoms. Slight puckerings of the MN(1)N(11)O(11) chelate ring (M = Pt or Pd) and the azetidine ring were observed. The circular dichroism (c.d.) spectra of the complexes in aqueous solution agree with the structures found in the solid state as far as the hexadecant rule is concerned, giving, for the trans configuration of [M(l-ia)₂] (where ia = imino acid), the profile of the c.d. signs for the three predominant d-d transitions as: +,-,-. I.r., conductivity and n.m.r. measurements are also reported and are in accord with the proposed structures.     

Intercalation of basic amino acids into layered zirconium proline-<Emphasis Type="Italic">N</Emphasis>-methylphosphonate phosphate

Intercalation of basic amino acids into layered zirconium proline-N-methylphosphonate phosphate (α-ZPMP) was investigated at room temperature. Three kinds of host-guest compounds were prepared and characterised by elemental analysis, inductively coupled plasma analysis (ICP), Fourier transform infrared spectrum (FT-IR), Raman spectrum, X-ray powder diffraction (XRD) and thermoanalysis. The interaction of amino acid guests with P-OH of α-ZPMP host was documented by FT-IR and Raman spectra. In addition, the XRD patterns indicated that l-arginine or l-lysine were intercalated into the interlayer galleries of α-ZPMP host; the interlayer distances of the Larginine and l-lysine intercalation compounds were expanded from 1.520 nm to 2.218 nm and 2.207 nm, respectively. l-arginine and l-lysine would be arranged as a mono-molecule layer in different orientations. The interlayer distance of l-histidine (d = 1.522 nm) was similar to that of α-ZPMP host (d = 1.520 nm), l-histidine might be adsorbed on the outer surface of the α-ZPMP host. Thermoanalysis showed that the intercalated l-arginine and l-lysine were removed at 110–305°C or 150–250°C, respectively, the adsorbed l-histidine was released at a temperature of up to 320°C.     

Estimation of binding constants between ristocetin and teicoplanin and peptides using on-column ligand derivatization coupled to affinity capillary electrophoresis

This work utilizes on-column ligand synthesis and affinity capillary electrophoresis (ACE) to determine binding constants (K_b) of 9-flourenylmethyloxy carbonyl (Fmoc)-amino acid derivatives to the glycopeptide antibiotics ristocetin (Rist) and teicoplanin (Teic). In this technique, two separate plugs of sample are injected on to the capillary column and electrophoresed. The initial sample plug contains a d-Ala-d-Ala terminus peptide and either one or two non-interacting standard(s). The second plug contains a Fmoc-amino acid-N-hydroxysuccinimide (NHS) ester. The electrophoresis is then carried out with an increasing concentration of Rist or Teic in the running buffer. Upon electrophoresis the initial d-Ala-d-Ala peptide reacts with the Fmoc-amino acid yielding a new Fmoc-amino acid-d-Ala-d-Ala peptide derivative. Continued electrophoresis results in the binding of Rist or Teic to the Fmoc-amino acid-d-Ala-d-Ala peptide derivatives. Analysis of the change in the relative migration time ratio (RMTR) or electrophoretic mobility () of the Fmoc-amino acid-d-Ala-d-Ala peptide derivatives relative to the non-interacting standards, as a function of the concentration of Rist and Teic, yields a value for K_b. These findings demonstrate the advantage of coupling on-column ligand synthesis to ACE for estimating binding parameters between antibiotics and ligands.Abbreviations Rist Ristocetin - Teic Teicoplanin - ACE Affinity capillary electrophoresis - RMTR Relative migration time ratio     

Electrochemical study of gallium(III) with <Emphasis Type="SmallCaps">l</Emphasis>-glutamine at the dropping mercury electrode

Abstract  

Gallium complexes of l-glutamine have been studied polarographically in aqueous media. The reduction was found to be irreversible and diffusion controlled in the presence of 0.1 M KNO₃ and 0.002% Triton-x-100. The values of kinetic parameters, transfer coefficient (α _n), and formal rate constant ( k_{\textf,\texth}⁰ k_{{{\text{f}},{\text{h}}}}^{0} ) of the electrode reactions were calculated by Koutecky's method. The stability constants and composition of the gallium(III)-l-glutamine complexes were evaluated with the help of the Deford-Hume method. The values of stability constants of 1:1, 1:2, and 1:3 gallium(III)-l-glutamine complexes are 1.35, 6.5, and 1,350 at 30 °C, respectively. The values of thermodynamic parameters, the free energy of activation, the enthalpy of activation, and the entropy of activation have been determined at 30 °C. The formation of the metal complexes has been found to be non-spontaneous, endothermic in nature, and entropically favorable at higher temperature.     

A kinetic and mechanistic study of oxidation of <Emphasis Type="SmallCaps">l</Emphasis>-lysine by the analytical reagent diperiodatoargentate(III) in aqueous alkaline medium

The kinetics of oxidation of l-lysine by diperiodatoargentate(III) (DPA) in aqueous alkaline medium at a constant ionic strength of 0.50 mol dm⁻³ was studied spectrophotometrically. The oxidation products are aldehyde, 5-aminopentanal and Ag(I). The main products were identified by spot test, IR and GC-MS. The stoichiometry is [l-lysine]:[DPA] = 1:1. The reaction is first order with respect to diperiodatoargentate(III) concentrations, whereas the order with respect to l-lysine and alkali concentrations changes from first order to zero order as the l-lysine and alkali concentrations are increased. The effects of added products, periodate, ionic strength, and dielectric constant of the reaction medium were investigated. Based on the experimental results, a mechanism involving complex formation between DPA species and l-lysine is proposed. The reaction constants involved in the mechanism were evaluated. The activation parameters with respect to the slow step of the mechanism were determined and discussed.     

Determination of the absolute configuration of selenomethionine from antarctic krill by RP-HPLC/ICP-MS using chiral derivatization agents

A fast and sensitive method was developed for the determination of the absolute configuration of selenomethionine. The enantiomers of selenomethionine were converted into diastereomeric isoindole derivatives by reaction with o-phthaldialdehyde and N-isobutyryl-l-cysteine. This easy-to-handle reaction proceeds quantitatively in a few minutes at room temperature. Separation and detection of the diastereomers was achieved by reversed-phase high-performance liquid chromatography–inductively coupled plasma-mass spectrometry (RP-HPLC/ICP-MS) using a conventional C18 reversed-phase column. Detection limits of about 4 µg L^–1 were obtained. The method was applied to the determination of the configuration of selenomethionine extracted from antarctic krill, which turned out to possess the l-configuration.     

Palladium(II) Catalysed Oxidation of l-proline by Heptavalent Manganese in Aqueous Alkaline Medium: A Free Radical Intervention and Decarboxylation

The kinetics of palladium(II) catalysed oxidation of l-proline by permanganate in alkaline medium was studied spectrophotometrically. The reaction between permanganate and l-proline in alkaline medium exhibits 2:1 stoichiometry (KMnO₄: l-proline). The reaction is first order with respect to [MnO₄⁻] and [Pd(II)], an apparent less than unit order in [alkali] and zero order in [l-proline] under the experimental conditions. Reaction rate increases with increase in ionic strength and decrease in solvent polarity of the medium. Addition of reaction products did not affect the rate significantly. A mechanism involving the intervention of a free radical generated by l-proline has been proposed. The reaction constants involved in the mechanism were evaluated. The activation parameters with respect to the slow step of the Scheme were evaluated and are discussed.     

MECHANISM OF PHOTOOXYGENATION OF THE CD (II) COMPLEX OF PYROPHEOPHORBIDE A METHYL ESTER

Photooxygenation of (pyropheophorbidato a methyl ester)cadmium (II) was studied using ^18,18O₂ labeling of the molecular oxygen required for cleavage of the macrocycle. After reductive demetallation of the primary oxidation product (4,5-dioxo-4,5-secopyropheophorbidato a methyl ester)cadmium (II), the isotope content of formylbilinone 4a was analyzed by repeated-scan fast atom bombardment mass spectrometry. Comparison of the spectroscopic data of the labeled pigment 4a with the statistical probabilities of¹⁸ O isotope incorporation calculated for four possible reaction mechanisms clearly proves that photooxidative ring cleavage occurred by the one-molecule mechanism, i.e. the terminal oxygen atoms of 4a were derived from one oxygen molecule. Furthermore, a study of the exchange of the¹⁸ O-labeled atoms revealed that no exchange occurs within the pH 4.5–9.5 range. In stronger alkaline or acidic solutions, only the oxygen atom of the formyl group is exchanged. Hydrolysis of the methyl ester group of 4a was achieved, without loss of the¹⁸ O label on the formyl group, at pH 7.2 in the presence of pig liver esterase.     

Kinetic study of ruthenium(III)-catalyzed oxidation of <Emphasis Type="SmallCaps">l</Emphasis>-alanine by diperiodatoargentate(III) in aqueous alkaline medium

The kinetics of Ru(III)-catalyzed oxidation of l-alanine (Ala) by diperiodatoargentate(III) (DPA) in alkaline medium at 25 °C and a constant ionic strength of 0.90 mol dm⁻³ was studied spectrophotometrically. The products are acetaldehyde, Ag(I), ammonia and bicarbonate. The [Ala] to [DPA] stoichiometry is 1:1. The reaction is first order in both [Ru(III)] and [DPA] and has less than unit order in both [Ala] and [alkali]. Addition of periodate has a retarding effect on the reaction. The effects of added products, ionic strength and dielectric constant of the reaction medium have been investigated. The reaction proceeds via a Ru(III)–Ala complex, which further reacts with one molecule of monoperiodatoargentate(III) in the rate-determining step. The reaction constants were calculated at different temperatures and the activation parameters have been evaluated.     

QM/MM study on catalytic mechanism of aspartate racemase from <Emphasis Type="Italic">Pyrococcus horikoshii</Emphasis> OT3

The enzyme aspartate racemase from Pyrococcus horikoshii OT3 catalyzes the interconversion between l- and d-Asp. In this work, we employed the hybrid QM/MM approach with the self-consistent charge-density functional tight binding (SCC-DFTB) model to study the catalytic mechanism for the conversion of l-Asp into d-Asp. The molecular dynamics simulation showed that the substrate l-Asp forms an extensive network of interactions with the active-site residues of the aspartate racemase through its side chain carboxylate, ammonium group, and α-carboxylate. The potential of mean force calculations confirmed that the racemization reaction involves two proton transfers (from the α-carbon to Cys194 and from Cys82 to the α-carbon), which occurs in a concerted way, although highly asynchronous. The calculated free energy of activation is 17.5 kcal/mol, which is consistent with the reaction rate measured from experiment. An electrostatic interaction analysis was performed to estimate the key role played by individual residues in stabilizing the transition state. The docking study on the binding of l-Asp and d-Asp to aspartate racemase indicates that this enzyme employs a “two-base” mechanism not a “one-base” mechanism.     

Reversal of Enantiomeric Retention Order by Using a Single N-Derivatized Dipeptide as Chiral Mobile Phase Additive and Porous Graphitised Carbon as Stationary Phase

In this work the three dipeptides, Z-l-alanyl-l-glutaric acid (Z-l-ala-l-glu), Z-l-phenylanyl-l-glutaric acid (Z-l-phe-l-glu) and Z-glycyl-l-glutaric acid (Z-gly-l-glu) were tested as chiral counter ions for enantiomeric resolution of amino alcohols. The influence of solute and counter ion structure upon retention and enantioselectivity was evaluated. The chiral counter ions were dissolved in a mixture of polar solvents, i.e., ethyl acetate, methanol and acetonitrile and the achiral solid phase used was porous graphitic carbon, marketed as Hypercarb. The enantioselectivities observed for the tested solutes were highly influenced by the used chiral counter ion structure. For example no enantioselectivity was observed for (R,S)-alprenolol using Z-l-ala-l-glu while a separation factor (α) of 1.59 was obtained using Z-l-phe-l-glu as chiral counter ion. High selectivity factors (α > 2.7) were observed between enantiomers of tertiary amines using Z-l-phe-l-glu as counter ion. Interestingly, the structure of the counter ion, as well as the charge on Z-l-phe-l-glu and the mobile phase solvent composition, influenced the retention order of the enantiomers.     

Solvent Effects on the Protonation Constants of Some <Emphasis Type="Italic">α</Emphasis>-Amino Acid Esters in 1,4-Dioxane–Water Mixtures

The stoichiometric protonation constants of some α-amino acid esters (glycine methyl ester, glycine t-butyl ester, l-valine methyl ester, l-valine ethyl ester, l-valine t-butyl ester, l-serine methyl ester, l-serine ethyl ester, l-leucine methyl ester, l-leucine ethyl ester, l-leucine t-butyl ester, l-alanine methyl ester, l-alanine benzyl ester, l-phenylalanine methyl ester, l-phenylalanine ethyl ester, and l-phenylalanine t-butyl ester) in water and 20%, 40%, and 60% (v/v) 1,4-dioxane–water mixtures have been determined at an ionic strength of 0.10 mol⋅L⁻¹ NaCl and at 25.0±0.1 °C under a nitrogen atmosphere. A potentiometric method was used and the calculation of the protonation constants has been carried out using the BEST computer program. The results were discussed in terms of macroscopic properties of the mixed solvent. The stoichiometric protonation constants were influenced by changes in solvent composition and their variations were discussed in terms of preferential solvation. Also, knowledge the protonation constant of α-amino acid esters will be helpful when determining the microscopic equilibrium constants of their corresponding amino acids.     

Covalent sidewall functionalization of single-walled carbon nanotubes by amino acids

Single-walled carbon nanotubes (SWNTs) with amino acids covalently attached to their side walls, viz., “nanotube-aminoacids,” have been prepared starting from colloidal solutions of fluorinated SWNTs (F-SWNTs) and amino acids in o-dichlorobenzene and heating at 80–150 °C in the presence of pyridine. The syntheses were carried out with the F-SWNTs of approximately 2: 1 (C: F) stoichiometry and several natural α-aino acids with both pro-tected and unprotected carboxyl groups, such as glycine ethyl ester hydrochloride, L-serine ethyl ester hydrochloride, l-cysteine, and trans-4-hydroxy-l-proline. The nanotube-aminoacids have been characterized by Raman and FTIR spectroscopy, atomic force, scanning, and transmission electron microscopies, and thermal gravimetric analysis (TGA). Based on TGA data, the degree of sidewall functionalization in the synthesized SWNT derivatives was estimated to be in the range from one of 32 to one of 8 carbon atoms, depending on the amino acid nature and reaction conditions used. The amino acid-functionalized SWNTs, prepared in this work by simple and inexpensive one-step method, can be valuable precursors for peptide synthesis and targeted drug delivery, design and fabrication of nanocomposites and fibers, and other biomedical and engineering applications. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 5, pp. 1035–1043, May, 2008.     

Enantioselective visualization of <Emphasis Type="SmallCaps">D</Emphasis>-alanine in rat anterior pituitary gland: localization to ACTH-secreting cells

The cellular localization of D-alanine (D-Ala) in the rat pituitary gland, the tissue containing the highest amount of D-Ala, has been clarified for the first time by enantioselective visualization of D-Ala using our own established mouse monoclonal antibody against D-Ala. D-Ala immunopositive cells were present predominantly in the anterior lobe, while no intense staining was observed in the intermediate and posterior lobes. The anterior pituitary gland contains five types of cells secreting specific hormones (growth hormone, adrenocorticotropic hormone (ACTH), gonadotropic hormone, prolactin, and thyroid-stimulating hormone), and the double staining results indicated that D-Ala is localized to the ACTH-secreting cells. The localization of D-Ala is clearly different from that of D-aspartic acid (D-Asp), which is observed in the prolactin cells. Considered together with our previous findings that D-Ala is localized to the insulin-secreting beta-cells in the pancreas, and both ACTH and insulin are typical regulatory hormones of blood glucose, D-Ala is suggested to have some functional relationships to blood glucose level regulation in mammals.     

Detection of halogenated organic compounds using immobilized thermophilic dehalogenase

Environmental pollutants containing halogenated organic compounds can cause a plethora of health problems. Detection, quantification, and eventual remediation of halogenated pollutants in the environment are important to human well-being. Toward this end, we previously identified a haloacid dehalogenase, L-HAD_ST, from the thermophile Sulfolobus tokodaii. This thermophilic enzyme is extremely stable and catalyzes, stereospecifically, the dehalogenation of l-2-haloacids. In the current study, we covalently linked L-HAD_ST to an N-hydroxysuccinimidyl Sepharose resin to construct a highly specific sensor with long shelf life for the detection of l-2-haloacids. The enzyme-modified resin was packed into disposable columns. Samples containing l-2-haloacids were first incubated in the column, and were then collected to quantify the chloride produced through the breakdown of the substrate. The optimum pH of the immobilized enzyme is around 9.5, similar to that of the soluble protein. Its catalytic activity increased with temperature up to the highest temperature measured (50 °C). The resin could be fully regenerated after multiple reaction cycles and retained 70% of the initial activity after being stored at 4 °C for 6 months. The L-HAD_ST-modified resin could be used to breakdown and quantify l-2-haloacids spiked in the simulated environmental samples, indicating dehalogenases from extremophiles can potentially be employed in the detection and decontamination of l-2-haloacids.     

Liquid membrane transport of supramolecular complexes of some amines and amino acids with macrocyclic ligands

The transport of some amines in protonated form was studied (viz. methylamine, dimethylamine, diethylamine andn-propylamine) and -amino acids (l-leucine,l-methionine,l-isoleucine,l-phenylalanine,l-valine,l--alanine andl-cysteine). The following macrocyclic ligands were used as carriers throughout the experiments: 15-crown-5 (15C5), 18-crown-6 (18C6), benzo-18-crown-6 (B18C6), dibenzo-18-crown-6 (DB18C6), diazacrown ether [2.2] (1,7,10,16-tetraoxa-4,13-diazacyclooctadecane) and cryptand [2.2.2] (4,7,13,16,21,24-hexaoxa-1,10-diazabicyclo [8.8.8] hexacosane). The active transport, assisted by pH gradient, of amino acids and amines in protonated form as ion pairs in the presence of picrate anion was performed. The experiments suggested the influence of the ligand size, the donor atom type, and the substituents on the transport phenomena.