The micro-optical ring electrode. 3: Transient photocurrent studies of photophysical-electrochemical and photophysical-chemical-electrochemical systems

The micro-optical ring electrode (MORE) is a photoelectrochemical device based on a ring microelectrode that uses the insulating material interior to the ring electrode as a light guide. In this paper, we describe the preparation and characterization of very thin ring MOREs with (ring inner radius)/(ring outer radius) > 0.99. Theoretically, we derive asymptotic analytical expressions for the time dependence of the diffusion-limited transient light-on photocurrent generated by two general types of photoelectrochemical systems: (a) the PE (photophysical-electrochemical) system, wherein the photoexcited species itself is directly detected on the ring; (b) the PCE (photophysical-chemical-electrochemical) system, wherein the photoexcited species undergoes a homogeneous electron transfer reaction prior to electrochemical detection. Experimentally, we establish that it is possible to use such MOREs to study the wavelength dependence of photocurrents derived from photoelectrochemically active systems, such as the Ru(bipy)3 2+/Fe3+ PCE system, demonstrating the potential utility of the MORE as a selective electroanalytical probe. We also use our expressions for the time dependence of photocurrents at the MORE to derive values for the photoelectrochemical kinetic parameters of this system, including the rate coefficient for the back reaction of photogenerated Ru(bipy)3 3+ (0.115 s(-1)) and the quantum efficiency for the primary redox products, Ru(bipy)3 3+ and Fe2+, escaping cage recombination, phi(CE) = 0.099.     

The effect of phenyl substituents on the release rates of esterase-sensitive coumarin-based prodrugs

A coumarin-based prodrug system has been recently developed in our laboratory for the preparation of esterase-sensitive prodrugs of amines, peptides, and peptidomimetics. The drug release rates from this prodrug system were found to be dependent on the structural features of the drug moiety. In certain cases, the release can be undesirably slow for drugs that are secondary amines with relatively high pKa's. Aimed at finding ways to manipulate the release rates to suit the need of different drugs, we have examined the effect of the phenyl ring substitutions on the release kinetics of such prodrugs and found that appropriately positioned alkyl substituents on the phenyl ring could help to facilitate the release by as much as 16-fold. Therefore, introduction of alkyl substituents on the phenyl ring should allow us to manipulate the release rates and, therefore, time profiles for different drugs.     

Polar Organofluorine Substituents: Multivicinal Fluorines on Alkyl Chains and Alicyclic Rings

This Review outlines the progression, primarily of our own work, but with important contributions from other labs, on the synthesis and properties of multiple vicinally fluorinated alkyl chains and rings. Chain conformations of individual diastereoisomers with -CHF- at adjacent carbons are influenced by stereoelectronic factors associated with the polar C−F bond and the polarised geminal hydrogens. Generally, the chain will prefer a conformation which acts to minimise overall molecular polarity, and where the C−F bonds orient away from each other. However, when vicinal fluorine atoms are positioned on a ring then conformations are more constrained. The ring will adopt optimal conformations such as a chair in cyclohexane and then C−F bonds can be introduced with a stereochemistry that forces parallel (axial) orientations. In the case of cyclohexane, 1,3-diaxial arrangements of C−F bonds impart considerable polarity to the ring, resulting in an electronegative ‘fluorine face’ and an electropositive ‘hydrogen face’. For all-syn 1,2,3,4,5,6-hexafluorocyclohexane, this arrangement generates an unusually polar aliphatic ring system. Most recently the concept has been extended to the preparation of all-syn 1,2,3-trifluorocyclopropanes, a rigid ring system with fluorine atoms on one face and hydrogens on the other. Lipophilicity Log P values of such compounds indicate that they are significantly more polar than their parent alicyclic hydrocarbons and give some positive indication for a future role of such substituents in medicinal chemistry. Expanding to such a role will require access to improved synthesis methods to these motifs and consequently access to a broader a range of building blocks, however some exciting new methods have emerged recently and these are briefly reviewed.     

Quantum delocalization of benzene in the ring puckering coordinates

The effect of quantum mechanical delocalization of atomic nuclei on the conformation of the six‐membered ring structure in two hydrocarbons, cyclohexane and benzene, is investigated using ab initio path integral approach. A striking feature of benzene species is revealed using ring puckering coordinate representation, which demonstrates that the zero point motion of the heavy atom skeleton dominates over the out‐of‐plane thermal motions of the ring. Even more unexpected is the fact, that this is true not only at low temperature of 150 K, at which such behavior would not be surprising, but also at room temperature, where the nuclear quantum effects are usually of lesser importance, especially in the case of such heavy nuclei as carbon. In view of this finding the planar conformation of benzene, whose equilibrium (T = 0 K) geometry results from the well‐known properties of the electronic structure, can be elucidated also at nonzero temperature. According to our simulations, it appears as a consequence of quantum delocalization of the carbon nuclei rather than a trivial time average over the classical configurations of the puckered ring. This interesting behavior is contrasted with the clearly nonplanar structure of cyclohexane, whose ring puckering states can be unequivocally assigned even if the nuclear delocalization is taken into account. © 2014 Wiley Periodicals, Inc.     

Ring connectivity: measuring network connectivity in network covalent solids

In atomistic models of amorphous materials, ring statistics provide a measure of medium-range order. However, while ring statistics tell us the number of rings present in the model, they do not give us any information about the arrangement of rings, e.g., whether the rings are clustered and how big the cluster is. In this work we present a method to calculate the ring connectivity, or clustering, of rings. We first calculate the rings present in the model using the shortest path criteria of Franzblau and then find the rings that are connected together and group them into clusters. We apply our method to a set of models of disordered carbons, obtained using a reverse Monte Carlo procedure developed in a recent work. We found that in these carbon models the five-, six-, and seven-membered rings are connected together, forming clusters. After isolating the clusters, we found that they resemble defective graphene segments twisted in a complex way. The clusters give further insight about the arrangement of carbon atoms in microporous carbons at a larger length scale. Moreover, the method can be applied to any network covalent solid that contains rings and thus gives information about the ring connectivity present in such materials.     

Control of doctor‐blade coated poly (3,4‐ethylenedioxythiophene)/poly(styrenesulfonate) electrodes shape on prepatterned substrates via microflow control in a drying droplet

We demonstrated a simple patterning method for the deposition of polymer electrodes such as poly(3,4‐ethylenedioxythiophene)/poly(styrenesulfonate) (PEDOT/PSS). We made use of the difference in wettability between hydrophobic surfaces and hydrophilic surfaces to make the patterns. However, the patterns made with our patterning method created undesirable ring‐like stains, which were caused by the outward flow of the solute within the PEDOT/PSS solution drop. To achieve homogenous device performance, we proposed a simple process for removing this ring‐like stain by making the surface tension gradient with dual solvent system in the PEDOT/PSS solution drop. Because this surface tension gradient causes the inward flow of the solute within the PEDOT/PSS solution drop, the ring‐like stain is removed. Finally, we confirmed the potential of our patterning method for polymer electrodes such as the PEDOT/PSS by fabricating pentacene thin‐film transistors (TFTs) and measuring the electrical properties of the pentacene TFTs. © 2011 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 49: 1590–1596, 2011     

New Processes for Annulation

Making use of the high propensity of 2-cyano-2-cycloalkenones to undergo conjugate addition with various carbanions and the high reactivity of the ensuing α-cyano ketone system, a number of new annulation processes have been developed recently in our laboratories. As shown in Eq. 1 (n=1) with a specific example, one such process involves the addition of 3-butenylmagnesium bromide, followed by a palladium (II) acetate mediated oxidative cyclization, to facilitate methylenecyclopentane ring for…     

药效团检索设计新的HIV-1蛋白酶抑制剂

通过对自建的未开发化合物三维结构库进行药效团检索,得到了4个对HIV-1蛋白酶抑制活化的化合物,通过构象分析发现包含药效团的构象处于优势构象,而且4个结构都含有带两个邻位羟基的苯环和一个间位羰基的药效团以及公共子结构。通过计算发现它们的疏水参数都很小。在考虑满足包含药效团的结构特征和有适中的疏水参数两个因素的前提下,设计出了新的具有潜在抑制HIV-1蛋白酶活性的化合物。它们的结构都比检索得到的四个化合物更为简单,因此易于合成。     

Solvent Effect of Dimethyl Sulfoxide on the Chemical Shifts of Phenyl Vinyl Ketones

In our study on the 1D and 2D NMR spectra of synthetic chalcones in DMSO‐d₆, we found that, contrary to our expectation, the signals of α‐carbon correlated to the olefinic protons resonating at lower field whereas the signals of β‐carbon correlated to the olefinic protons resonating at higher field in the spectra of chalcones. To further investigate such solvent effect, four α,β‐unsaturated ketones were prepared and studied separately in CDCl₃ and DMSO‐d₆. The result indicated that the α,β‐unsaturated ketones that possess benzoyl moiety experienced solvent effect in DMSO‐d₆ to result in an anomalous chemical shift. The shift arose from the complexation of solute molecule with DMSO that fixed the steric conformation of solute molecule so that H_β was kept apart from its benzene ring whereas its H_α became more accessible by its benzene ring. Thus, these two olefinic protons would experience a different extent of anisotropic effect exerted by the neighboring benzene ring.     

Molecular complexity from aromatics. Cycloaddition of cyclohexa-2,4-dienones, sigmatropic 1,2-acyl shift and ring-closing metathesis: a new, efficient, and stereoselective synthesis of (±)-hirsutic acid C and medium ring carbocycles

A new, stereoselective formal synthesis of hirsutic acid and medium ring carbocyclic systems from salicyl alcohol is described. Cycloaddition between electron deficient partners such as cyclohexa-2,4-dienone and methylmethacrylate, triplet sensitized 1,2-acyl shift and ring-closing metathesis are the key features of our approach.     

Structures and Properties of Silicon Oxide Clusters by Theoretical Investigations

In this paper, we outline our computational work in the area of silicon oxide clusters. To reduce the computational cost, we designed an economic basis set for silicon oxide systems, and reliable structures were obtained by this approach. To reveal the formation mechanism of silicon nanowires, we investigated the structures and properties of silicon suboxide clusters in particular monoxide clusters that play an important role in the oxide-assisted growth. And to improve our understanding of the silicon dioxide clusters and to bridge the gap between gas phase and solid phase silica, we proposed several models based on the two-membered ring (2MR), three-membered ring (3MR), four-membered ring (4MR), the hybrid of the 2MR and 3MR, or the 3MR and 4MR.     

Total synthesis of the strychnos alkaloid (+)-minfiensine: tandem enantioselective intramolecular Heck-iminium ion cyclization

A 1,2,3,4-tetrahydro-9a,4a-(iminoethano)-9H-carbazole (4) is a central structural feature of the Strychnos alkaloid minfiensine (1) and akuammiline alkaloids such as vincorine (5) and echitamine (6). A cascade catalytic asymmetric Heck-iminium cyclization was developed that rapidly provides 3,4-dihydro-9a,4a-(iminoethano)-9H-carbazoles in high enantiomeric purity. Two sequences were developed for advancing 3,4-dihydro-9a,4a-(iminoethano)-9H-carbazole 27 to (+)-minfiensine. In our first-generation approach, a reductive Heck cyclization was employed to form the fifth ring of (+)-minfiensine. In a second more concise total synthesis, an intramolecular palladium-catalyzed ketone enolate vinyl iodide coupling was employed to construct the final ring of (+)-minfiensine. This second-generation total synthesis of enantiopure (+)-minfiensine was accomplished in 6.5% overall yield and 15 steps from 1,2-cyclohexanedione and anisidine 13. A distinctive feature of this sequence is the use of palladium-catalyzed reactions to form all carbon-carbon bonds in the transformation of these simple precursors to (+)-minfiensine.     

Antihydrophobic cosolvent effects for alkylation reactions in water solution, particularly oxygen versus carbon alkylations of phenoxide ions

Antihydrophobic cosolvents such as ethanol increase the solubility of hydrophobic molecules in water, and they also affect the rates of reactions involving hydrophobic surfaces. In simple reactions of hydrocarbons, such as the Diels-Alder dimerization of 1,3-cyclopentadiene, the rate and solubility data directly reflect the geometry of the transition state, in which some hydrophobic surface becomes hidden. In reactions involving polar groups, such as alkylations of phenoxide ions or S(N)1 ionizations of alkyl halides, cosolvents in water can have other effects as well. However, solvation of hydrophobic surfaces is still important. By the use of structure-reactivity relationships, and comparing the effects of ethanol and DMSO as solvents, it has been possible to sort out these effects. The conclusions are reinforced by an ab initio computer model for hydrophobic solvation. The result is a sensible transition state for phenoxide ion as a nucleophile, using its oxygen n electrons to avoid loss of conjugation. The geometry of alkylation of aniline is very different, involving packing (stacking) of the aniline ring onto the phenyl ring of a benzyl group in the benzylation reaction. The alkylation of phenoxide ions by benzylic chlorides can occur both at the phenoxide oxygen and on ortho and para positions of the ring. Carbon alkylation occurs in water, but not in nonpolar organic solvents, and it is observed only when the phenoxide has at least one methyl substituent ortho, meta, or para. The effects of phenol substituents and of antihydrophobic cosolvents on the rates of the competing alkylation processes indicate that in water the carbon alkylation involves a transition state with hydrophobic packing of the benzyl group onto the phenol ring. The results also support our conclusion that oxygen alkylation uses the n electrons of the phenoxide oxygen as the nucleophile and does not have hydrophobic overlap in the transition state. The mechanisms and explanations for competing oxygen and carbon alkylations differ from previous proposals by others.     

Thirty years of pyrimidine chemistry in the laboratory of organic chemistry at the Wageningen Agricultural University,The Netherlands (review)

In this review attention is paid to two topics, which were of great interest to us during 30 years of studies in pyrimidine chemistry in our laboratory: first, the development of our concepts of the AIYRORC processes, which occur in ring transformation reactions; second, the intra- and intermolecular inverse Diels-Alder reactions in which the pyrimidine ring acts as the electron poor diazadiene system. Their use in synthetic chemistry is illustrated and evidence is presented, based on experiments and molecular mechanics calculations, that in intermolecular Diels-Alder reactions the geometry of the side-chain plays a vital role.     

A survey of kinetic and mechanistic similarities in living polymerization systems

In the light of recent discoveries in the field of living polymerizations it seems inevitable to reconsider our views on these polymerization systems. This paper surveys the kinetic and mechanistic similarities in living polymerizations, and analyses and compares chain transfer dominated nonliving polymerizations and living systems to conclude on the nature of propagating species, shelflife and livingness. Some recently raised specific problems are also summarized and discussed. It has been found that most of the living polymerizations known to date, such as living anionic, cationic ring opening, group transfer, carbocationic, ring opening metathesis, Ziegler-Natta, free radical and immortal polymerizations, exhibit the characteristics of quasiliving polymerization, i.e., an equilibrium exists between propagating (active) and inactive (dormant) species. On the basis of this finding and a comparison between mechanistic and kinetic models of quasiliving and ideal living polymerizations, it is suggested that the former is the general phenomenon, and ideal living polymerization is a subclass of quasiliving polymerizations.     

Structural and electronic effects on the exchange interactions in dinuclear bis(phenoxo)-bridged copper(II) complexes

Computational methods based on density functional theory have been employed to analyze the magnetic properties of dinuclear bis(phenoxo)-bridged Cu^II complexes. While the largest part of complexes in that family show antiferromagnetic coupling, we focus our study on those cases with distorted geometries that present ferromagnetic behaviour. The calculations reproduce such a magnetic behaviour, and a structural analysis reveals the main role played by several structural parameters, such as the Cu–O–Cu bridging angle. The out-of-plane shift of the phenoxo ring and the hinge distortion of the Cu₂O₂ central framework that are also important for similar hydroxo and alkoxo complexes. In this case the conformation of the phenoxo groups and the rotation of the phenyl rings can also play an important role. The last part of this work is dedicated to analyze the influence of the substituents of the phenoxo ring on the magnetic properties, which is especially important for structures with large out-of-plane shifted phenoxo rings. The presence of π electron releasing groups favours a ferromagnetic coupling.     

Mechanism and Selectivity of the Oxidative Ring Contraction of Cyclic α‐Formyl Ketones

The oxidative contraction of α‐formal ketone to form continuous all carbon chiral centers promoted by H₂O₂ is widely used in natural product total synthesis. Typically, using this transformation, chiral cyclic ketones are obtained as the major products and ring‐opening products as the minor products. Herein, DFT calculations have been used to investigate the detailed reaction mechanism and chemoselectivity. In addition, with the widely accepted mechanism of H₂O₂‐promoted transformation, our systematic investigation with various explicit‐solvent‐model calculations for the first time shows that H₂O and H₂O₂ are comparable at catalyzing the rate‐determining step of this reaction, which emphasis the importance of solvent effect in such transformations. It is found that both the less ring‐constrain and a later transition state in an exothermic reaction account for the origin why the reaction favors ring‐contraction pathway rather than ring‐opening one. By a comprehensive analysis for the substituted groups, it has been disclosed that the steric effects of the substituted groups on R² and R³ contribute to the selectivity with larger steric hindrance favoring the chiral cyclic products. Moreover, the electronic effects on R¹ but not R³ affect the selectivity with electron‐donating groups leading to the cyclic products. Based on our calculations, some predictions for higher selectivity have been made.     

Scope of the formal [3+2] cycloaddition for the synthesis of five-membered ring of functionalized indanes

We report our research about the synthesis of functionalized indanes in the pentagonal ring by a formal [3+2] cycloaddition using benzhydrols and styrene derivatives with electron-withdrawing groups joined to C-β, such as carboxyl, carboxymethyl, carbonyl of ketones, and nitro groups. We also report the configurational assignment of the indanic structures synthesized using several experiments of NMR.     

π‐Electron currents in larger fully aromatic benzenoids

Recently, we have reported on calculation of π‐electron ring currents in several smaller fully benzenoid hydrocarbons having up to eight fused benzene rings and five Clar π‐aromatic sextets. In contrast to early HMO ring current calculations and more recent ab initio calculations of π‐electron density, our current calculations are based on a graph theoretical model in which contributions to ring currents comes from currents associated with individual conjugated circuits. In this contribution, we consider several larger fully benzenoid hydrocarbons having from 9 to 13 fused rings and from six or seven π‐aromatic sextets. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

Exploration of the interrupted Fischer indolization reaction

A convergent method to access the fused indoline ring system present in a multitude of bioactive molecules has been developed. The strategy involves the condensation of hydrazines with latent aldehydes to ultimately deliver indoline-containing products by way of an interrupted Fischer indolization sequence. The method is convergent, mild, operationally simple, broad in scope, and can be used to access enantioenriched products. In addition, our approach is amenable to the synthesis of furoindoline and pyrrolidinoindoline natural products as demonstrated by the concise formal total syntheses of physovenine and debromoflustramine B. The strategy will likely enable the synthesis of more complex targets such as the communesin alkaloids.