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1.
The solution structure of Cobeta-5'-deoxyadenosylimidazolylcobamide, Ado(Im)Cbl, the coenzyme B(12) analogue in which the axial 5,6-dimethylbenzimidazole (Bzm) ligand is replaced by imidazole, has been determined by NMR-restrained molecular modeling. A two-state model, in which a conformation with the adenosyl moiety over the southern quadrant of the corrin and a conformation with the adenosyl ligand over the eastern quadrant of the corrin are both populated at room temperature, was required by the nOe data. A rotation profile and molecular dynamics simulations suggest that the eastern conformation is the more stable, in contrast to AdoCbl itself in which the southern conformation is preferred. Consensus structures of the two conformers show that the axial Co-N bond is slightly shorter and the corrin ring is less folded in Ado(Im)Cbl than in AdoCbl. A study of the thermolysis of Ado(Im)Cbl in aqueous solution (50-125 degrees C) revealed competing homolytic and heterolytic pathways as for AdoCbl but with heterolysis being 9-fold faster and homolysis being 3-fold slower at 100 degrees C than for AdoCbl. Determination of the pK(a)'s for the Ado(Im)Cbl base-on/base-off reaction and for the detached imidazole ribonucleoside as a function of temperature permitted correction of the homolysis and heterolysis rate constants for the temperature-dependent presence of the base-off species of Ado(Im)Cbl. Activation analysis of the resulting rate constants for the base-on species show that the entropy of activation for Ado(Im)Cbl homolysis (13.7 +/- 0.9 cal mol(-1) K(-1)) is identical with that of AdoCbl (13.5 +/- 0.7 cal mol(-1) K(-1)) but that the enthalpy of activation (34.8 kcal mol(-1)) is 1.0 +/- 0.4 kcal mol(-1) larger. The opposite effect is seen for heterolysis, where the enthalpies of activation are identical but the entropy of activation is 5 +/- 1 cal mol(-1) K(-1) less negative for Ado(Im)Cbl. Extrapolation to 37 degrees C provides a rate constant for Ado(Im)Cbl homolysis of 2.1 x 10(-9) s(-1), 4.3-fold smaller than for AdoCbl. Combined with earlier results for the enzyme-induced homolysis of Ado(Im)Cbl by the ribonucleoside triphosphate reductase from Lactobacillus leichmannii, the catalytic efficiency of the enzyme for homolysis of Ado(Im)Cbl at 37 degrees C can be calculated to be 4.0 x 10(8), 3.8-fold, or 0.8 kcal mol(-1), smaller than for AdoCbl. Thus, the bulky Bzm ligand makes at best a <1 kcal mol(-1) contribution to the enzymatic activation of coenzyme B(12).  相似文献   

2.
3.
A force field for the cobalt (III) corrinoids (derivatives of vitamin B12) for use with a modified version of the molecular mechanics program 2(87) has been developed empirically around 19 cobalt corrinoid crystal structures. Bond lengths, bond angles and torsional angles are reproduced with r.m.s. differences of 0.01 Å, 2.4 °, and 4.2 °, respectively, within the standard deviation of the mean of these parameters found in the solid state. The axial ligand occupying the lower coordination site in the cobalamins, 5,6-dimethylbenzimidazole, is shown to have very limited rotational freedom and is constrained by the downward-pointing b and d propionamide side chains of the corrin ring. Strain-energy profiles for rotation of the side chains of the corrin ring show the existence of several local energy minima and this explains the observed variability in the orientations of these side chains in the solid state. The known change in conformation which occurs in the C ring when the e side chain is epimerized from the lower to the upper face of the corrin ring in cyano-13-epicobalamin is correctly predicted, provided the starting conformation of the C ring is unbiased. A study of cyano-8-epicobalamin indicates that an analogous conformational change does not occur in the B ring and the epimerized d side chain assumes an equatorial orientation relative to the corrin ring. Parameters for the Co---C bond in alkylcobalamins were developed and the structure of methyl- and adenosylcobalamin are accurately reproduced. An examination of the strain energy consequences of rotation of the adenosyl ligand about the Co---C bond identifies a number of low-energy conformations at least two of which, in which adenosyl lies over the “southern” and “eastern” portions of the corrin ring, respectively, have been previously deduced from NMR observations. Coordinated neopentyl in neopentylcobalamin is much more hindered to rotation about the Co---C bond and the lowest conformation finds two γ(C) atoms straddling the upwardly projecting C46 methyl group of the corrin.  相似文献   

4.
5.
Rhodium(I) complexes formed by (−)-(2S,4S)-2,4-bis(diphenylphosphino)pentane (BDPP) are efficient catalysts for the hydrogenation of acetophenone and acetophenonebenzylimine. The composition of the solvent mixture and the reaction temperature have a marked influenced on the enantioselectivity. These effects are thought to be related to the enhanced conformational flexibility of six-membered rings when simple substrates without functional groups are coordinated to the rhodium. X-ray crystallographic studies reveal that in [Rh((S,S)-BDPP)NBD]+ (1) the ligand is in a chair conformation, and that in [Rh((S,S)-BDPP)COD]+ (2) the chelate ring is in a δ-skew conformation. Studies of Rh((S,S)-BDPP)(NBD)Cl (3) in solution indicate a trigonal bipyramidal structure with a chair conformation of the ring in aromatic solvents and a conformationally labile ring in methanol.  相似文献   

6.
采用密度泛函理论DFT/BP86方法研究金属串配合物[MM'M″(dpa)4(Cl)2] [MM'M″=CoCoCo(1), CoCoRh(2), CoRhRh(3), NiCoRh(4)] 的结构和电子输运性质. 结果表明, 配合物1, 2和4的最稳定自旋态均存在1个(MM'M″)6+的离域$\sigma_{3}^{3}$键($\sigma^{2}\sigma_{nb}^{1}\sigma^{*0}$); 但配合物3具有1个(MM'M″)6+的离域$\sigma_{3}^{4}$键($\sigma^{2}\sigma_{nb}^{2}\sigma^{*0}$)和2个$\pi_{3}^{5}$键($\pi^{4}\pi_{nb}^{4}\pi^{*2}$), 故Rh—Rh键和Co—Rh键较强; Rh的引入使M—M键增强, Ni的引入则使M—M键减弱, 键强次序为Rh—Rh>Co—Rh>Co—Co>Ni—Co. 配合物14的传输通道均含有πσ型轨道. 正偏压下, 配合物2和3的电流大于配合物1和4的. 负偏压下, 配合物4中出现负微分电阻效应. 配合物3中形成传输通道的σnbα/βπ*α/β轨道能级分裂明显, (MM'M″)6+β自旋的π*轨道的贡献(88%)比α自旋(74%)的大, 使β自旋的电子更易传输, 具有较好的自旋过滤效应(70%80%).  相似文献   

7.
The spirocarbon C6 of colorless forms of a fluoran compound is the base of the disengagement from the bond C(sp3)–O by the accessibility of the electrophilic H+, the phthalide ring is cleaved and this ring becomes a benzene ring D and a carboxyl group as colored forms. The crystal and molecular structures of colored forms 2-anilino-3-methyl-6-diethylamino-9-(o-carboxyphenyl) xanthene C31H29N2O3+·Cl (1) and 2-methyl-3-anilino-7-dibutylamino-9-(o-carboxyphenyl) xanthene C35H37N2O3+·Cl (2) complexes were determined by single-crystal X-ray diffraction analysis. The xanthene ring skeletons of colored forms 1 and 2 have planar geometries, and the ring junctions between the xanthene ring and the benzene ring D make a small angle compared to the colorless forms which are almost at right angles to the xanthene ring skeletons. 1 and 2 are just different from the ethyl and butyl groups in two side chains R1 and R2, but the rigid body and internal motions in molecules differ at R1 and R5 (the ring F). The charges of the root atom N1 of the two side chains are increased by π-electron densities, those from N1 to C6 atoms show distinct odd alternant system, and two oxygens (O2 and O3) of the carboxyl group are decreased. The group charges of N1 of colored forms are positive, while those of the colorless forms are negative. Colored forms make networks of X–HY contacts with an anion Cl and the anion in the nucleus of network. It is explained here that delicate positive charges of atoms N2 and O2 cause ClH(N2)–N2 and ClH(O2)–O2 contacts.  相似文献   

8.
The crystal structure of bis(trifluoroacetato)-(N-methyl-meso-tetraphenylporphyrinato) thallium(III), Tl(N---Me---tpp)(CF3CO2)2 (2), was established and the coordination sphere around the Tl3+ ion is described as 4:3 tetragonal base–trigonal base piano stool seven-coordinate geometry in which the two cis CF3CO2 − groups occupy two apical sites. The plane of the three pyrrole nitrogen atoms [i.e. N(2), N(3) and N(4)] strongly bonded to Tl3+ is adopted as the reference plane 3N. The pyrrole N(1) ring bearing the methyl group [i.e. C(45)H3] is the most deviated one from the 3N plane making a dihedral angle of 23.3° whereas smaller angles of 9.9, 2.7 and 4.7° occur with pyrroles N(2), N(3), and N(4), respectively. Because of the larger size of the thallium(III) ion, Tl is considerably out of the 3N plane; its displacement of 1.02 Å is in the same direction as that of the two apical CF3CO2 − ligands. The intermolecular trifluoroacetate exchange process for 2 in CD2Cl2 solvent is examined through 19F and 13C NMR temperature-dependent measurements. In the slow-exchange region, the CF3 and carbonyl (CO) carbons of the CF3CO2 − groups in 2 are separately located at δ 114.3 [1J(C–F)=290 Hz, 3J(Tl–C)=411 Hz] and 155.1 [2J(C–F)=37 Hz, 2J(Tl–C)=204 Hz], respectively, at −106 °C. In the same slow-exchange region, the fluorine atoms of 2, Tl(N---Me---tpp)(CF3CO2)+ and the free CF3CO2 − are located at δ −73.76 [4J(Tl–F)=44 Hz], −73.30 [4J(Tl–F)=22 Hz], and −76.15 ppm at −97 °C, respectively.  相似文献   

9.
The enzymatic "activation" of coenzyme B12 (5'-deoxyadenosylcobalamin, AdoCbl), in which homolysis of the carbon-cobalt bond of the coenzyme is catalyzed by some 10(9)- to 10(14)-fold, remains one of the outstanding problems in bioinorganic chemistry. Mechanisms which feature the enzymatic manipulation of the axial Co-N bond length have been investigated by theoretical and experimental methods. Classical mechanochemical triggering, in which steric compression of the long axial Co-N bond leads to increased upward folding of the corrin ring and stretching of the Co-C bond is found to be feasible by molecular modeling, but the strain induced in the Co-C bond seems to be too small to account for the observed catalytic power. The modeling study shows that the effect is a steric one which depends on the size of the axial nucleotide base, as substitution of imidazole (Im) for the normal 5,6-dimethylbenzimidazole (Bzm) axial base decreases the Co-C bond labilization considerably. An experimental test was thus devised using the coenzyme analog with Im in place of Bzm (Ado(Im)Cbl). Studies of the enzymatic activation of this analog by the B12-dependent ribonucleoside triphosphate reductase from Lactobacillus leichmannii coupled with studies of the non-enzymatic homolytic lability of the Co-C bond of Ado(Im)Cbl show that the enzyme is only slightly less efficient (3.8-fold, 0.8 kcal mol(-1)) at activating Ado(Im)Cbl than at activating AdoCbl itself. This suggests, in agreement with the modeling study, that mechanochemical triggering can make only a small contribution to the enzymatic activation of AdoCbl. Another possibility, electronic stabilization of the Co(II) homolysis product by compression of the axial Co-N bond, requires that enzymatic activation be sensitive to the basicity of the axial nucleotide. Preliminary studies of the enzymatic activation of a coenzyme analog with a 5-fluoroimidazole axial nucleotide suggest that the catalysis of Co-C bond homolysis may indeed be significantly slowed by the decrease in basicity.  相似文献   

10.
A novel cyclouridylic acid 1 having a propylene bridge between the uracil 5 position and the 5′-phosphate group was synthesized. The structure of 1 was analyzed by 1H NMR, and CD spectroscopy, which suggested that the cyclonucleotide 1 was highly stabilized in a considerably rigid g+/C3′-endo conformation with the base orientation of anti. The molecular mechanics calculation of 1 gave a similar conclusion.  相似文献   

11.
DFT method (B3LYP) with 6-31G* basis set was utilized in the computation of a fully optimized structure, net atomic charges and spin densities of the intermediate of cytochrome P-450-oxoiron(IV) porphyrin cation radical, compound I – in the presence of axial ligand such as thiolate (SMe) imidazole (IM), phenoxide (OPh), methoxide (OMe) and chloride (Cl). The results show doublet states in compound I are about 2–4 kcal/mol more stable than quartet states for all aforementioned ligands, and the doublet state is the ground state in all cases. However, electron donor ability of the ligands are in the order of SMe− > IM > OMe− > OPh− > Cl. Also the active oxidant intermediate of cytochrome P-450 between different mesomeric structures select sulfur oxygen radical type structure and can be viewed as (RS)Fe(IV)(O)(Por). In horseraddish peroxidase (HRP) and peroxidase with histidine axial ligand π cation radical character of porphyrin ring is preferred (Im)Fe(IV)(O)(Por). For the ligands such as OMe, OPh and Cl oxidation mainly took place on the iron and the active intermediate can be viewed as (L)Fe(V)(O)(Por) with one unpaired electron localized on the iron.  相似文献   

12.
Goswami A  Singh AK  Venkataramani B 《Talanta》2003,60(6):1141-1154
The silica gel modified with (3-aminopropyl-triethoxysilane) was reacted with 5-formyl-8-hydroxyquinoline (FHOQx) to anchor 8-quinolinol ligand on the silica gel. It was characterised with cross polarisation magic angle spinning (CPMAS) NMR and diffuse reflectance infrared Fourier transformation (DRIFT) spectroscopy and used for the preconcentration of Cu(II), Pb(II), Ni(II), Fe(III), Cd(II), Zn(II) and Co(II) prior to their determination by flame atomic absorption spectrometry. The surface area of the modified silica gel has been found to be 227 m2 g−1 and the two pKa values as 3.8 and 8.0. The optimum pH ranges for quantitative sorption are 4.0–7.0, 4.5–7.0, 3.0–6.0, 5.0–8.0, 5.0–8.0, 5.0–8.0 and 4.0–7.0 for Cu, Pb, Fe, Zn, Co, Ni and Cd, respectively. All the metals can be desorbed with 2.5 mol l−1 HCl or HNO3. The sorption capacity for these metal ions is in range of 92–448.0 μmol g−1 and follows the order Cd3, NaCl, NaBr, Na2SO4 and Na3PO4, glycine, sodium citrate, EDTA, humic acid and cations Ca(II), Mg(II), Mn(II) and Cr(III) in the sorption of all the seven metal ions are reported. The preconcentration factors are 150, 250, 200, 300, 250, 300 and 200 for Cd, Co, Zn, Cu, Pb, Fe and Ni, respectively and t1/2 values <1 min except for Ni. The 95% extraction by batch method takes ≤25 min. The simultaneous enrichment and determination of all the metals are possible if the total load of the metal ions is less than sorption capacity. In river water samples all these metal ions were enriched with the present ligand anchored silica gel and determined with flame atomic absorption spectrometer (R.S.D.≤6.4%). Cobalt contents of pharmaceutical samples (vitamin tablet) were preconcentrated with the present chelating silica gel and estimated by flame AAS, with R.S.D.1.4%. The results are in the good agreement with the certified value, 1.99 μg g−1 of the tablets. Iron and copper in certified reference materials (synthetic) SLRS-4 and SLEW-3 have been enriched with the modified silica gel and estimated with R.S.D.<5%.  相似文献   

13.
14.
The molecular structure and conformational stability of allylisocyanate (CH2CHCH2NCO) molecule was studied using the ab initio and DFT methods. The geometries of possible conformers, C-gauche (δ=120°, θ=0°) (δ=C=C–C–N and θ=C–C–N=C) and C-cis N-trans (δ=0° and θ=180°) were optimized employing HF/6-31G*, MP2/6-31G* levels of theory of ab initio and BLYP, B3LYP, BPW91 and B3PW91 methods of DFT implementing the atomic basis set 6-311+G(d,p). The structural and physical parameters of the above conformers were discussed with the experimental and theoretical values of the related molecules, methylisocyanate and 3-fluoropropene. It has been found that the N=C=O bond angle is not linear as the experimental result for both the conformers and the theoretical bond angle is 173°. The rotational potential energy surfaces have been performed at the HF/6-31G*, and MP2/6-31G* levels of theory. The Fourier decomposition potentials were analysed at the HF/6-31G*, and MP2/6-31G* levels of theory. The HF/6-31G* level of theory predicted that the C-gauche conformer is more stable than the C-cis N-trans conformer by 0.41 kJ/mol, but the MP2 and DFT methods predicted the C-cis N-trans conformer is found to be more stable than the C-gauche conformer. The calculated chemical hardness value at the HF/6-31G* level of theory predicted the C-cis N-trans form is more stable than C-gauche form, whereas the chemical hardness value at the MP2/6-31G* level of theory favours the slight preference towards the C-gauge conformer.  相似文献   

15.
Theoretical and spectroscopic (IR and Raman) study of different 7-hydroxy-4-methylcoumarin (mendiaxon) systems (mend, mendNa, mendCu, mendH and mendH · 2H2O) were performed at B3LYP/6-31G(d) and B3LYP/6-31++G(d,p) levels of theory. The geometric and electronic structures as well as the vibrational behavior of the systems studied were discussed: (1) as to the changes that occurred in the anion coumarin ring upon the mend–X+ (X+ =Na+, Cu+, H+) interactions and (2) as to the changes that occurred in mendH due to hydrogen bondings in mendH · 2H2O. The largest bond length changes in the anion coumarin ring were obtained for mendH and the smallest ones for mendNa. The bond length changes were mainly produced from the electrostatic effect of the positive charge of X. The induced polarization of the C=O bond upon the mend–X+ interactions was found to be opposite to the basic one and it led to shorter C=O bond lengths (higher ν(C=O) frequencies) in the order: mendNa, mendCu and mendH. Conversely, upon the hydrogen bonding the induced polarization of the C=O bond was found in the same direction as the basic one and it produced elongation to the C=O bond length (lower ν(C=O) frequency). On the basis of the correlations found, the ν(C=O) positions in mendNa, mendCu, mendH and mendH · 2H2O were explained.  相似文献   

16.
One-electron oxidation of the ferrous tris-PQ complex, a model for lipoxygenase, was attempted using oxidants such as •OH, N3, Br•-2, Tl2+ and TlOH+. •OH was found to react with the complex with a bimolecular rate constant of (3.9±0.6)x109dm3mol-1s-1, a rate which is not very dissimilar to that for the reaction with the ligand PQ. However the product of the reaction was found to be a OH-adduct rather than a cation radical. No reaction was found to occur with N3 or Br•-2. Both Tl2+ and TlOH+ reacted with the complex to form its oxidised species with rate constants of (7.0±1)x108dm3mol-1s-1 and (4.0±0.8)x108dm3mol-1s-1, respectively. From a comparison of the rate constants and the transient spectra it was concluded that the centre of oxidation is the ligand rather than the metal.  相似文献   

17.
A variety of conformations for three model calix[4]arenes with 8 or 12 OH groups have been investigated by calculations at density functional (RI-BP86) and RI-MP2 level of approximation. The calixarenes form stable complexes with the alkali metal cations of lithium up to caesium. For the investigations all-valence electron basis sets as well as various effective core potentials were probed. The stabilities of complexes were analysed in comparison with the corresponding benzene complexes, M+·C6H6. The formation of the calixarene metal complexes is considered in two steps, (a) in a distortion from the equilibrium conformation of the free calixarenes and (b) subsequent complexation. The distortion energies are small for the ‘crown’ and larger for the ‘boat’ conformations. On the other hand the latter are more stabilized by significant interaction energy of the cation with two adjacent π-systems of the aromatic rings. As a result, these two conformations are of similar stabilities for K+ to Cs+ complexes with resorc[4]arenes, with a slight advantage for the ‘boat’ structure. The most stable conformation for the coordination products of these cations with the calix[4]arene with 12 OH groups is a slightly flattened ‘crown’ that is derived by maximum hydrogen bonding of the OH-groups and the most effective cation-π interactions. Special cases are complexes of Li+ and Na+ which in most instances prefer the coordination on the oxygen atoms of the upper rim of the calixarene cavities and thus form ‘boat’-like structures.  相似文献   

18.
N-(ω-carboxyalkyl)morpholine hydrochlorides, OC4H8N(CH2)nCOOH·HCl, n=1–5, were obtained and analyzed by 13C cross polarization (CP) magic angle spinning (MAS) NMR, FTIR and PM3 calculations. The structure of N-(3-carboxypropyl)morpholine hydrochloride (n=3) has been solved by X-ray diffraction method at 100 K and refined to the R=0.031. The crystals are monoclinic, space group P21/c, a=14.307(3), b=9.879(2), c=7.166(1) Å, β=93.20(3)°, V=1011.3(3) Å3, Z=4. In this compound the nitrogen atom is protonated and two molecules form a centrosymmetric dimer, connected by two N+–HCl (3.095(1) Å) and two O–HCl (3.003(1) Å) hydrogen bonds. 13C CP MAS NMR spectra, contrary to the solution, showed non-equivalence of the ring carbon atoms. The PM3 calculations predict a molecular dimer without proton transfer for an HCl complex, while for an HBr complex an ion pairs with proton transfer, and reproduces correctly the conformation of both dimers but overestimates H-bond distances. Shielding constants calculated from the PM3 geometry of ion pairs gave a linear correlation with the 13C chemical shifts in solids.  相似文献   

19.
Elastic differential scattering measurements have been performed on Ar+ + Ar and Xe+ + Xe. The rainbow scattering angle is found at τ = Eθ ≈ 115 eV deg for Ar+2 and τ ≈ 93 eV deg for Xe+2. These data are consistent with a potential well depth of 1.25 eV for Ar+2 and 0.97 eV for Xe+2.  相似文献   

20.
A new optically active ONNO-type tetradentate ligand, ethylenediamine-N,N′- di-S-isobutylacetate (SS-eniba), has been synthesized. During the preparation of diaqua cobalt(III) complexes of SS-eniba, [Co(SS-eniba)(H2O)2]+, the title ligand has coordinated stereospecifically to the cobalt(III) ion to give three isomers, Δ-s-cis, Δ-uns-cis and Λ-uns-cis, which have been isolated and characterized via electronic absorption, circular dichroism (CD), and 1H NMR spectroscopy, along with elemental analysis data. The preparation of Δ-s-cis-[Co(SS-eniba)Cl2]+ and Δ-s-cis-[Co(SS-eniba)CO3]+ are also reported.  相似文献   

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