糖蛋白/糖肽的分离富集方法*

蛋白质糖基化是一种重要的翻译后修饰,糖基化对蛋白质的结构和功能有着重要的影响。目前,作为蛋白质组学的一个组成部分,糖蛋白质组学是备受关注的研究热点。而从复杂的生物样品体系中富集糖蛋白/ 糖肽是蛋白质糖基化研究的重点和难点,本文就糖蛋白/糖肽分离富集方法的研究进展和应用作了简要概述。这些方法包括常用的凝集素亲和法、硼酸法、肼化学法和亲水作用法,还包括分子筛法、强阳离子交换法等新方法。     

利用亲水富集策略分析人血浆中N-糖基化蛋白及N-糖类型

蛋白质的N-糖基化是最重要的翻译后修饰之一,许多已知的血浆肿瘤诊断标志物及治疗靶标都是N-糖基化蛋白。针对血浆的糖蛋白质组研究有利于发现新的蛋白标志物。然而,血浆蛋白质浓度分布的动态范围非常宽,且同一位点上的糖链存在微观不均一性,影响了血浆中糖蛋白的鉴定效率。本文利用亲水材料ZIC-HILIC制备亲水富集柱分别对人血浆中的N-糖链和N-糖肽进行富集,并结合碱性反相色谱进行肽段的预分离和高准确度质谱分析,最终在健康人的血浆中鉴定到了299个糖基化蛋白、637个糖基化位点,并识别出31种不同的糖型。在这些鉴定到的糖基化位点中,新发现有107个N-糖基化位点(占总位点数的16.8%)。本方法操作简单,可以有效富集N-糖肽和N-糖,为在血浆中寻找糖蛋白和糖链生物标志物提供了可靠的手段。     

新型核壳型亲水聚合物-硅胶杂化填料的合成及其在蛋白质N-糖链富集中的应用

蛋白质的N-糖基化修饰与多种重要的生理、病理进程密切相关,是多种重大疾病诊断标志物研究的热点。由于糖蛋白本身多是低丰度表达的蛋白质,且糖链结构具有高度微不均一性,这使得蛋白质糖基化修饰的分析具有一定的挑战。本研究利用表面引发-原子转移自由基聚合(SI-ATRP)法,以带有双键的氨基葡萄糖为单体(GMAG),成功制备了新型核壳型亲水聚合物-硅胶杂化填料(pGMAG-SiO₂)。由于在硅胶表面引入致密的亲水聚合物层,该填料不仅保持了硅胶良好的机械强度,而且显著提高了其亲水性,因此非常适合作为亲水填料用于蛋白质的N-糖链富集。以麦芽七糖和鸡卵清蛋白的N-糖链为研究对象,考察了该填料对N-糖链的富集效果,并将该杂化填料成功用于人血浆中糖蛋白N-糖链的富集检测,共鉴定了47种糖型。以上结果表明,pGMAG-SiO₂填料对N-糖链具有较高的亲和性,可以用于N-糖链的高覆盖率鉴定。     

糖蛋白/糖肽分离富集中的化学

糖蛋白在许多生命过程中有重要的作用.糖蛋白/糖肽在复杂生物样品中的低丰度以及糖链结构的微观不均一性使其分离富集成为糖蛋白质组学研究中的难点,本文将糖蛋白/糖肽分离富集过程中使用的化学方法根据所应用的化学反应或外源功能基团的种类分为:肼化学方法,氨化学方法,硼酸化学法, β-消除米氏加成化学法;并对各化学方法的原理和优缺点进行了描述和讨论.     

N-糖基化蛋白质组样品富集策略的研究进展

蛋白质的糖基化是生物体内重要的蛋白质翻译后修饰之一,但其丰度通常较低,糖基化蛋白质酶解肽段中仅有2%~5%为糖基化肽段,因此,为实现糖基化蛋白质组的深度覆盖分析,对糖基化蛋白质/肽段进行富集是非常必要的。该文对糖基化蛋白质组样品不同富集方法的原理、特点以及最新研究进展进行了综述,同时也对N-糖基化蛋白质组学富集策略的发展前景进行了展望。     

功能化磁性纳米材料在糖蛋白及糖肽富集中的研究进展

蛋白质糖基化作为最重要的翻译后修饰之一,在生物体诸如细胞信号转导、蛋白质翻译调控、免疫应答等诸多生命过程中发挥重要作用。此外,蛋白质的异常糖基化还与肿瘤等疾病的发生发展密切相关,这为以糖蛋白为目标的疾病生物标志物的发现提供了可能。尽管质谱已经成为糖蛋白质组学的重要分析工具,但糖肽的低丰度和低电离效率使得其直接质谱分析仍面临挑战。在糖蛋白质组学研究中,从复杂的生物样品中富集糖蛋白和糖肽是重要的环节。磁性固相萃取(MSPE)是一种操作简单、成本低和萃取效率高的样品预处理方法。在磁性固相萃取中,磁性吸附剂是影响萃取效果的关键,将功能化磁性纳米材料作为吸附剂进行糖蛋白质组学研究已经得到广泛应用。该文综述了糖分子、离子液体、凝集素、硼酸亲和配体、金属有机框架、共价有机骨架等功能化磁性纳米材料的制备及其在糖蛋白及糖肽富集中的应用。上述功能化磁性纳米材料具有高比表面积、大量作用位点等特点,其富集机理包括亲水相互作用色谱、凝集素亲和作用色谱、硼酸化学法和肼化学法等,主要应用于血清、血浆、细胞、组织、唾液等样品的糖蛋白和糖肽的富集。该文引用了近十年来发表的约90篇源于科学引文索引(SCI)与中文核心期刊的相关论文,并于文末对磁性纳米材料在糖蛋白和糖肽富集领域的发展趋势进行了展望。     

整体柱用于糖蛋白质分离富集研究新进展

蛋白质糖基化是最常见、最重要的蛋白质翻译后修饰之一,由糖链和多肽链以多种形式共价修饰而成.糖蛋白在生物体内种类繁多,分布广泛,具有重要的生理功能.复杂生物体系中糖蛋白的绝对丰度低,高丰度非糖蛋白质的存在对低丰度糖蛋白质产生夹带、包覆以至掩盖的作用,以现有的技术难以发现并分离鉴定大多数低丰度糖蛋白,已成为当前糖蛋白质组学...     

4-巯基苯硼酸修饰二维二硫化钼纳米复合材料的制备及其用于N-糖肽特异性富集

蛋白质的N-糖基化修饰在多种生物过程中发挥着至关重要的作用，近年来的许多研究证实异常的蛋白质糖基化与多种疾病的发生发展密切相关，表明糖基化蛋白质具有较大的潜力成为新的生物标志物或者药物靶标。在样本的处理过程中，对N-糖基化肽段进行富集分离后再进行质谱分析已经成为糖蛋白质组学分析前的必要步骤。但是，由于复杂生物样本中N-糖基化肽段的丰度低和离子化效率差等问题，通过质谱鉴定N-糖肽仍然是一项艰巨的任务。研究通过将纳米金线（Au）、4-巯基苯硼酸（4-MPB）与超薄二维二硫化钼（2D-MoS₂）进行反应，成功制备了一种用于富集蛋白质N-糖基化肽段的新型功能纳米复合材料（MoS₂/Au/4-MPB）。二硫化钼纳米材料的层状结构可以为反应提供大量的可修饰位点，便于修饰纳米金线；功能基团4-巯基苯基硼酸对N-糖肽具有高度的选择性，可以对生物样品中N-糖基化肽段进行特异性富集。使用标准蛋白人免疫球蛋白G（IgG）和牛血清白蛋白（BSA）胰蛋白酶酶切产物对新型功能纳米材料的N-糖基化肽段的富集性能进行评估，其灵敏度达到5 fmol，选择性达到1：1000。将其用于生物样品中N-糖基化肽段的富集，从50 μg尿液外泌体蛋白胰蛋白酶酶切产物中共富集鉴定出768个N-糖肽，归属于377个蛋白质。这些结果表明该新型功能纳米复合材料对复杂生物样品中N-糖肽的选择富集有着巨大的应用潜力，为糖蛋白质组的研究提供了一种新方法。     

半胱氨酸基麦芽糖修饰亲水硅胶的制备及其对糖肽的富集

糖蛋白与糖肽在复杂生物体系中丰度一般较低,为了在糖蛋白质组学研究中深入和全面分析鉴定糖基化位点与糖链,通常需要进行富集前处理操作。该文设计并合成了一种半胱氨酸基麦芽糖修饰亲水硅胶分离介质(Cys-Mal@SiO_2),将其装填入固相萃取柱中制备新型亲水固相萃取柱。在以人免疫球蛋白G酶解液为样品进行富集鉴定时,Cys-Mal@SiO_2鉴定糖肽的质谱信号强度和信噪比比半胱氨酸修饰硅胶(Cys@SiO_2)、麦芽糖修饰硅胶(Mal@SiO_2)和商品化ZIC-HILIC更高。在复杂的鼠肝蛋白质提取物的糖蛋白质组学分析中,Cys-Mal@SiO_2共鉴定出1 551条糖肽,属于466个糖蛋白的906个N-糖基化位点,比Cys@SiO_2和Mal@SiO_2鉴定糖肽数、蛋白质数和N-糖基化位点数分别多211、67、127个和289、76、193个。将Cys-Mal@SiO_2成功应用于低丰度糖肽的选择性富集与鉴定,在糖蛋白质组学研究中体现出良好的应用潜力。     

用于N-糖肽/糖蛋白分离富集的新型材料

蛋白质糖基化在调节各种复杂的生物过程中,如分子识别、免疫应答和蛋白质折叠等起着至关重要的作用。由于糖肽/糖蛋白在复杂生物样品或临床样品中丰度较低,进行糖蛋白组学分析前往往需要进行目标蛋白的分离富集。研究开发具有高效糖蛋白分离富集能力的新型材料对糖蛋白/糖肽的研究具有重要意义。近年来报道了许多新型糖蛋白分离富集材料,如有机高分子材料、生物基材料、新型有机骨架材料和新型功能复合材料等。这些材料因其结构、生物相容性和理化性质等特点,从不同层面推动了糖蛋白分离富集技术的发展。本文就目前国内外有关糖肽/糖蛋白分离富集的新型材料进行了总结和讨论,并对其未来发展提出展望。     

Cell surface glycoprotein profiling of cancer cells based on bioorthogonal chemistry

Bioorthogonal chemistry refers to chemical reactions that can occur within a living system without altering native biochemical processes. Applications of this concept extend to studies on a group of biomolecules that includes glycans, proteins, and lipids. In this study, a strategy for isolating cell surface glycoproteins and based on bioorthogonal chemistry was employed to identify new cancer-related glycoproteins. A novel alkyne reagent containing one disulfide bond was synthesized for the enrichment of glycoproteins metabolized with peracetylated N-azidoacetylmannosamine, which was applied on three different cancer cell lines, and all isolated proteins were analyzed by high-performance liquid chromatography-tandem mass spectrometry. The strategy of purifying cell surface glycoproteins introduced in this article was shown to be reliable, and a total of 56 cell surface glycoproteins were identified. Neuronal cell adhesion molecule was found uniquely expressed in A549 lung adenocarcinoma, and its expression in non-small-cell lung carcinomas was detected by immunohistochemistry. Furthermore, a significant increase of neuronal cell adhesion molecule expression was identified in non-small-cell lung adenocarcinoma compared with adjacent noncancerous tissues, and could be a novel potential target and marker in cancer treatment and detection.     

Boronic Acids as Bioorthogonal Probes for Site‐Selective Labeling of Proteins

Over the past two decades, bioorthogonal chemistry has become a preferred tool to achieve site‐selective modifications of proteins. However, there are only a handful of commonly applied bioorthogonal reactions and they display some limitations, such as slow rates, use of unstable or cytotoxic reagents, and side reactions. Hence, there is significant interest in expanding the bioorthogonal chemistry toolbox. In this regard, boronic acids have recently been introduced in bioorthogonal chemistry and are exploited in three different strategies: 1) boronic ester formation between a boronic acid and a 1,2‐cis diol; 2) iminoboronate formation between 2‐acetyl/formyl‐arylboronic acids and hydrazine/hydroxylamine/semicarbazide derivatives; 3) use of boronic acids as transient groups in a Suzuki–Miyaura cross‐coupling or other reactions that leave the boronyl group off the conjugation product. In this Review, we summarize progress made in the use of boronic acids in bioorthogonal chemistry to enable site‐selective labeling of proteins and compare these methods with the most commonly utilized bioorthogonal reactions.     

多孔有机骨架材料对顺式二醇化合物富集分离的研究进展

基于在碱性环境下硼酸能与顺式二醇化合物可逆共价结合形成稳定的五元或六元环酯,而在酸性环境下环酯开环释放顺式二醇化合物这一特性,设计合成高效、高选择性、高富集性能的硼亲和材料的研究备受关注。近年来,许多研究工作者合成了各种类型的硼亲和材料,应用于高选择性富集顺式二醇化合物。金属有机骨架(MOFs)和共价有机骨架(COFs)由于具有孔径可调、高孔隙率、高比表面积、骨架结构可调和化学及热稳定性良好等特点,被广泛应用于色谱分离和样品前处理领域。为赋予MOFs和COFs材料对顺式二醇化合物的富集选择性,各种不同结构和不同种类的硼酸修饰的MOFs和COFs被合成出来。该综述主要是对近几年来80余篇源于科学引文索引关于硼酸功能化MOFs和COFs的种类、合成方法及其应用文章的总结,包括“金属配体-片段共组装”“合成后修饰”和“自下而上”的硼酸功能化多孔材料的修饰策略,以及硼酸功能化MOFs和COFs的种类,介绍了其在化学分析和生物分析领域的发展概况和应用前景,客观评价了硼酸功能化MOFs和COFs的区别和优缺点。该文旨在让研究人员能够充分了解近几年硼酸功能化多孔有机骨架材料的研究现状、掌握合成思路和方法,为其应用提供一定的理论指导和技术支撑,为加快硼酸功能化多孔有机骨架材料的商业化脚步贡献绵薄之力。     

A general approach for the purification and quantitative glycomic analysis of human plasma

The development of a general method for the purification and quantitative glycomic analysis of human plasma samples to characterize global glycosylation changes shall be presented. The method involves multiple steps, including the depletion of plasma via multi-affinity chromatography to remove high abundant proteins, the enrichment of the lower abundant glycoproteins via multi-lectin affinity chromatography, the isotopic derivatization of released glycans, and quantitative analysis by MALDI-TOF MS. Isotopic derivatization of glycans is accomplished using the well-established chemistry of reductive amination to derivatize glycans with either a light analog (¹²C anthranilic acid) or a heavy analog (¹³C₇ anthranilic acid), which allows for the direct comparison of the alternately labeled glycans by MALDI-TOF MS. The method displays a tenfold linear dynamic range for both neutral and sialylated glycans with sub-picomolar sensitivity. Additionally, by using anthranilic acid, a very sensitive fluorophore, as the derivatization reagent, the glycans can be analyzed by chromatography with fluorescence detection. The utility of this methodology is highlighted by the many diseases and disorders that are known to either show or be the result of changes in glycosylation. A method that provides a generic approach for sample preparation and quantitative data will help to further advance the field of glycomics.     

Complex Functional Systems with Three Different Types of Dynamic Covalent Bonds

Multicomponent surface architectures are introduced that operate with three different dynamic covalent bonds. Disulfide exchange under basic conditions accounts for the growth of π stacks on solid surfaces. Hydrazone exchange under acidic conditions is used to add a second coaxial string or stack, and boronic ester exchange under neutral conditions is used to co‐align a third one. The newly introduced boronic ester exchange chemistry is compatible with stack and string exchange without interference from the orthogonal hydrazone and disulfide exchange. The functional relevance of surface architectures with three different dynamic covalent bonds is exemplified with the detection of polyphenol natural products, such as epigallocatechin gallate, in competition experiments with alizarin red. These results describe synthetic strategies to create functional systems of unprecedented sophistication with regard to dynamic covalent chemistry.     

Boronic acid functionalized fibrous cellulose for the selective enrichment of glycopeptides

Enrichment of glycoproteins has been important because of their dynamicity and role in biological systems. Study of glycoproteins is complex because of the simultaneous glycosylation and deglycosylation inside the body. Often employed affinities for glycopeptides are hydrazide, boronic acid, or physiosorbed lectin on support materials. Cellulose, a natural polysaccharide, has rich surface chemistry, stable structure, low cost and availability in different variants. In present study, fibrous cellulose is oxidized using periodate to modify with boronic acid. Attachment of boronic acid is confirmed by Fourier transform infrared spectroscopy. Particle size and morphology of boronic acid@fibrous cellulose is studied by scanning electron microscopy. The enrichment efficiency is evaluated by using horseradish peroxidase as model protein. Boronic acid@fibrous cellulose is selective up to 1:250 for spiked horseradish peroxidase in bovine serum albumin digest, sensitive down to 0.1 femtomol and recovering 88.15% glycopeptides. Moreover, protein binding capacity is determined as 213 mg/g and 41% sequence coverage of horseradish peroxidase protein with all eight glycosylation sites detected. Total of 18 glycopeptides are enriched from immunoglobulin digest showing ability of boronic acid@fibrous cellulose to enrich glycoproteins from multiglycoforms. Enrichment from human serum recovers 18% extracellular and 72% secreted glycoproteins via bottom‐up approach and online tools.     

The Covalent Functionalization of Layered Black Phosphorus by Nucleophilic Reagents

Layered black phosphorus has been attracting great attention due to its interesting material properties which lead to a plethora of proposed applications. Several approaches are demonstrated here for covalent chemical modifications of layered black phosphorus in order to form P−C and P‐O‐C bonds. Nucleophilic reagents are highly effective for chemical modification of black phosphorus. Further derivatization approaches investigated were based on radical reactions. These reagents are not as effective as nucleophilic reagents for the surface covalent modification of black phosphorus. The influence of covalent modification on the electronic structure of black phosphorus was investigated using ab initio calculations. Covalent modification exerts a strong effect on the electronic structure including the change of band‐gap width and spin polarization.     

Boronic Acid‐Based Carbohydrate Sensing

The covalent boron–diol interaction enables elaborate design of boronic acid‐based saccharide sensors. Over the last decade, this research topic has been well developed thanks to the integration of boronic acid chemistry with a range of techniques, including supramolecular chemistry, materials chemistry, surface modification, and nanotechnology. New sensing strategies and platforms have been introduced and remarkable progress has been achieved to fully utilize the unique property of boron–diol interaction and to improve the binding affinity towards different targets, especially under physiological conditions. In this review, the latest progress over the past 30 months (from late 2012 to early 2015) is highlighted and discussed to shed light on this versatile and promising platform for saccharide sensing.     

水溶性硼酸亲和富集材料的制备及基于酶联免疫吸附法检测人肝微粒体糖蛋白的应用

生物样品中的糖蛋白丰度低,且在检测中易受到其它非糖蛋白的抑制和干扰,需在分析检测前对糖蛋白进行富集,但常规的基于固相材料的糖蛋白富集方法不易与生物技术中最经典的酶联免疫吸附法(ELISA)兼容.本研究以树枝状聚合物PAMAM 4.0为载体, 结合硼酸亲和技术,制备了新型水溶性硼酸亲和富集材料(DBC),并将其应用于基于ELISA的人肝微粒体中糖蛋白的检测.采用标准糖蛋白对DBC富集条件进行优化,然后考察其灵敏度和抗干扰能力,将优化后的方法应用于复杂样品人肝微粒体糖蛋白富集.结果表明,DBC对糖蛋白的富集选择性可高达100000倍,可将糖蛋白的富集信号提高100倍.以DBC为富集材料,与ELISA分析技术相结合,只需一步简单的孵育,即可实现生物样品中糖蛋白的高灵敏度、高选择性检测,为疾病相关的糖蛋白组学研究提供了一种有效的检测手段.     

Innovative Concepts for the Shaping and Modification of Cellulose

The conception and first results for a newly established project at the Center of Excellence for Polysaccharide Research in Jena are described. The work is focused on the investigation of new cellulose solvents and activating agents. Besides the use of a variety of Ionic Liquids it is the interaction of carbohydrates with boric acid and boronic acid, which will be exploited for the regeneration and chemical modification of the biomacromolecule. Two new ILs bearing cellulose activating anions were discovered which can dissolve the polysaccharide. Studies on the dissolution and chemical conversion of cellulose in ILs show the potential for homogeneous reactions but also reveal a number of side reactions especially for acetate containing ILs. In case of boronic acids a covalent binding on the secondary OH functions of glucose and glucose based polymers can be evidenced for the first time at intact molecules.