Dielectrophoretic sorting on a microfabricated flow cytometer: label free separation of Babesia bovis infected erythrocytes

Dielectrophoresis is a method that has demonstrated great potential in cell discrimination and isolation. In this study, the dielectrophoretic sorting of normal and Babesia bovis infected erythrocytes was performed using a microfabricated flow cytometer. Separation was possible through exploitation of the dielectric differences between normal and infected erythrocytes, essentially due to the higher ionic membrane permeability of B. bovis infected cells. Sorting experiments were performed inside a microchip made from Pt microelectrodes and SU-8 channels patterned on a glass substrate. Optimum cell separation was achieved at 4 MHz using an in vitro culture of B. bovis suspended in 63 mS/m phosphate buffer and applying a sinusoidal voltage of 15 V peak-to-peak. Normal erythrocytes experienced stronger positive dielectrophoresis (pDEP) than B. bovis infected cells, moving them closer to the microelectrodes. Under these conditions it was possible to enrich the fraction of infected cells from 7 to 50% without the need of extensive sample preparation or labelling. Throughout the experiments very few microliters of sample were used, suggesting that this system may be considered suitable for integration in a low-cost automated device to be used in the in situ diagnostic of babesiosis.     

16S rRNA gene-based metagenomic analysis reveals differences in bacteria-derived extracellular vesicles in the urine of pregnant and non-pregnant women

Recent evidence has indicated that bacteria-derived extracellular vesicles (EVs) are important for host–microbe communication. The aims of the present study were to evaluate whether bacteria-derived EVs are excreted via the urinary tract and to compare the composition of bacteria-derived EVs in the urine of pregnant and non-pregnant women. Seventy-three non-pregnant and seventy-four pregnant women were enrolled from Dankook University and Ewha Womans University hospitals. DNA was extracted from urine EVs after EV isolation using the differential centrifugation method. 16S ribosomal RNA (16S rRNA) gene sequencing was performed using high-throughput 454 pyrosequencing after amplification of the V1–V3 region of the 16S rDNA. The composition of 13 taxa differed significantly between the pregnant and non-pregnant women. At the genus level, Bacillus spp. EVs were more significantly enriched in the urine of the pregnant women than in that of the non-pregnant women (45.61% vs 0.12%, respectively). However, Pseudomonas spp. EVs were more dominant in non-pregnant women than in pregnant women (13.2% vs 4.09%, respectively). Regarding the compositional difference between pregnant women with normal and preterm delivery, EVs derived from Ureaplasma spp. and the family Veillonellaceae (including Megasphaera spp.) were more abundant in the urine of preterm-delivered women than in that of women with normal deliveries. Taken together, these data showed that Bacillus spp. EVs predominate in the urine of pregnant women, whereas Pseudomonas spp. EVs predominate in the urine of non-pregnant women; this suggests that Bacillus spp. EVs might have an important role in the maintenance of pregnancy.     

An Unusual Variation of Surface Tension with Concentration of Mixed Cationic‐anionic Surfactants

There are two platforms in the surface tension vs. concentration curve (γ‐lgC curve) of cationic‐anionic surfactant mixtures. The first platform is the same as that of common surfactant solution, and the cross point is the CMC. After the CMC, the mixtures form precipitate. At higher concentration, the mixtures form homogeneous solution again. When the mixtures form homogeneous solution at high concentration, surface tension increases with concentration, then becomes constant. So the γ‐lgC curve exhibits the second platform. The surface tension at the second platform increases by increasing molar ratio of two surfactants and polar group size of surfactants, and decreases with adding inorganic salts.     

Inspiration from Old Dyes: Tris(stilbene) Compounds as Potent Gram‐Positive Antibacterial Agents

Herein we describe the preparation and structure‐activity relationship studies on range of stilbene based compounds and their antibacterial activity. Two related compounds, each bearing carboxylic acid moieties, exhibit good activity against several bacterial strains, including methicillin‐resistant Staphylococcus aureus MRSA (ATCC 33592 and NCTC 10442). Compound 10 was most active against Moraxella catarrhalis with minimum inhibitory concentrations (MICs) of 0.12–0.25 μg mL^?1 and against Staphylococcus spp. with MICs ranging from 2–4 μg mL^?1. The derivative 17 showed increased activity with MICs of 0.06–0.25 μg mL^?1 against M. catarrhalis and 0.12–1 against Staphylococcus spp. This level of activity is similar to that reported for S. aureus for antibiotics, such as vancomycin, with MICs of ≤2.0 μg mL^?1 and clindamycin with MICs of ≤0.5 μg mL^?1. As an indicator of toxicity, 17 was tested for its ability to lyse sheep erythrocytes, and showed low haemolytic activity. Such results highlight the value of tris(stilbene) compounds as antibacterial agents providing suitable properties for further development.     

Inertial focusing of microparticles,bacteria, and blood in serpentine glass channels

Early detection of pathogenic microorganisms is pivotal to diagnosis and prevention of health and safety crises. Standard methods for pathogen detection often rely on lengthy culturing procedures, confirmed by biochemical assays, leading to >24 h for a diagnosis. The main challenge for pathogen detection is their low concentration within complex matrices. Detection of blood-borne pathogens via techniques such as PCR requires an initial positive blood culture and removal of inhibitory blood components, reducing its potential as a diagnostic tool. Among different label-free microfluidic techniques, inertial focusing on microscale channels holds great promise for automation, parallelization, and passive continuous separation of particles and cells. This work presents inertial microfluidic manipulation of small particles and cells (1–10 μm) in curved serpentine glass channels etched at different depths (deep and shallow designs) that can be exploited for (1) bacteria preconcentration from biological samples and (2) bacteria-blood cell separation. In our shallow device, the ability to focus Escherichia coli into the channel side streams with high recovery (89% at 2.2× preconcentration factor) could be applied for bacteria preconcentration in urine for diagnosis of urinary tract infections. Relying on differential equilibrium positions of red blood cells and E. coli inside the deep device, 97% red blood cells were depleted from 1:50 diluted blood with 54% E. coli recovered at a throughput of 0.7 mL/min. Parallelization of such devices could process relevant volumes of 7 mL whole blood in 10 min, allowing faster sample preparation for downstream molecular diagnostics of bacteria present in bloodstream.     

Preparation of ureido group bearing polymers and their upper critical solution temperature in water

Poly(2‐ureidoethylmethacrylate) (PUEM_n) was synthesized via reversible addition‐fragmentation chain transfer (RAFT) radical polymerization and following polymer reaction. We prepared two PUEM_n samples with different degrees of polymerization (n = 100 and 49). The polymers exhibited upper critical solution temperature (UCST) in phosphate‐buffered saline (PBS) solution. The phase separation temperature (T_p) in PBS can be controlled ranging from 17 to 55 °C by changing molecular weight of the polymer, polymer concentration, and adding NaCl concentration. The polymers in PBS formed coacervate drops by liquid–liquid phase separations below T_p. Results of the dielectric relaxation measurement, the hydration number per monomeric unit was 5 above T_p. Based on a fluorescence study, the polymer formed slightly hydrophobic environments below T_p. The liquid–liquid phase separation was occurred presumably because of weak hydrophobic interactions and intermolecularly hydrogen bonding interactions between the pendant ureido groups. © 2016 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2016 , 54, 2845–2854     

Ultra-fast Cycling for Multiplexed Cellular Fluorescence Imaging

Rapid analysis of single and scant cell populations is essential in modern diagnostics, yet existing methods are often limited and slow. Herein, we describe an ultra-fast, highly efficient cycling method for the analysis of single cells based on unique linkers for tetrazine (Tz)/trans-cyclooctene (TCO)-mediated quenching. Surprisingly, the quenching reaction rates were more than 3 orders of magnitude faster (t_1/2 <1 s) than predicted. This allowed multi-cycle staining and immune cell profiling within an hour, leveraging the accelerated kinetics to open new diagnostic possibilities for rapid cellular analyses.     

A 2D reversed-phase × ion-pair reversed-phase HPLC-MALDI TOF/TOF-MS approach for shotgun proteome analysis

The separation of complex peptide mixtures in shotgun proteome analysis using a 2D separation scheme encompassing reversed-phase × ion-pair reversed-phase (IP-RP) liquid chromatography coupled online to electrospray ion trap mass spectrometry (MS) has been shown earlier to be superior in terms of separation efficiency and technical robustness compared to the classically used separation scheme encompassing strong cation exchange × IP-RP-chromatography in shotgun proteome analysis. In the present study, this novel separation scheme was coupled offline to matrix-assisted laser desorption/ionization (MALDI) time-of-flight (TOF)/TOF-MS for the analysis of the same sample, a tryptic digest of the cytosolic proteome of the bacterium Corynebacterium glutamicum. Compared to the earlier study, the MALDI-based platform led to a significantly increased number of peptides (7,416 vs. 2,709) and proteins (1,208 vs. 468, without single peptide-based identifications), respectively. This represents the majority of all predicted cytosolic proteins in C. glutamicum. The high proteome coverage, as well as the large number of low-abundant proteins identified with this improved analytical platform, pave the way for new biological studies. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Ultra‐fast Cycling for Multiplexed Cellular Fluorescence Imaging

Rapid analysis of single and scant cell populations is essential in modern diagnostics, yet existing methods are often limited and slow. Herein, we describe an ultra‐fast, highly efficient cycling method for the analysis of single cells based on unique linkers for tetrazine (Tz)/trans‐cyclooctene (TCO)‐mediated quenching. Surprisingly, the quenching reaction rates were more than 3 orders of magnitude faster (t_1/2 <1 s) than predicted. This allowed multi‐cycle staining and immune cell profiling within an hour, leveraging the accelerated kinetics to open new diagnostic possibilities for rapid cellular analyses.     

Rare‐Cell Enrichment by a Rapid,Label‐Free,Ultrasonic Isopycnic Technique for Medical Diagnostics

One significant challenge in medical diagnostics lies in the development of label‐free methods to separate different cells within complex biological samples. Here we demonstrate a generic, low‐power ultrasonic separation technique, able to enrich different cell types based upon their physical properties. For malaria, we differentiate between infected and non‐infected red blood cells in a fingerprick‐sized drop of blood. We are able to achieve an enrichment of circulating cells infected by the ring stage of the parasite over nonparasitized red blood cells by between two and three orders of magnitude in less than 3 seconds (enabling detection at parasitemia levels as low as 0.0005 %). In a second example, we also show that our methods can be used to enrich different cell types, concentrating Trypanosoma in blood at very low levels of infection, on disposable, low‐cost chips.     

Rare‐Cell Enrichment by a Rapid,Label‐Free,Ultrasonic Isopycnic Technique for Medical Diagnostics

One significant challenge in medical diagnostics lies in the development of label‐free methods to separate different cells within complex biological samples. Here we demonstrate a generic, low‐power ultrasonic separation technique, able to enrich different cell types based upon their physical properties. For malaria, we differentiate between infected and non‐infected red blood cells in a fingerprick‐sized drop of blood. We are able to achieve an enrichment of circulating cells infected by the ring stage of the parasite over nonparasitized red blood cells by between two and three orders of magnitude in less than 3 seconds (enabling detection at parasitemia levels as low as 0.0005 %). In a second example, we also show that our methods can be used to enrich different cell types, concentrating Trypanosoma in blood at very low levels of infection, on disposable, low‐cost chips.     

Viscoelastic properties and phase behavior of 12‐tert‐butyl ester dendrimer/poly(methyl methacrylate) blends

This study used refractometry, ultraviolet–visible spectroscopy, Fourier transform infrared spectroscopy, differential scanning calorimetry, and dielectric analysis to assess the viscoelastic properties and phase behavior of blends containing 0–20% (w/w) 12‐tert‐butyl ester dendrimer in poly(methyl methacrylate) (PMMA). Dendritic blends were miscible up through 12%, exhibiting an intermediate glass‐transition temperature (T_g; α) between those of the two pure components. Interactions of PMMA C?O groups and dendrimer N? H groups contributed to miscibility. T_g decreased with increasing dendrimer content before phase separation. The dendrimer exhibited phase separation at 15%, as revealed by Rayleigh scattering in ultraviolet–visible spectra and the emergence of a second T_g in dielectric studies. Before phase separation, clear, secondary β relaxations for PMMA were observed at low frequencies via dielectric analysis. Apparent activation energies were obtained through Arrhenius characterization. A merged αβ process for PMMA occurred at higher frequencies and temperatures in the blends. Dielectric data for the phase‐separated dendrimer relaxation (α_D) in the 20% blend conformed to Williams–Landel–Ferry behavior, which allowed the calculation of the apparent activation energy. The α_D relaxation data, analyzed both before and after treatment with the electric modulus, compared well with neat dendrimer data, which confirmed that this relaxation was due to an isolated dendrimer phase. © 2001 John Wiley & Sons, Inc. J Polym Sci Part B: Polym Phys 39: 1381–1393, 2001     

The MTXαR method. The determination and use of “molecular” α values in molecular multiple scattering Xα calculations

A semiempirical approach is used to fix the α value for use in the extraatomic regions in multiple-scattering (MS Xα) calculations which retain the muffin-tin treatment of the potential. Such a “molecular” α value for an atom is determined by requiring the corresponding homonuclear diatomic molecule to have its minimum at the experimentally determined equilibrium separation; hence they are called α _R. Molecular α _R values are determined for the ground state Li₂ and F₂ molecules and are tested in a calculation of the ground state LiF potential curve. We find a binding energy at the calculated equilibrium separation to be within 1% of the experimental value. The LiF curve based entirely on the ordinary atomic α values is substantially inferior. The present MT Xα _R approach appears to be competitive with others which are intended to improve the muffin-tin version of MS Xα calculations.     

Capability of Urine Analysis for the Disease Blastomycosis Using Infrared Spectroscopy with Eigenvector Signal to Noise Assessment

ABSTRACT

Blastomyces dermatitidis is the etiological agent of the relatively common disease blastomycosis found in certain regions of the United States. In order to discern the presence of blastomycosis, microorganisms present in biofluids of infected individuals must be incubated and cultured and then identified by microscopic observation. This procedure is time consuming due to difficult incubation conditions and necessitates special safeguards. An enzyme-linked immunosorbent assay (ELISA) was developed in an attempt to quicken diagnosis. The immunological assay, however, also requires incubations as well as special reagents. This paper explores the potential of using infrared spectroscopy for determination of blastomycosis in urine samples from infected dogs. The regression methods of principal component regression (PCR) and partial least squares (PLS) are used to develop models. Recently introduced regression diagnostics in conjunction with new diagnostic tools described in this paper are used to determine final models. One of the new tools allows for an estimate of the signal (information) to noise ratio, i.e., reliability, for each eigenvector's contribution to the model. Based on diagnostic information, it is concluded that PCR and PLS are generating the same models.     

Studies of molecular relaxation of poly(propylene oxide) solutions by dielectric relaxation and brillouin scattering

Dielectric relaxation and Brillouin scattering are jointly used in studying molecular relaxation in poly(propylene oxide) (PPO) and its solutions in methylcyclohexane. The dielectric method was applied to the more concentrated (100%, 80%, 60%, by volume) solutions over a wide temperature and frequency range (30 Hz to 8 GHz) in order that the variation in activation energy characteristic of a glass-forming substance could be delineated. The present work extends previous work on the undiluted polymer to higher frequencies so that range of 12 decades in the dielectric loss maximum f_max as a function of temperature is now available. The “Antoine” equation is found to represent the behavior of log f_max, of the bulk concentrated solutions very well. The more dilute (40%, 20%) solutions were studied only in the high-frequency (GHz) region since phase separation occurred at low temperatures. Both the temperature and dilution effects were interpreted in terms of free-volume theory. Brillouin scattering spectra were obtained at several scattering angles and a wide range of temperatures. A maximum in the curve of hypersonic attenuation versus temperature was observed in each polymer solution. The attenuation maximum shifts toward lower temperature upon dilution, in agreement with the dielectric relaxation result. The Brillouin scattering follows different activation parameters and evidences a more rapid process than does the dielectric relaxation. It is speculated that it monitors a secondary or subglass relaxation, due perhaps, to damped torsional oscillations.     

Synergistic and antagonistic effects of Citrus bergamia distilled extract and its major components on drug resistant clinical isolates

Abstract

In this study we determine the in vitro antimicrobial activities of Citrus bergamia distilled extract and compounds isolated from such extract against clinical MDR strains. The activity of these substances were tested using a broth microdilution assay, their MBC and their FBC to evaluate the nature of the interactions in tested components. Among Gram negative bacteria Enterobacter spp, Klebsiella spp and Pseudomonas spp exhibited the higher MBC values range (2.5–5% v/v). Among Gram positive and Yeast isolates, Corynebacterium spp, Enterococcus faecalis and Staphylococcus spp, as well as Candida lipolytica and lusitanae showed a range of 2.5 to >5% of MBC. To overcome such resistance toward the distilled extract, were used combination of isolated compounds from the same extract. Klebsiella pneumoniae 16/15 and Pseudomonas aeruginosa 7/15 were sensitive to synergistic effect of some tested combinations. Broad spectrum of antimicrobial activity was demonstrated for C. bergamia components and their combinations.     

Load separation principle in determination of J-R curve for ductile polymers: Suitability of different material deformation functions used in the normalization method

The load separation principle states that the load, P, can be represented as the multiplication of two independent functions: A crack geometry function, G(a), and a material deformation function, H(v). The principle constitutes the theoretical basis for the single-specimen J-integral experiment and the incremental calculation of J-integral crack growth resistance (J-R) curves. The normalization method is a new method, which assumes load separation and uses characteristic deformation properties of materials to relate load, displacement and crack length in a functional form. From the deformation material function or “material key curve”, J-R curve can be developed from a single precracking experiment. This investigation deals with the applicability of the load separation criterion to evaluation of ductile fracture mechanics parameters in rubber-modified polystyrene, polypropylene, rubber-modified PMMA, ABS resin and high-density polyethylene in the bending configuration. Different mathematical relationships for the deformation function (power law function, LMN function and combined power law straight line relationship) have been proposed and compared. The resulting J-R curves are in good agreement with those obtained by the traditional multiple-specimen technique. The results presented here imply that the use of a single load-displacement method for evaluation of J-integrals for ductile polymers is possible and hence also the normalization method can be used for evaluation of J-R curves from a single-test record.     

Rapid separation and characterization of diterpenoid alkaloids in processed roots of Aconitum carmichaeli using ultra high performance liquid chromatography coupled with hybrid linear ion trap‐Orbitrap tandem mass spectrometry

The lateral root of Aconitum carmichaeli, a popular traditional Chinese medicine, has been widely used to treat rheumatic diseases. For decades, diterpenoid alkaloids have dominated the phytochemical and biomedical research on this plant. In this study, a rapid and sensitive method based on ultra high performance liquid chromatography coupled with linear ion trap‐Orbitrap tandem mass spectrometry was developed to characterize the diterpenoid alkaloids in Aconitum carmichaeli. Based on an optimized chromatographic condition, more than 120 diterpenoid alkaloids were separated with good resolution. Using a systematic strategy that combines high resolution separation, highly accurate mass measurements and a good understanding of the diagnostic fragment‐based fragmentation patterns, these diterpenoid alkaloids were identified or tentatively identified. The identification of these chemicals provided essential data for further phytochemical studies and toxicity research of Aconitum carmichaeli. Moreover, the ultra high performance liquid chromatography with linear ion trap‐Orbitrap mass spectrometry platform was an effective and accurate tool for rapid qualitative analysis of secondary metabolite productions from natural resources.     

Dynamic mechanical and dielectric properties of epoxidized SBS triblock copolymer

The morphological and dynamic properties of epoxidized styrene–butadiene–styrene block copolymers were studied and compared with their parent styrene–butadiene–styrene block copolymer (SBS). Two peaks were observed in the mechanical loss (tan δ) curve which can be attributed to segmental motion of epoxidized polybutadiene (EPPB) and polystyrene. Analysis by DSC thermograms also showed the linear increase of glass transition temperature for EPPB domain with the epoxy group content. Phase separated structures of epoxidized SBS as observed by TEM suggests a considerable degree of mixing occurred between phases after 80 mol % of the double bonds in SBS were epoxidized. The interfacial region displays a third peak and causes much steeper drop in modulus at higher temperature than T_g of EPPB. Parallel dielectric relaxation measurements were also made in the frequency range of 30 Hz–1 KHz as a function of temperature. In each dielectric constant (?′) curve, there is a maximum near the T_g of EPPB determined from the dielectric loss tangent curve. The shift in T_g of EPPB versus epoxy group content was consistent with that measured by the thermal and dynamic mechanic analysis. These findings indicated an 8°C shift in glass transition temperature as the epoxy group content in EPPB increased 10%.     

A High Dielectric N‐Type Small Molecular Acceptor Containing Oligoethyleneglycol Side‐Chains for Organic Solar Cells

We report a new small molecular acceptor, ITIC‐OEG, which is based on indacenodithieno[3,2‐b]thiophene and 1,1‐(dicyanomethylene)‐3‐ indanone including oligoethyleneglycol (OEG) side‐chains. ITIC‐OEG was found to have higher dielectric constant (ε_r=5.6) than that of a reference molecule of ITIC with normal alkyl substituents (ε_r=3.9). The dielectric constant of medium influences significantly the exciton binding energy and the resulting charge separation and recombination. The optical, electrochemical and morphological properties of ITIC‐OEG and its photovoltaic characteristics were investigated by blending with a semi‐crystalline donor polymer, PPDT2FBT, with comparison to those of ITIC. ITIC‐OEG shows more red‐shifted absorption and stronger crystalline packing than ITIC. However, the lower photovoltaic performance (with 1.58% power conversion efficiency, PCE) was measured for PPDT2FBT:ITIC‐OEG, compared to PPDT2FBT:ITIC (5.52% PCE). The incompatibility between PPDT2FBT and ITIC‐OEG (due to high hydrophilic nature of OEG chains) resulted in poor intermixing with large domain separation over 300 nm, showing inefficient charge separation and significant charge recombination. Therefore, to investigate the effect of dielectric constant of the materials on the charge separation and recombination, the blend morphology of the PPDT2FBT:ITIC‐OEG should be optimized first by improving their miscibility and phase separation.