Synthesis and crystal structures of complexes of Ni (II) to chiral Schiff bases of (R)- and (S)-serine with (S)- and (R)-2-N-(N′-benzylprolyl)-aminobenzophenone

The three-dimensional molecular and crystal structures of a pair of enantiopure mirror complexes of Ni (II) to chiral Schiff bases of (R)- and (S)-serine with (S)- and (R)-2-N-(N′-benzylprolyl)-aminobenzophenone (BPB), denoted as (S,R)-BPB-Ser-Ni and (R,S)-BPB-Ser-Ni, respectively, have been determined by X-ray diffraction. The complexes crystallize in the orthorhombic space group P2 ₁ 2 ₁ 2 ₁ with unit cell parameters: a = 10.050(2) Å, b = 10.100(2) Å, c = 26.514(5) Å, V = 2691.3(9) ų, and Z = 4 for (S,R)-BPB-Ser-Ni; and a = 9.878(2) Å, b = 10.130(2) Å, c = 26.304(5) Å, V = 2632.1(9) ų, and Z = 4 for (R,S)-BPB-Ser-Ni. The Ni atom is square-planar-coordinated to N(1), N(2), O(4), and N(3) of the Schiff base with minor distortion. The hydroxymethyl group on the serine moiety is axial to the coordination plane and parallel to the neighboring phenyl group.     

Absolute structure of (11E, 1S, 3S, 4R, 7S, 8R, 14S)-3,7-diiodo-4,8-epoxy-euniolide

3,7-Diiodo-4,8-epoxy-euniolide (2) was synthesized from euniolide (1) by the addition reaction of iodine in the presence of triphenylphosphine in CH₂Cl₂. The absolute structure of 2 was unambiguously determined by a combination of ¹H and ¹³C NMR, HREI mass spectroscopy, and x-ray single crystal analysis as (11E, 1S, 3S, 4R, 7S, 8R, 14S)-3,7-diiodo-4,8-epoxy-cembra-11,15-dien-16,14-olide. X-ray crystallographic data for 2: Orthorhombic P2₁2₁2₁ (#19), a = 10.9688(7), b = 11.3909(8), c = 16.885(1) Å, _calcd = 1.795 g cm^–3, and for Z = 4.     

Crystal structure of the keto-enamine form of (+) (1S,2S)-2-(2-hydroxybenzylidene)amine-1-phenyl-1,3-propanediol

The title compound crystallizes in the orthorhombic space group P2₁2₁2₁, withZ=4,a=6.068(1)Å,b=10.922(1)Å, andc=21.713(2)Å. The compound is the chiral ligand of a copper complex used as an enantioselective catalyst. It crystallizes from methanol in the keto-enamine form, though the enol-imine isomer predominates in the solution. Most N-salicylideneamines studied by X-ray are enol-imines. The two tautomeric forms may interchange through anintramolecular hydrogen bond and the distances between non-H atoms in the resulting cyclic –O–H...N=C–C=C- or –C=O...H–N–C=C- fragment may be misleading, so that H atom position is the crucial factor for determination of the proper tautomeric form.     

Crystal structure of [Mn2(III)(salpa)2Cl2(H2O)2] (H2salpa = 1-(salicylaldeneamino)-3-hydroxypropane)

The manganese complex, (Mn₂(III)(salpa)₂Cl₂(H₂O)₂], has been prepared and its structure determined using x-ray crystallography. The dimer is a di-₂-alkoxo complex which is a six-coordinate manganese dimer with unsupported alkoxide bridges and a rare example of a chloride- and water-containing manganese dimer. The complex crystallizes in the monoclinic space group P2₁/c with a = 9.315(5), b = 11.130(4), c = 11.637(5) Å, = 104.33(3)°, V = 1169.0(9) ų, and Z = 2. The structure comprises discrete binuclear clusters in which the metal atoms are bridged by two alkoxo oxygens of the salpa^2– ligands. The Mn—O and Mn—N distances are in good agreement with those found for other manganese(III) Schiff base complexes. The Mn—Cl and Mn—O3 distances are 2.585(2) and 2.371(2) Å, respectively, and the Mn ··· Mn distance is 3.001(1) Å. In the crystal, there are two types of hydrogen bonding between the H₂O molecule and the Cl atom with Cl ··· H(H₂O) distance of 2.33(6) (intramolecule: –1 + x, y, –1 + z) and 2.68(6) Å (intermolecule: –1 + x, 0.5–y, –0.5 + z).     

Intramolecular hydrogen bonding and tautomerism in N-(3-pyridil)-2-oxo-1-naphthylidenemethylamine

N-(3-pyridil)-2-oxo-1-naphthylidenemethylamine (C₁₆H₁₂N₂O) was studied by elemental analysis, IR, ¹H NMR, and UV–visible techniques and X-ray diffraction methods. The UV–visible spectrum of the compound was investigated in solutions effect polarity. The polarity of the some solvents was modifierly the additional (CF₃COOH) and [(C₂H₅)₃N]. The compound is in tautomeric equilibrium (phenol-imine O–H···N and keto-amine O···H–N forms) in polar and nonpolar solvents. The keto-amine form is observed in basic solutions of DMSO, ethanol, chloroform, benzene, cyclohexane, and in acidic solutions of chloroform and benzene, but not in acidic solutions of DMSO and ethanol. The compound crystallizes in the monoclinic, space group P2₁/a with a = 7.010(5) Å, b = 13.669(4) Å, c = 12.764(4) Å, = 101.23(4)°, V = 1199.6(10) ų, Z = 4, D _c = 1.375 g/cm³, (Mo K) = 0.088 mm^–1, R = 0.045 for 1658 reflections [I > 2(I)]. The title compound is not planar two Schiff base moieties A [C1–C11, O1] and B [N1, C12, C13, N2, C14, C15, C16] are inclined at an angle of 27.4(1)° reflecting mainly the twist about C12–N1 [C11–C12–N1–C13, 29.7(2)°]. There is a strong intramolecular hydrogen bond (O–H···N) of 2.529(2) Å.     

Crystal structure, thermal analysis, and IR spectrometric investigation of bis(tert-butylammonium) sulfate

Chemical preparation, X-ray single crystal, thermal analysis, and IR spectrometric investigation of (C₄H₁₂N)₂SO₄, denoted tBAS, are described. The compound crystallizes in the monoclinic system with C2/c space group. Its unit cell dimensions are a = 11.1585(5) Å, b = 6.2148(4) Å, c = 20.070(1) Å, = 102.004(4)°, V = 1361.4(1) ų, and Z = 4. The crystal structure of tBAS can be described as a typical thick layered organization built by all the components of the structure and centered by planes z = 1/4 and 3/4. Connection in these layers are established by N—H···O hydrogen bonds. Thermal analysis shows a reversible weak phase transition.     

Synthesis, spectroscopy, and X-ray structures of fac-(CO)3(dppe)MnSC(S)H, fac-(CO)3(dppe)ReSC(S)H, fac-(CO)3(dppp)ReSC(S)H, and fac-(CO)3(dppb)ReSC(S)H

The monodentate dithioformato complexes, fac-(CO)₃(dppe)MnSC(S)H (1), fac- (CO)₃(dppe)ReSC(S)H (2), fac-(CO)₃(dppp)ReSC(S)H (3), and fac-(CO)₃ (dppb)ReSC(S)H (4), where dppe is 1,2-bis(diphenylphosphino)ethane, dppp is 1,3-bis(diphenylphosphino)propane, and dppb is 1,4-bis(diphenylphosphino)butane, were synthesized from the treatment of the corresponding hydrides, fac-(CO)₃ (P-P)MSC(S)H with CS₂. Compounds 1–4 crystallize in the monoclinic crystal system: for 1, space group = P2₁/c, a = 15.3139(3) Å, b = 9.7297(4) Å, c = 19.0991(6) Å, = 105.928(1), V = 2736.5 ų, Z = 4; for 2, space group = P2₁/c, a = 15.6395(8) Å, b = 9.8182(5) Å, c = 19.4153(11) Å, = 106.741(1), V = 2854.9(3) ų, Z = 4; for 3, space group = P2₁/n, a = 11.3570(10) Å, b = 19.465(2) Å, c = 15.5702(14) Å, = 104.776(2), V = 3328.3(5) ų, Z = 4; and for 4, space group = C2/c, a = 32.078(2) Å, b = 10.4741(6) Å, c = 19.0608(9) Å, = 94.315(2), V = 6386.1(6) ų, Z = 8.     

The preparation, characterization, and X-ray structural analysis of dichlorobis[1-methyl-3-(2-propyl) -2(3H)-imidazolethione]mercury(II)

A new compound of mercury(II) chloride complexed to 1-methyl-3-(2-propyl) -2(3H)-imidazolethione (mipit) has been prepared and characterized via standard methods and X-ray crystallography. The structural significance of this study is that it shows one of the few monomeric examples of a mercury(II) chloride thione complex reported to date. The compound crystallizes in space group P2₁/c with a = 17.143(6) Å, b = 17.047(6) Å, c = 14.759(5) Å, = 105.899(5)°, V = 4148(2) ų, Z = 8. The coordination sphere is distorted tetrahedral with Hg–S bonds and Hg–Cl bond distances falling within the normally expected ranges. Bond angles ranged from 108.11(4)° to 115.51(4)° with the widest angle being observed for the S–Hg–S linkage. Ligand bond distances and angles including the C=S distance are within the normally expected values observed for this compound.     

Crystal structure and conformation of frentizole, [1-(6-methoxy-2-benzothiazolyl)-3-phenylurea, an antiviral agent and an immunosuppressive drug

Crystals of Frentizole (from ethanol/water) are monoclinic, space group P2₁/c, with a = 11.187(4), b = 7.392(2), c = 32.727(6) Å, = 92.77(2)°, Z = 8, D _o = 1.47 g/cm³, and D _c = 1.472 g/cm³. There are two independent molecules in the crystallographic asymmetric unit with very different conformations. In molecule A the urea group is in the plane of the benzothiazole ring (0.9°) whereas in molecule B the dihedral angle between them is 4.4°. The dihedral angle between the planes of the phenyl group and the benzothiazole ring are ±157° and ±12°, respectively, in the two molecules. The molecules are linked by a pair of N–H···N hydrogen bonds involving the urea nitrogen and two other N–H···N bonds involving the urea nitrogen and the nitrogen of the benzothiazole group.     

Crystal structure of 1-(2-hydroxyphenyl)-3-(2-thiomethoxyphenyl)-1,3-propanedione,C16H14O3S

The crystal structure of the enol tautomer of 1-(2-hydroxphenyl)-3-(2-thiomethoxyphenyl)-1,3-propanedione C₁₆H₁₄O₃S, was determined from X-ray crystallography. The finalR value was 5.99% based on 1945 unique observed reflections. The crystals are monoclinic,P2₁/c, witha=7.406(6),b=8.585(6),c=21.992(4) Å,=93.42(2),D _c =1.36 g cm^–3 forz=4. The compound is present in the solid state as a unique enol tautomer.There are two short, intramolecular OO contacts of 2.553(4) and 2.577(4) Å. Both the phenol and the enol H atoms are asymmetrically located with respect to the O atoms.     

Unexpected crystallization and X-ray crystal structure of racemic 1-phenyl-2-(4-pyridyl)ethanol intermediate

We have isolated, by crystallization, the intermediate, 1-phenyl-2-(4-pyridyl)ethanol, from the condensation reaction of 4-methylpyridine with benzaldehyde in which the aim was to obtain the model compound 4-styrylpyridine in absence of a condensing agent. Single crystal X-ray analysis shows the formation of an intermolecular hydrogen bond O–H···N between the nitrogen atom of a pyridine group and the oxygen atom of the OH of the neighboring molecule, which helps to stabilize the crystal structure. Crystal structure determination clearly revealed that the solid is chiral and racemic, as expected. The title compound crystallizes in an orthorhombic system with a space group Pna2₁ with two pairs of R and S enantiomers in each crystal cell (a = 15.591(1) Å, b = 12.691(1) Å, and c = 5.589(1) Å). Spectroscopic NMR data gave evidence that the isolated compound is actually the alcohol just before the dehydration process that yields the double bond of the 4-styrylpyridine.     

Synthesis and crystal structure of 1-acetyl-3-bromo-3-phenylazetidine and 1-phenyl-2-(N-acetyl-N-formyl)-aminoethanone

1-Acetyl-3-bromo-3-phenylazetidine (1), C₁₁H₁₂BrNO, has been synthesized and characterized by spectroscopic methods and single crystal X-ray analysis. It crystallizes in the space group P2 ₁/c with a = 8.633(1), b = 7.461(1), c = 17.204(1) Å, = 98.403(7)°, V = 1096.2(2) ų, Z = 4, D _calc = 1.540 g cm^–3. The azetidine ring is nearly planar since the four atoms are within ±0.039(5) Å of the mean square plane calculated for the heterocycle. The attempt to obtain a highly strained 2-azetine derivative from the above compound gave, surprisingly, 1-phenyl-2-(N-acetyl-N-formyl)-aminoethanone (2), C₁₁H₁₁NO₃. This compound has been also characterized by spectroscopic methods and single crystal X-ray analysis. It crystallizes in the space group P2₁2₁2₁, with a = 5.4719(3), b = 8.3205(6), c = 23.298(3) Å, V = 1060.7(2) ų, Z = 4, D _calc = 1.286 g cm^–3. The aminoethanone residue is in a near planar conformation where the torsion angles are 7(2)° for N–C–C–=O and –173(2)° for N–C–C–C(Ph).     

X-ray diffraction and total 1H and 13C NMR assignment of (RS)-5,6-dihydro-7,8-dimethoxy-5-methyl-6-(2-oxopropyl)-(2,3-methylenedioxyphenyl)-[c]-phenanthridine ((RS)-6-acetonyldihydrochelerythrine)

The X-ray diffraction structure of (RS)-5,6-dihydro-7,8-dimethoxy-5-methyl-6-(2-oxopropyl)-(2,3-methylenedioxyphenyl)-[c]-phenanthridine ((RS)-6-acetonyldihydrochelerythrine), isolated as an artifact from Bocconia Arborea, is reported. This compound crystallizes as orthorhombic system, space group Pna2₁, with a = 13.216(2) Å, b = 7.6547(10) Å, c = 20.096(3) Å. The phenanthridine central ring presents a distorted boat conformation, which gives rise to two planes with 21.30° between them. The acetonyl group at the six position forms weak C — H O and C — H -ring interactions. The title compound was completely characterized in solution by ¹H and ¹³C and 2D NMR experiments.     

Structure of 2-{2-[3-methyl-3-(2,4,6-trimethylphenyl) cyclobutyl]-2-oxoethyl}isoindole-1,3-dione

2-{2-[3-Methyl-3-(2,4,6-trimethylphenyl)cyclobutyl]-2-oxoethyl}isoindole-1,3-dione (C₂₄ H₂₅NO₃) was synthesized, and its crystal structure was determined by X-ray crystallographic techniques. The compound crystallizes in the triclinic space group P-1, with unit cell parameters: a = 14.109(9) Å, b = 14.130(8) Å, c = 12.152(6) Å, = 105.62(5)°, = 113.75(4)°, = 98.78(5)°, V = 2039.8(19) ų, D _c= 1.223 g/cm³, and Z = 4. The crystal structure has two crystallographically independent molecules, I and II. These molecules are held together by weak intermolecular C—H···O interactions, forming a continuous chain. The dihedral angles between the N-substituted phthalimide moiety and cyclobutane ring in molecules I and II are 60.37(14) and 68.18(18)°, respectively.     

Intramolecular hydrogen bonding and tautomerism in 1-[N-(4-bromophenyl)]aminomethylidene-2(1H) naphthalenone

1-[N-(4-bromophenyl)]aminomethylidene-2(1H)naphthalenone (C₁₇H₁₂NOBr) (1) was synthesized and its crystal structure was determined. Compound (1) is monoclinic, space group P2₁/n with a = 4.808(1) Å, b = 20.617(1) Å, c = 13.750(1) Å, = 93.004(1)°, V = 1361.11(3) ų, Z = 4, D_c = 1.592 g·cm^–3, (Mo K) = 3.014 mm^–1, R = 0.051 for 1013 reflections [I > 2(I)]. There is a strong intramolecular hydrogen bond of distance 2.544(2) Å between the hydroxyl oxygen atom and imine nitrogen atom, the hydrogen atom essentially being bonded to the nitrogen atom. The title molecule is not planar. X-ray crystal structure determination reveals the existence of the keto (or predominantly keto) tautomer in (1). Spectra of compound (1) were observed by IR and NMR, and UV–visible spectra of (1) were studied in different solvents and acidic media.     

Synthesis and crystal structure of two vanadium(V) hydroxylamido complexes with amino acid ligands

Two vanadium(V) hydroxylamido complexes with amino acid ligands including Alanine, [VO(NH₂O)₂(Ala)]·2H₂O, and Threonine, VO(NH₂O)₂(Thr), were synthesized and characterized by elemental analyses, IR spectrum, and single crystal X-ray diffraction. The two complexes are seven-coordinated with four nitrogen atoms and three oxygen atoms in pentagonal bipyramidal geometry. The different hydrogen bonds (N–H···O, O–H···O) observed in the two complexes result in the two-dimensional network structure. [VO(NH₂O)₂(Ala)]·2H₂O belongs to monoclinic: space group P2(1)/c, with a = 21.874(13) Å, b = 8.874(5) Å, c = 15.865(9) Å, = 100.423(8)°, V = 3029(3) ų, Z = 12, D _c = 1.678 g/cm³, (MoK) = 1.002 mm^–1, F (000) = 1584, and final R ₁ = 0.0375, wR ₂ = 0.0886 for observed reflections 1189 (IT > I> 2(I)). VO(NH₂O)₂(Thr) is rhombohedral: space group R-3, with a = 21.460(16) Å, b = 21.460(16) Å, c = 11.184(12) Å, = 120°, V = 4461(7) ų, Z = 18, D _c = 1.669 g/cm³, (MoK) = 1.012 mm^–1, F(000) = 2304, and final R ₁ = 0.0356, wR ₂ = 0.0924 for observed reflections 1306 (I > 2(I)).     

Hydrogen bonding in thiourea: diethyl oxalate complex in 2:1 ratio

The crystal structure of thiourea:diethyl oxalate in 2:1 ratio is the first of its kind where the diethyl oxalate exists as a solid which otherwise is a liquid at room temperature. It crystallizes in triclinic centrosymmetric space group P-1 with the following unit cell dimensions a = 7.1870(7) Å, b = 7.4890(8) Å, c = 8.3637(7) Å, α = 63.783(7)^∘, β = 67.41(1)^∘, γ = 64.933(7)^∘. The R-factor = 0.0386 for 1850 F_o > 4σ (F_o) and 0.0417 for all 2020 data. There is a center of inversion at the center of the C–C bond of diethyl oxalate. This system is stabilized by N–H ⋅s S and N–H ⋅s O hydrogen bonds.     

syn,E-1-cyclopentano-4-ethyl-3-thiosemicarbazone and syn,E-1-cyclopentano-4-phenyl-3-thiosemicarbazone

The structures of two thiosemicarbazones are described: syn,E-1-cyclopentano-4-ethyl-3-thiosemicarbazone (1) and syn,E-1-cyclopentano-4-phenyl-3-thiosemicarbazone (2). Crystal data: for 1: tetragonal, P4₃ (#78), a = b = 8.922(7) Å, c = 12.899(13) Å, and Z = 4; for 2: monoclinic a = 15.163(18) Å, b = 7.482(5) Å, c = 12.467(15) Å, = 119.04(7)°, and Z = 4. In 1, molecules are linked by hydrogen-bonding into infinite chains with non-planar 9-ring subunits in which thioamides interact with the H—N—C—N—N groups of neighbors. Thioamide groups in 2 form dimers linked by N—B···HS hydrogen-bonds with a planar 8-ring as in solid state structures of carboxylic acids. The semicarbazide syn conformation fosters formation of N—H···N intramolecular hydrogen-bonding in each structure. The solid state structures are consistent with their infrared and proton nuclear magnetic resonance spectra.     

Synthesis and X-ray analysis of 1-((1S)-phenylethyl)-azetidine-(2R)-piperidinamide

The crystal and molecular structure of a new azetidine-2-carboxylic amide derivative is described. The structure was solved by direct methods and refined by least squares methods toR1=0.0393 for 4264 reflections (withI>2(I)) The structure consists of two independent molecules which are chemically the same with slight differences in geometry. Crystal data: C₁₇H₂₄N₂O, monoclinic, space groupP2₁,a=8.3782(4),b=20.0342(13),c=9.7769(8) Å, =109.687(6)°,V=1545.1(2)ų,Z=4.     

Molecular structure of PhOCH2CH(OH)CH2OPh

The molecular structure of PhOCH₂CH(OH)CH₂OPh has been determined. The C—O—C—C—C—O—C backbone adopts an anti-anti-anti-anti conformation. Inter-molecular O—H ··· O hydrogen-bonding results in dimeric units which stack into zig-zag tapes. Crystal data: orthorhombic, Pbca, a = 10.383(1), b = 8.0532(0), c = 31.295(3) Å, V = 2616.8(3) ų, and Z = 8.