An ab initio study on boundaries for characterizing cooperative effect of hydrogen bonds by intermolecular compression

The cooperative effect plays a significant role in understanding the intermolecular donor-acceptor interactions of hydrogen bonds (H-bonds, D-H···A). Here, using the coupled-cluster singles and doubles with perturbative triple excitations (CCSD(T)) method of high-precision ab initio calculations, we show that the intermolecular H-bonded systems with different D and A atoms reproduce the structural changes predicted by the well-known cooperative effect upon intermolecular compression. That is, with decreasing intermolecular distance, the D-H bond length first increases and then decreases, while the H···A distance decreases. On the contrary, when D and A are the same, as the intermolecular distance decreases, the D-H bond length decreases without increasing. This obvious difference means that the cooperative effect may not be generally characterized by intermolecular compression. Interestingly, further analyses of many intermolecular systems confirm that this failure has boundaries, i.e., cooperative systems at their respective equilibrium positions have a smaller core-valence bifurcation (CVB) index (<0.022) and stronger binding energies (>0.25 eV), showing a clear linear inverse relationship related to H-bond strength. These findings provide an important reference for the comprehensive understanding of H-bonds and its calculation methods.     

The effect of hydrogen bonding on the physical and mechanical properties of rigid‐rod polymers

The idea of competing effects between intramolecular and intermolecular hydrogen bonding was investigated. Results indicate that the formation of one type of hydrogen bond does not preclude the formation of the other. The strength of the intermolecular association was measured by ab initio calculations for several polymer systems, including methyl pendant poly(p‐phenylene benzobisimidazole) and poly‐{2,6‐diimidazo[4,5‐b:4′5′‐e]pyridinylene‐1,4(2,5‐dihydroxy)phenylene} (PIPD). Fibers with strong intermolecular association have high compressive strength and torsional modulus. The influence of intermolecular hydrogen bonding on torsional modulus is discussed in light of the transverse texture present in poly(p‐phenylene terephthalamide) and some other high‐performance fibers. Enhanced intermolecular interaction not only influences the aforementioned properties but also results in higher fiber density. © 2000 John Wiley & Sons, Inc. J Polym Sci B: Polym Phys 38: 3053–3061, 2000     

Metal-catalyzed alkyne oxidation/C?H functionalization: Effects of oxidant,temperature, and metal catalyst on chemoselectivity

Gold-catalyzed intermolecular alkyne oxidation has attracted much synthetic attention, but mostly suffering undesired over-oxidation. Recent experiments demonstrated that over-oxidation could be dramatically suppressed in zinc(II)-catalyzed intermolecular alkyne oxidation/C H functionalization. By means of first-principle density functional theory calculations, we explored the mechanism of the M-catalyzed intermolecular alkyne oxidations (M = Zn(OTf)₂ and Au⁺PR₃) as well as the effects of oxidants, temperature, and metal catalysts on chemoselectivity, in an effort to disclose the origin of the extraordinary chemoselectivity pertaining to zinc catalysis. Our calculations indicate that the Zn-catalyzed intermolecular alkyne oxidation/C H functionalization proceeds by a Friedel–Crafts alkylation mechanism rather than metal carbene insertion mechanism. The chemoselectivity of C H functionalization against over-oxidation in Zn catalysis, in comparison with gold catalysis, can be jointly controlled by four factors: (1) the use of less nucleophilic N-oxide, (2) the enhanced electrophilicity and carbocationic nature of the carbenic site in the α-oxo metal carbenoid intermediate, (3) enhanced steric repulsion to incoming oxidant exerted by bulky ancillary ligand in the close nearby of the carbenic site to disfavor intermolecular over-oxidation and (4) the large negative value of activation entropy in the intermolecular over-oxidation pathway, that jointly give rise to lower activation free energy for the intramolecular cyclization/C H functionalization pathway than for the intermolecular over-oxidation pathway. © 2018 Wiley Periodicals, Inc.     

The effect of intermolecular actions on the nematic phase range of tolane-liquid crystals

An approach to understand the effect of intermolecular actions on the nematic stability, a series of tolane compounds nH containing intermolecular π–π stacking, dipole–dipole and hydrogen bond interactions, are developed and investigated. Their mesophase behaviour were measured by differential scanning calorimetry (DSC) and polarising optical microscopy (POM), the results show that carboxylic acids nH exhibit high melting points and narrow nematic phase intervals, which are attributed to the too strong intermolecular actions. By disrupting the intermolecular hydrogen bond, their corresponding methyl esters nC have been designed and synthesised. It is interesting to note that these compounds exhibit broad nematic mesophase intervals and low melting points. The above results demonstrate that the interruption of intermolecular actions is an effective way to improve the nematic stability. In addition, the effects of the terminal alkyl chains and the terminal polar groups on the nematic stability were also discussed. Finally, DFT calculations of molecular conformation and dipole moment were conducted to better understanding of the molecular structure–mesomorphic property relationship.     

基于分子间侧向氢键作用的电光材料制备及性能

通过重氮耦合和酯化等反应制备了一系列侧向含有酰胺基团的偶氮苯类非线性光学生色团, 并将其与聚合物进行掺杂或通过分子间的侧向氢键作用制备了主客体型及超分子型的电光薄膜材料. 生色团的结构通过核磁共振谱(¹H NMR, NMR)、 红外光谱(IR)、 质谱(MS)和元素分析(EA)等进行了表征, 结果表明, 生色团形成了分子间的氢键作用. 通过紫外-可见(UV-Vis) 光谱研究了材料的极化性能. 相比主客体型电光薄膜材料, 由分子间侧向氢键作用形成的超分子型电光薄膜材料无需与聚合物基体材料复合, 更有利于提高材料的生色团含量、 极化取向度及稳定性. 通过Teng-Man简单反射法研究了主客体型和超分子型电光材料的二阶非线性光学性质, 结果表明, 基于分子间侧向氢键作用形成的超分子体系具有更大的电光系数.     

The effect of basis set superposition error on the convergence of interaction energies

 For the intermolecular interaction energies of ion-water clusters [OH⁻(H₂O) _n (n=1,2), F⁻(H₂O), Cl⁻(H₂O), H₃O⁺(H₂O) _n (n=1,2), and NH₄ ⁺(H₂O) _n (n=1,2)] calculated with correlation-consistent basis sets at MP2, MP4, QCISD(T), and CCSD(T) levels, the basis set superposition error is nearly zero in the complete basis set (CBS) limit. That is, the counterpoise-uncorrected intermolecular interaction energies are nearly equal to the counterpoise-corrected intermolecular interaction energies in the CBS limit. When the basis set is smaller, the counterpoise-uncorrected intermolecular interaction energies are more reliable than the counterpoise-corrected intermolecular interaction energies. The counterpoise-uncorrected intermolecular interaction energies evaluated using the MP2/aug-cc-pVDZ level is reliable. Received: 14 March 2001 / Accepted: 25 April 2001 / Published online: 9 August 2001     

Quantum chemical calculation of exchange interactions in supramolecularly arranged N,N′‐dioxy‐2,6‐diazaadamantane organic biradical

Quantum mechanical exchange effects in purely organic N,N′‐dioxy‐2,6‐diazaadamantane biradical derivatives with promesogenic substituents have been studied. To determine intermolecular exchange energies, packing conditions of the radical core units in layered liquid crystalline phases are simulated using the Gaussian 09 program. The broken symmetry approach gives J ≈ 7 cm^?1 for intramolecular ferromagnetic exchange interactions between nitroxyl radical centers in one molecule. Both ferromagnetic and antiferromagnetic intermolecular interactions are possible in this kind of systems according to the obtained calculation results. Depending on the mutual positioning and orientation of molecules, the intermolecular antiferromagnetic exchange constant can reach a value of ?50 cm^?1, and the intermolecular ferromagnetic constant a value of 10 cm^?1. The simultaneous presence of intramolecular and intermolecular exchange between spin‐carrying centers in this kind of supramolecularly ordered multispin systems is favorable for the formation of magnetically interacting chains and two‐dimensional networks. © 2016 Wiley Periodicals, Inc.     

手持技术数字化实验支持下的抽象化学概念学习*——以探究比较丁醇同分异构体的分子间作用力大小为例

根据TQVC概念认知模型设计手持技术数字化实验,比较丁醇同分异构体的分子间作用力大小,并应用“四重表征”理论对实验结果进行解释与分析。研究发现:蒸发时温度下降速度越快,同分异构体的空间位阻越大,其分子间作用力越小;同分异构体混合液的分子间作用力比任一组分的分子间作用力小。     

Intermolecular interactions and structural dichotomy in 1,3,2,4-benzodithiadiazine crystals

The intermolecular interactions and structural dichotomy in 1,3,2,4-benzodithiadiazine crystals (1) (the heterocycle is planar for one derivative, but bent for another) were studied in terms of topological analysis of electron density (ED) using QTAIM theory and crystal packing modeling in an OPiX approximation. The intermolecular interactions in crystals 1 can be detected and quantified by means of the critical points (CPs) of ED with (3, ?1). The total value of ED at all CPs of a molecule can be correlated with the torsion angle that defines the bending of its heterocycle; the larger the total ED at intermolecular CPs, the smaller the bending of the heterocycle. Thus, under the conditions of weak intermolecular interactions in crystal, molecules 1 preserve the bent conformations typical of the gas phase; strong intermolecular interactions lead to planar conformations.     

Complexation of two macrocycles for amide,saccharide, and halide derivatives: the capacity of 1,2,3-triazole as hydrogen and halogen bonding acceptors

Two 1,2,3-triazole- and amide-incorporated macrocycles have been prepared by 1,3-dipolar cycloaddition of the corresponding dialkyne and diazide precursors. Intramolecular C–H?O hydrogen bonding is introduced to lock the C⁵–H atoms of the 1,2,3-triazole rings. The binding of the two macrocycles to amide, monosaccharide, and halide derivatives in chloroform or dichloromethane has been investigated. It is revealed that the amide units dominate their binding toward the amide and monosaccharide guests through forming intermolecular hydrogen bonding and 1,2,3-triazole is as weak as an intermolecular hydrogen bonding acceptor, but it forms intermolecular halogen bonding when cooperative effect exists.     

Hexa­methyl­enetetra­mine–4‐nitro­catechol–water (1/2/1)

In the title adduct, 1,3,5,7‐tetra­aza­tri­cyclo[3.3.1.1^3,7]dec­ane–4‐nitro­benzene‐1,2‐diol–water (1/2/1), C₆H₁₂N₄·2C₆H₅NO₄·H₂O, the hexa­methyl­ene­tetra­mine mol­ecule acts as an acceptor of intermolecular O—H?N hydrogen‐bonding interactions from the water mol­ecule and the hydroxy groups of one of the two symmetry‐independent 4‐nitro­catechol mol­ecules. The structure is built from molecular layers which are stabilized by three intermolecular O—H?O, two intermolecular O—H?N and four intermolecular C—H?O hydrogen bonds. The layers are further interconnected by one additional intermolecular O—H?N and two intermolecular C—H?O hydrogen bonds.     

Computational study on the ring-opening reaction of protonated oxirane and methylpropene

A computational study on the intermolecular reaction of protonated oxirane with methylpropene, as a model for initiation of oxidosqualene cyclisation, shows that the S_N2-like ring opening is strongly exothermic with a low barrier to reaction and establishes the geometry of the intermolecular reaction.     

Revisiting the electronic excited-state hydrogen bonding dynamics of coumarin chromophore in alcohols: Undoubtedly strengthened not cleaved

In the present work, the electronic excited-state hydrogen bonding dynamics of coumarin chromophore in alcohols is revisited. The time-dependent density functional theory (TDDFT) method has been performed to investigate the intermolecular hydrogen bonding between Coumarin 151 (C151) and methanol (MeOH) solvent in the electronic excited state. Three types of intermolecular hydrogen bonds can be formed in the hydrogen-bonded C151–(MeOH)₃ complex. We have demonstrated again that intermolecular hydrogen bonds between C151 and methanol molecules can be significantly strengthened upon photoexcitation to the electronically excited state of C151 chromophore. Our results are consistent with the intermolecular hydrogen bond strengthening in the electronically excited state of Coumarin 102 in alcoholic solvents, which has been demonstrated for the first time by Zhao et al. At the same time, the electronic excited-state hydrogen bond cleavage mechanism of photoexcited coumarin chromophores in alcohols proposed in some other studies about the hydrogen bonding dynamics is undoubtedly excluded. Hence, we believe that the two contrary dynamic mechanisms for intermolecular hydrogen bonding in electronically excited states of coumarin chromophores in alcohols are clarified here.     

The Effect of Deoxyfluorination on Intermolecular Interactions in the Crystal Structures of 1,6-Anhydro-2,3-epimino-hexopyranoses

The effect of substitution on intermolecular interactions was investigated in a series of 1,6-anhydro-2,3-epimino-hexopyranoses. The study focused on the qualitative evaluation of intermolecular interactions using DFT calculations and the comparison of molecular arrangements in the crystal lattice. Altogether, ten crystal structures were compared, including two structures of C4-deoxygenated, four C4-deoxyfluorinated and four parent epimino pyranoses. It was found that the substitution of the original hydroxy group by hydrogen or fluorine leads to a weakening of the intermolecular interaction by approximately 4 kcal/mol. The strength of the intermolecular interactions was found to be in the following descending order: hydrogen bonding of hydroxy groups, hydrogen bonding of the amino group, interactions with fluorine and weak electrostatic interactions. The intermolecular interactions that involved fluorine atom were rather weak; however, they were often supported by other weak interactions. The fluorine atom was not able to substitute the role of the hydroxy group in molecular packing and the fluorine atoms interacted only weakly with the hydrogen atoms located at electropositive regions of the carbohydrate molecules. However, the fluorine interaction was not restricted to a single molecule but was spread over at least three other molecules. This feature is a base for similar molecule arrangements in the structures of related compounds, as we found for the C4-F_ax and C4-F_eq epimines presented here.     

Mechanisms of photoinduced protolytic interactions of 2,5-diphenyloxazoleortho-hydroxy derivatives in media of various acidities

The mechanism of photoinduced intra- and intermolecular protolytic interactions ofortho-hydroxy derivatives of 2,5-diphenyloxazole in an aqueous alcohol medium was studied over a wide range of acidity from pH ∼13 toH ₀ of ∼−7. The spectral parameters of protolytic forms and equilibrium constants were obtained, and rate constants for the primary photochemical processes (excited-state intra- and intermolecular proton transfer reactions) were evaluated. It was shown that the spectral characteristics of oxazoleortho-hydroxy derivatives in an acidic medium are formed as a result of competition and interchange of intra- and intermolecular protolytic interactions. The phototautomeric form in strongly acidic solutions was found to be produced by dissociation of the cationic form with the protonated oxazole ring.     

N-乙氧羰基-N'-取代芳基硫脲晶体中的弱相互作用及超分子结构研究

合成了3种N-乙氧羰基-N'-取代芳基硫脲并确定了其晶体结构, 晶体结构表明, 在这些化合物中存在分子内及分子间的氢键, 分子间的氢键将化合物1和2组装成了一维链状的超分子结构, 由于空间因素, 化合物3没有形成类似于1, 2中的氢键组装成的链状超分子结构, 而是形成了氢键链接的二聚体. 同时在化合物1, 3中还存在分子间的芳环间的π-π相互作用. 在化合物1的晶体中, 这种π-π相互作用使相邻的超分子链之间相互关联. 化合物3的晶体中, 相邻的二聚体间又通过π-π相互作用连接成了无限延伸的一维链状结构.     

Studies on ferrocene derivatives. Part XIII. Ligand exchange reactions of benzoferrocenes

Reactions between benzoferrocenes and substituted benzenes gave products resulting from intramolecular and intermolecular ligand exchange. The product ratios were influenced by the number of methyl substituents on the benzene ring; the larger the number, the greater the ratio of intermolecular products.     

Study of the intermolecular Overhauser effect {1H}?13C

The intermolecular Overhauser effect {¹H}? ¹³C is studied on two binary systems chloroform/carbon disulfide and chloroform/acetone. Some comments are made concerning the use of these measurements for the study of intermolecular interactions in solution.     

Theoretical analysis of intermolecular covalent pi-pi bonding and magnetic properties of phenalenyl and spiro-biphenalenyl radical pi-dimers

Singlet-triplet splittings DeltaEST and intermolecular covalent pi-pi bonding characteristics of the prototypical phenalenyl pi-dimer and eight spiro-biphenalenyl radical pi-dimer structures are analyzed with the aid of restricted and unrestricted density functional theory calculations and paramagnetic susceptibility data fitted using the Bleaney-Bowers dimer model and the Curie-Weiss model. Single determinant approximations for DeltaEST as a function of transfer integrals and on-site Coulomb repulsion energy are presented for the two-electron two-site pi-dimers of phenalenyls and the two-electron four-site pi-dimers of spiro-biphenalenyl radicals. Within the range of intermolecular separation of 3.12相似文献