Effects of solvent on the maximum charge state and charge state distribution of protein ions produced by electrospray ionization

The effects of solvent composition on both the maximum charge states and charge state distributions of analyte ions formed by electrospray ionization were investigated using a quadrupole mass spectrometer. The charge state distributions of cytochrome c and myoglobin, formed from 47%/50%/3% water/solvent/acetic acid solutions, shift to lower charge (higher m/z) when the 50% solvent fraction is changed from water to methanol, to acetonitrile, to isopropanol. This is also the order of increasing gas-phase basicities of these solvents, although other physical properties of these solvents may also play a role. The effect is relatively small for these solvents, possibly due to their limited concentration inside the electrospray interface. In contrast, the addition of even small amounts of diethylamine (<0.4%) results in dramatic shifts to lower charge, presumably due to preferential proton transfer from the higher charge state ions to diethylamine. These results clearly show that the maximum charge states and charge state distributions of ions formed by electrospray ionization are influenced by solvents that are more volatile than water. Addition of even small amounts of two solvents that are less volatile than water, ethylene glycol and 2-methoxyethanol, also results in preferential deprotonation of higher charge state ions of small peptides, but these solvents actually produce an enhancement in the higher charge state ions for both cytochrome c and myoglobin. For instruments that have capabilities that improve with lower m/z, this effect could be taken advantage of to improve the performance of an analysis.     

Influence of the charge distribution on the stationary phases zeta potential

A set of seven home‐made silica based bonded phases with different functional groups was investigated. Their zeta potential data in methanol and acetonitrile as well as in methanol/water and acetonitrile/water solution were obtained by using a Zetasizer. The influence of polar functional groups on a zeta potential was investigated. The results show that the amines incorporated in the structure of chemically bonded phases of reversed‐phase materials are protonated during chromatographic analysis, resulting in changes of the zeta potential from negative to positive values. Acetonitrile causes more negative values and methanol provides positive (or less negative) values of the zeta potential.     

The influence of the solvent on the conformational energy differences due to the anomeric effect

The solvation free energy ΔG^sol of molecules exhibiting the anomeric effect is computed in an approach that considers a continuous distribution for the solvent. A partition of ΔG^sol into separately evaluated contributions confirms that changes in the energy of the systems due to changes in conformation of the solute are ruled by the electrostatic contribution. A comparison with the “exact” values indicates that the approximate expression for the electrostatic contribution to ΔG^sol are not accurate enough to permit a proper modeling of the solvent influence on the anomeric effect. The systems are composed of methanediol, methoxymethanol, dimethoxymethane, and 2-methoxytetrahydropyran in carbon tetrachloride, chloroform, acetone, and water. The calculations have been performed at the SCF level with the STO -3G and 4–31G basis sets.     

Evidence from x-ray photoelectron spectroscopy on the charge distribution in various chromium compounds

Measurements of various core-level binding energies in the compounds K₃CrF₆, K₃Cr(CN)₆ and Cr(acac)₃ are reported. The binding energies of the L_III level of Cr in these compounds, and in Cr(CO)₆ and K₂CrO₄, are analyzed to yield charge differences between the chromium atom in Cr(acac)₃ and in the other compounds.     

Influence of bromide ions on the synthesis of anomeric thiocyanates

The synthesis of anomeric thiocyanates with the α- and β-configuration is described. Reactions performed under standard conditions afforded the 1,2-trans derivatives as the main products, whereas in the presence of the quaternary ammonium salts, the 1,2-cis-thiocyanates were formed preferentially. The strong influence of the bromide ions on the distribution of the products is discussed.     

Influence of hydrogen bonds on charge distribution and conformation of L-arginine

The molecular recognition of adenosine-5'-triphosphate (ATP) with L-arginine (Arg) through hydrogen bonding interactions has been found using 1H NMR, H-H NOESY, acidity titration and fluorescence spectra techniques. The interactions could influence charge distribution in Arg and induce Arg conformational variation. It is realized that Arg conformation change from a partly folded state to an extended state through the rotation of CC single bonds of Arg side chain during the molecular recognition process.     

Influence of mechanical properties of pectin films on charge density and charge density distribution in pectin macromolecule

The hydration and mechanical properties of citrus pectin films were examined in conditions relevant to those in the plant cell wall. The pectins used for this study varied in the degree of esterification (DE) (high or low) and charge distribution on the backbone (random or block). The hydration of the films was controlled in an osmotic pressure experiment using polyethylene glycol solutions (PEG 20000). Hysteresis tests at constant deformation rate (stress vs deformation) were used for investigating the mechanical behaviour of films. Mechanical and hydration properties of pectin films were examined as a function of charge density, charge density distribution and counterion environment—K⁺, Ca²⁺, Mg²⁺. Swelling decreased with increasing counterion concentration. The effect is stronger in the case of Ca²⁺ and Mg²⁺ for low esterified pectins and therefore crosslinks from divalent ions could be assumed. The crosslink effect is confirmed in mechanical experiments where an increase in the film tensile modulus is observed with increasing counterion concentration. It is shown for the first time that in case of highly concentrated pectin solutions Mg²⁺ cations also act as a crosslinker for pectin macromolecules.     

Influence of the solvent quality on the AhR mediated Procept assay measurement of dioxin and dioxin-like compounds

Polychlorodibenzo-p-dioxins, polychorodibenzofurans and “dioxin-like” polychlorinated biphenyls are widespread persistent organic pollutants sharing a similar toxicological pathway mediated by the aryl-hydrocarbon receptor (AhR). Since the confirmatory method for their measurement at trace levels in complex matrices (using isotopic dilution and gas chromatography-high resolution mass spectrometry) remains time and cost-consuming, growing efforts of the scientific community have been focused on the development of screening approaches, including AhR mediated assays. Unfortunately, AhR ligands are highly diverse and agonistic/antagonistic effects can be observed on procedural blanks and/or sample extracts. In this study, the influence of solvent grade quality on the response of a DNA-binding AhR mediated assay used for screening dioxins has been investigated. Our results demonstrated a very critical impact of this parameter with both strong agonistic and antagonistic effects observed for any tested solvent lot. A small silver nitrate silica column removed partly these interfering compounds and then can be recommended as final purification step. Some preferable grades can be identified and selected in order to guarantee the best possible performances. However, it appears necessary to test every new lot, even if a grade appeared previously compliant.     

Trimerization products of trifluoroacetone: critical solvent effect on position and kinetics of anomeric equilibria

In the presence of bases, trifluoroacetone is known to trimerize leading to configurationally labile 6-methyl-2,4,6-tris(trifluoromethyl)tetrahydro-2H-pyran-2,4-diols 1a,b and 2a,b, structurally close to fluorinated carbohydrates. We report herein a complete study of their behavior in solution. The remarkable solvent effect on the two equilibria (1a <--> 1b; 2a <--> 2b) was rationalized using solvent basicity measures and polarity scales. Solvents of weak donor number were found to favor the diastereoisomers 1a and 2a, which were subsequently isolated. According to their X-ray analyses, they both possess a concave structure with 1,3-cis-diaxial hydroxyl groups. A complementary kinetic study illustrated that acidic conditions can drastically reduce the equilibration rate, allowing the use of a wide range of solvents. Finally, a reexamination of previously published trimerization conditions using sodium or magnesium amalgam revealed that, contrary to the suggestion by two independent reports, 1,3,5-tris(trifluoromethyl)cyclohexane-1,3,5-triol 3/4 was neither formed as the principal product in place of 1a,b and 2a,b nor could it be detected as a minor product.     

Influence of the water content of the solvent on the product distribution in the electrohydrodimerization of 2-cyclohexenones

The product distribution of compounds 2 , 3 and 4 formed in the electrohydrodimerization (EHD) of 1 was determined as function of the water content of the solvent (CH₃CN). The presence of water favours the formation of the glycols 4 and reduces the relative amounts of 1,6-diketones 2 and hydroxyketones 3 , as determined by GC./MS.-analysis.     

Treatment of charge singularities in implicit solvent models

This paper presents a novel method for solving the Poisson-Boltzmann (PB) equation based on a rigorous treatment of geometric singularities of the dielectric interface and a Green's function formulation of charge singularities. Geometric singularities, such as cusps and self-intersecting surfaces, in the dielectric interfaces are bottleneck in developing highly accurate PB solvers. Based on an advanced mathematical technique, the matched interface and boundary (MIB) method, we have recently developed a PB solver by rigorously enforcing the flux continuity conditions at the solvent-molecule interface where geometric singularities may occur. The resulting PB solver, denoted as MIBPB-II, is able to deliver second order accuracy for the molecular surfaces of proteins. However, when the mesh size approaches half of the van der Waals radius, the MIBPB-II cannot maintain its accuracy because the grid points that carry the interface information overlap with those that carry distributed singular charges. In the present Green's function formalism, the charge singularities are transformed into interface flux jump conditions, which are treated on an equal footing as the geometric singularities in our MIB framework. The resulting method, denoted as MIBPB-III, is able to provide highly accurate electrostatic potentials at a mesh as coarse as 1.2 A for proteins. Consequently, at a given level of accuracy, the MIBPB-III is about three times faster than the APBS, a recent multigrid PB solver. The MIBPB-III has been extensively validated by using analytically solvable problems, molecular surfaces of polyatomic systems, and 24 proteins. It provides reliable benchmark numerical solutions for the PB equation.     

Energy contribution of the solvent to the charge migration in DNA

The authors have investigated the interactions of the reaction centers, participating in the charge transfer reaction within the DNA molecule with the phosphate backbones and the solvent molecules, and have estimated the contribution of these interactions into the charge migration in DNA. They have determined the unequal shift of the energy surfaces of the initial and final transition states of the transfer reaction along the energy axis and the dependence of the magnitude of the energy shift on the nature of the reaction centers and the surrounding environment. The nonuniform distribution of the negative charge in the DNA phosphate backbones results in an increase of the positive shift of the energy surface of the DNA base pairs in the center of the structure, where the maximum density of the negative charge is concentrated. Localization of the positive charge on the guanine and the adenine in the DNA base pairs in the oxidized state results in a dependence of the free energy of reaction in the solvent on the pair sequences and their arrangement in the DNA chain. As an example, for the G-C/A-T configuration the positive charges are localized on the same strand that results in a decrease of the free energy of reaction in the solvent for charge migration from G-C to A-T pair by 0.125 eV.     

Influence of solvent on the growth of ZnO nanoparticles

We have synthesized ZnO nanoparticles by precipitation from zinc acetate in a series of n-alkanols from ethanol to 1-hexanol as a function of temperature. In this system, nucleation and growth are relatively fast and, at longer times, the average particle size continues to increase due to diffusion-limited coarsening. During coarsening, the particle volume increases linearly with time, in agreement with the Lifshitz-Slyozov-Wagner (LSW) model. The coarsening rate increases with increasing temperature for all solvents and increases with alkanol chain length. We show that the rate constant for coarsening is determined by the solvent viscosity, surface energy, and the bulk solubility of ZnO in the solvent.     

An averaged solvent electrostatic potential from molecular dynamics study of the anomeric equilibrium of D-xylose in aqueous solution

We applied the free-energy perturbation method together with the averaged solvent electrostatic potential from molecular dynamics (ASEP/MD) method to study the anomeric equilibrium of d-xylose in aqueous solution. The level of calculation, 6-311G++(2d,2p) basis set and density functional theory, permits one to explain the main characteristics of the anomeric equilibrium of d-xylopyranose: in vacuo, the anomeric effect predominates and the form is the stabler. In water, solvation leads to the form being the stabler. A comparison between the performances of the ASEP/MD and polarizable continuum models is also presented.Contribution to the Jacopo Tomasi Honorary Issue     

Influence of solvent on platinum catalyst formation

The adsorption properties of Pt-black reduced in various solvents (water, sulfuric acid, ethanol, alkali, heptane) have been studied. The nature of solvent is shown to influence the catalyst surface formation, the heat of hydrogen adsorption and the ratio of its forms.

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Pt-, : , , , , . , , .

     

Correlation and the charge distribution of atoms

The dynamical correlation can be considered through an effective potential within the independent particle approximation. An expression for the correlation energy is deduced from a first-order pertubation by using a delta-function approximation of this potential. This energy expression is discussed as a function of electron density and electron potential at the nucleus.