Infrared and raman spectra of methyl thiocyanate and conformations of some alkyl thiocyanates and isothiocyanates

The infrared spectra (3200-40 cm^?) of gaseous and solid methylthiocyanate and the Raman spectra (3200-10 cm^?) of the liquid and solid have been recorded. A complete vibrational assignment is presented based on group frequencies, infrared gas phase band contours, and Raman depolarization values. From the infrared and Raman spectra of the solid, it is clear that there are at least two molecules per primitive cell. The spectral results will be discussed and compared to other alkyl thiocyanates and isothiocyanates.     

Vapor Phase Vibrational Spectra for Re(2)O(7) and the Infrared Spectrum of Gaseous HReO(4). Molecular Shapes of Mn(2)O(7), Tc(2)O(7), and Re(2)O(7)

The Raman and infrared spectra of gas phase Re(2)O(7) are reported. The experimental vibrational spectra of molecular Tc(2)O(7) and Re(2)O(7) are compared with calculated spectra. The results of these studies agree with a nonlinear M-O-M bridge for Tc(2)O(7) and Re(2)O(7). For infrared intensity calculations, the point charge approximation is used, while for the Raman calculations a combination of bond and atom polarizabilities is adopted. Pure Re(2)O(7) was prepared from rhenium wire, but attempts to prepare it from rhenium powder and oxygen always led to infrared spectra showing serious contamination from a species containing an -OH linkage. Detailed experiments identified this molecule as HReO(4), a unique transition metal analogue of the perhalic acids, and a partial infrared spectrum of this molecule is reported.     

Quantum chemical studies of FT-IR and Raman spectra of methyl 2,5-dichlorobenzoate

In this paper, experimental and theoretical studies on the molecular structure and vibrational spectra of methyl 2,5-dichlorobenzoate (MDCB) are presented. Fourier transform infrared and Raman spectra of the title molecule in the solid phase were recorded and analyzed. The geometrical parameters were calculated using DFT (B3LYP) with 6-311G(d,p) and 6-311++G(d,p) basis sets, and compared with the experimental data. The vibrational frequencies, infrared intensities and Raman scattering activities were also reported. The detailed assignments were given based on the total energy distribution of the vibrational modes, calculated with scaled quantum mechanics method. The observed and calculated frequencies are found to be in good agreement.     

Conformational behaviour of fluorinated ethylamines

The infrared and Raman spectra of various flourinated ethylamines have been obtained for different phases. Emphasis has been put on the conformational behaviour in inert gas matrices. Some preliminary results for 2-fluoroethylamine and 2,2,2-trifluoroethylamine are given in the present communication. The two gauche conformers of 2-fluoroethylamine which are observed in the vapour phase are also present in the argon and nitrogen matrices. A conformational change, possibly to an anti conformer, is observed after a few hours in the argon matrix. For 2,2,2-trifluoroethylamine no conformational change is observed in the matrices.     

Vibrational spectrum and structure of dimethylamino-dichloroarsine

The infrared spectra of solid and gaseous dimethylaminodichloroarsine have been recorded from 4000 to 33 cm⁻¹. The Raman spectra of the liquid and solid phases have also been recorded. A comparison of the Raman spectra of the liquid and solid indicates that there is a change in conformational composition between the two phases. The isomer present at room temperature in the liquid and gas phases is assigned to the trans form. A study of the temperature dependence of the intensities of the Raman spectrum indicates that the trans form is converted to a second isomer which is believed to be the gauche isomer as the temperature is decreased. At −190°C, the Raman intensities indicate that the molecule still exists as a mixture of these two isomers. A vibrational assignment is presented and discussed in detail.     

Vibrational analysis of isopropyl nitrate and isobutyl nitrate

Raman and infrared spectra of isopropyl nitrate and isobutyl nitrate are reported. These spectra are used in combination with computational studies employing density functional theory at the B3-LYP/6-31G* level to assign the vibrational transitions to their corresponding normal coordinates. Similar to other alkyl nitrates, the frequency of the NO2 symmetric stretch remains relatively unchanged while the asymmetric stretch shifts to lower frequency with increasing alpha-carbon substitution. The mode assignments involving the photochemically relevant -ONO2 chromophore agree well with those from previous infrared work. Raman depolarization ratios are also presented, and provide evidence that the condensed phase, ground-state molecular structure of isobutyl nitrate is of Cs symmetry. In contrast, the minimum energy structure of isopropyl nitrate is predicted to contain a pronounced twist around the C-O bond relative to the Cs-symmetry structure that lies 2.6 kcal/mol higher in energy. Infrared intensities of isopropyl nitrate are consistent with the twisted geometry, demonstrating that this conformer is favored in solution.     

Fourier transform Raman spectroscopic study of main-chain thermotropic liquid crystalline polyesters

The Fourier transform infrared and Raman spectra of the semi-flexible main-chain thermotropic liquid crystal polyester, poly(heptamethylene terephthaloyl-bis-4-oxybenzoate) are presented, and tentative band assignments given. The polymer is investigated as a function of its thermal history, and Fourier transform Raman spectra are recorded with temperature using a high-temperature cell. The results are discussed along with calorimetric and X-ray scattering data. Spectral evidence is presented which is related to both the sample crystallinity, and the crystal-to-liquid crystal phase transition.     

Cavity-enhanced Raman spectroscopy with optical feedback cw diode lasers for gas phase analysis and spectroscopy

A variant of cavity-enhanced Raman spectroscopy (CERS) is introduced, in which diode laser radiation at 635 nm is coupled into an external linear optical cavity composed of two highly reflective mirrors. Using optical feedback stabilisation, build-up of circulating laser power by 3 orders of magnitude occurs. Strong Raman signals are collected in forward scattering geometry. Gas phase CERS spectra of H(2), air, CH(4) and benzene are recorded to demonstrate the potential for analytical applications and fundamental molecular studies. Noise equivalent limits of detection in the ppm by volume range (1 bar sample) can be achieved with excellent linearity with a 10 mW excitation laser, with sensitivity increasing with laser power and integration time. The apparatus can be operated with battery powered components and can thus be very compact and portable. Possible applications include safety monitoring of hydrogen gas levels, isotope tracer studies (e.g., (14)N/(15)N ratios), observing isotopomers of hydrogen (e.g., radioactive tritium), and simultaneous multi-component gas analysis. CERS has the potential to become a standard method for sensitive gas phase Raman spectroscopy.     

Vibrational spectra of dimethyl aluminium hydride

The infrared and Raman spectra of dimethyl aluminium hydride and its partially deuterated isotopomers are reported and assigned. On the basis of variable temperature studies, coupled with isotope shifts and normal coordinate analysis, it is shown that the vapour phase infrared spectrum at room temperature may be interpreted as predominantly that of the dimer, with smaller amounts of trimer.     

Ab initio studies of solvent effect on molecular conformation and vibrational spectra of diacetamide

The conformational equilibria and vibrational spectra of diacetamide have been investigated by ab initio molecular orbital studies using the basis sets 6-31g(d,p) and 6-31++g(d,p) at Hartree-Fock and MP2 levels. The vibrational spectra of diacetamide have been satisfactorily interpreted taking into consideration the agreement between the calculated harmonic vibrational frequencies, infrared and Raman band intensities and shifts in deuterated molecules with those observed. The solvent effects were investigated by the self-consistent reaction field (SCRF) theory. The effect of solvent on the conformational equilibria and vibrational spectra is discussed. The calculated changes in the geometry and vibrational spectra on going from the gas phase to the solvent medium are in accord with the increasing weight of the dipolar resonance structure of the amide group in more polar solvents.     

Overview of the use of theory to understand infrared and Raman spectra and images of biomolecules: colorectal cancer as an example

In this work, we present the state of the art in the use of theory (first principles, molecular dynamics, and statistical methods) for interpreting and understanding the infrared (vibrational) absorption and Raman scattering spectra. It is discussed how they can be used in combination with purely experimental studies to generate infrared and Raman images of biomolecules in biologically relevant solutions, including fluids, cells, and both healthy and diseased tissue. The species and conformers of the individual biomolecules are in many cases not stable structures, species, or conformers in the isolated state or in non-polar non-strongly interacting solvents. Hence, it is better to think of the collective behavior of the system. The collective interaction is not the simple sum of the individual parts. Here, we will show that this is also not true for the infrared and Raman spectra and images and that the models used must take this into account. Hence, the use of statistical methods to interpret and understand the infrared and Raman spectra and images from biological tissues, cells, parts of cells, fluids, and even whole organism should change accordingly. As the species, conformers and structures of biomolecules are very sensitive to their environment and aggregation state, the combined use of infrared and Raman spectroscopy and imaging and theoretical simulations are clearly fields, which can benefit from their joint and mutual development.     

Fourier transform infrared and raman spectra, vibrational assignment and ab initio calculations of terephthalic acid and related compounds

The Fourier transform infrared and Raman spectra of solid terephthalic acid, p-C6H4(COOH)2, have been recorded, and the Fourier transform Raman spectra for the terephthalate anion were measured. The wavenumbers for the band positions have been calculated in order to assign them. Moller-Plesset (MP2) and Density functional theory (DFT) calculations have been carried out with Huzinaga-Dunning basis sets (DZV). Also, a normal coordinate analysis through the Wilson-El'yashevich method was performed. The differences between the calculated ab initio spectra and the spectra of the solid phase have been interpreted with respect to the different C(2h) and C(i) local symmetry in the gas and in the solid phase, respectively, and considering also the formation of long-chains of terephthalic acid in the solid phase. In spite to the absence of experimental data for the cis conformation, calculations have been carried out and structural parameters and infrared intensities have been evaluated for the trans and cis conformations of terephthalic acid.     

Density functional theory study of the Fourier transform infrared and Raman spectra of Cu(II) bis-acetylacetone

Fourier transform infrared and Fourier transform Raman spectra of Cu(II) bis-acetylacetone have been obtained. The geometry, frequency and intensity of the vibrational bands of this compound and its 1,5-(13)C(2), 3-(13)C, 1,3,5-(13)C(3), 2,4-(13)C(2), (18)O(2) and 2,4-(13)C(2)-(18)O(2) derivatives were obtained by the density functional theory (DFT) with the B3LYP functional and using the 6-31G(*) and 3-21G(*) basis sets. The calculated frequencies are compared with the solid infrared and Raman spectra. All the measured infrared and Raman bands were interpreted in terms of the calculated vibrational modes. The percentage of deviation of the bond lengths and bond angles gives a good picture of the normal modes, and serves as a basis for the assignment of the wavenumbers. Most computed bands are predicted to be at higher wavenumbers than the experimental bands. The calculated geometrical parameters show slight differences compared with the experimental results. These differences can be explained by the different physical state of Cu(II) bis-acetylacetone. The DFT-B3LYP calculations assumed a free molecule in the gas phase. Analysis of the vibrational spectra indicates a strong coupling between the chelated ring modes.     

A vibrational-spectroscopic study of the SO2−H2O system

Raman and infrared spectra of gaseous SO₂ and SO₂ dissolved in H₂O and D₂O have been recorded. Although the results are in general agreement with previous work, some new infrared data is presented, as well as results on the effect of phase and solvent change on the infrared and Raman spectra. Previous workers have used the technique of vibrational spectroscopy to investigate the structure of the pyrosulfite ion in solution. The present study indicates that it is difficult to make conclusive statements concerning the structure of this ion on the basis of present and previous work. Solutions containing the sulfite ion have also been studied. Spectral differences between previous studies have been investigated, and an earlier study by Bernstein is essentially substantiated, although the present work does indicate, some discrepancy in the 900–1100-cm^? region for this ion.     

C-H stretching vibrations of methyl, methylene and methine groups at the vapor/alcohol (N = 1-8) interfaces

In IR and Raman spectral studies, the congestion of the vibrational modes in the C-H stretching region between 2800 and 3000 cm(-1) has complicated spectral assignment, conformational analysis, and structural and dynamics studies, even with quite a few of the simplest molecules. To resolve these issues, polarized spectra measurement on a well aligned sample is generally required. Because the liquid interface is generally ordered and molecularly thin, and sum frequency generation vibrational spectroscopy (SFG-VS) is an intrinsically coherent polarization spectroscopy, SFG-VS can be used for discerning details in vibrational spectra of the interfacial molecules. Here we show that, from systematic molecular symmetry and SFG-VS polarization analysis, a set of polarization selection rules could be developed for explicit assignment of the SFG vibrational spectra of the C-H stretching modes. These polarization selection rules helped assignment of the SFG-VS spectra of vapor/alcohol (n = 1-8) interfaces with unprecedented details. Previous approach on assignment of these spectra relied on IR and Raman spectral assignment, and they were not able to give such detailed assignment of the SFG vibrational spectra. Sometimes inappropriate assignment was made, and consequently misleading conclusions on interfacial structure, conformation and even dynamics were reached. With these polarization rules in addition to knowledge from IR and Raman studies, new structural information and understanding of the molecular interactions at these interfaces were obtained, and some new spectral features for the C-H stretching modes were also identified. Generally speaking, these new features can be applied to IR and Raman spectroscopic studies in the condensed phase. Therefore, the advancement on vibrational spectra assignment may find broad applications in the related fields using IR and Raman as vibrational spectroscopic tools.     

Flow-through microdispenser for interfacing micro-HPLC to Raman and mid-IR spectroscopic detection

A flow-through microdispenser has been coupled to a micro HPLC separation system and used as a solvent elimination interface for Fourier transform infrared (FTIR) and Raman spectroscopic detection of the separated compounds. Using the microdispenser picoliter sized droplets can be generated and deposited on an appropriate target placed on a computerized x, y-stage. Evaporation of volatile solvent and buffer is rapid and allows analysis of the obtained dry deposits by various techniques. Due to the destruction free character of Raman and FTIR spectroscopy they can be applied sequentially to interrogate the same deposit. In the reported application five phenolic acids typically present in wine have been separated on a C-18 column technique using a mixture of water, methanol and acetic acid as mobile phase. For spectrum acquisition infrared and Raman microscopes have been used. The spectra recorded from the dried deposits of the separated compounds agreed well with the reference spectra of corresponding components.     

Vibrational spectra and normal coordinate analysis of CF3 compounds Part XLVII. Vibrational spectra, normal coordinate analysis and electron diffraction investigation of CF3SiH3 and its deuterated varieties

The molecular structure of CF₃SiH₃ in the gas phase has been determined by electron diffraction analysis. Combined with a B₀ value derived from high resolution infrared spectra, this yielded r(SiC), 1.923(3) Å, r(SiH) 1.482(5) Å, r(CF) 1.348(1) Å, FCF 106.7(5)° and HSiH 110.3(10)° (r° values). The gas phase infrared and liquid phase Raman spectra of CF₃SiH₃, CF₃SiH₂D, CF₃SiD₃ have been measured and assigned, and force constants have been calculated by means of a normal coordinate analysis based on 52 experimental frequencies. The weakness of the SiC bond is confirmed by the low f(SiC) value of 2.54 N cm⁻¹. Infrared spectra recorded with a resolution of 0.04 cm⁻¹ at 240 K revealed rotational structure of vibrational bands. Rotational analyses of most parallel and a few perpendicular bands of CF₃SiH₃ and CF₃SiD₃ have been performed. Ground and excited state vibrational parameters have been obtained and used as supplementary data for the determination of the harmonic force field. Strong blending of all bands due to hot band cascades was noted.     

Development of a Fiber Optic Probe to Measure NIR Raman Spectra of Cervical Tissue In Vivo

The goal of this study was to develop a compact fiber optic probe to measure near infrared Raman spectra of human cervical tissue in vivo for the clinical diagnosis of cervical precancers. A Raman spectrometer and fiber optic probe were designed, constructed and tested. The probe was first tested using standards with known Raman spectra, and then the probe was used to acquire Raman spectra from normal and precancerous cervical tissue in vivo. Raman spectra of cervical tissue could be acquired in vivo in 90 s using incident powers comparable to the threshold limit values for laser exposure of the skin. Although some silica signal obscured tissue Raman bands below 900 cm^-1, Raman features from cervical tissue could clearly be discerned with an acceptable signal-to-noise ratio above 900 cm^-1. The success of the Raman probe described here indicates that near infrared Raman spectra can be measured in vivo from cervical tissues. Increasing the power of the excitation source could reduce the integration time to below 20 s.     

Vibrational spectra, ab initio calculations, and ring-puckering potential energy function for gamma-crotonolactone

The infrared and Raman spectra of liquid and vapor gamma-crotonolactone have been collected. Both the experimental data and ab initio calculations show that the molecule is rigidly planar in its electronic ground state. This conclusion agrees with the previously reported microwave studies and is attributed to the conjugation between the C=C and C=O double bonds of the ring. The ring-puckering potential energy function was generated from ab initio calculations and was confirmed by the vapor-phase Raman spectra to be nearly harmonic. Density functional theory (DFT) calculations predict a harmonic ring-puckering frequency of 203 cm(-1) as compared to the observed vapor-phase Raman value of 208 cm(-1). The DFT calculations were also used to compute the infrared and Raman spectra of gamma-crotonolactone, and these agree very well with the experimental spectra.