四氟乙烯齐聚体的反应 四氟乙烯四、五聚体和芳香胺的反应

前已报道四氟乙烯四聚体(全氟-3,4-甲基己烯-3)(1)、五聚体(全氟-3,4-二甲基-4-乙基己烯-2)(2)和脂肪烷氧以及脂肪胺的亲核反应.本文报道化合物1,2和芳香胺如苯胺、β-萘胺的反应.由于烯烃1、2双键处于分子中间,因而当亲核试剂进攻时,双键容易发生重排,生成的末端基烯烃更具反应性,故导致一取代、二取代、三取代以及环化降解等复杂产物.     

PHOTOCHEMISTRY OF QUINOLYLMETHYLISOTHIORONIUM SALTS. GUANINE SELECTIVE DNA PHOTOCLEAVAGE REAGENTS

Quinolylmethylisothioronium salts (1a and 4a) cleave DNA upon irradiation. The cleavage is more than 10-fold enhanced by piperidine treatment and subsequently shows a high preference for guanines. Photolysis of 1a, 2a and 4a in water at lambda greater than 300 nm resulted in photoheterolysis. Irradiation of 1a in 2-propanol gave only products from photohomolysis, irradiation of 1a in methanol and 2a and 4a in 2-propanol resulted in products from both photoheterolysis and photohomolysis. Quantum yields for the disappearance of 1a in water and 2-propanol were determined. The presence or absence of oxygen had no effect in water, whereas oxidation products were observed upon irradiation in methanol and 2-propanol in the presence of oxygen. The guanine specific DNA photoreaction is proposed to take place by alkylation at N7 via the quinolylmethyl carbocation and thus to represent a photoalkylation.     

Direct drug metabolism monitoring in a live single hepatic cell by video mass spectrometry

The metabolism of anti-breast cancer drug, tamoxifen, in a single human hepatocellular carcinoma cell, HepG2, was directly monitored by a video-mass spectroscope. The cytoplasm, a vacuole or nucleus of the cell was directly sucked by a nano-spray tip under a video-microscope, and then was introduced into a mass spectrometer. Unchanged drug molecules were found in cytoplasm and a vacuole, but the metabolites were only found in the cytoplasm. This direct detection of drug metabolites in a live single cell is useful for speedy drug metabolism monitoring.     

Modeling of interface phenomena in liquid under vibration, using the chemical model

An analysis of interface phenomena in a liquid under a vibration field is presented, based on the chemical model of vibration in a liquid. The objects studied are a bubble, a solid surface, and a linear macromolecule, in a vibrated liquid. It is concluded that many sonochemical phenomena can be realized in some different (two or more) mechanisms, and mutually stimulate. Inharmonic effects and the influence of distant neighbors are analyzed.     

Modeling of the pseudo-colloids migration for multi-member decay chains with a arbitrary flux boundary condition in a fractured porous medium

A deep geologic disposal is the prime option for the long-term isolation of high-level radioactive waste (HLW) in many countries. For deeply located repositories, a radionuclide released from a failed waste container moves through the engineered and natural barriers before it reaches a biosphere. The pseudo-colloid which a radionuclide is adsorbed on a moving natural humic or fulvic colloid can be generated in a fractured porous medium. The size of a colloid is in general in the order of a hundred nanometer so that its migration velocity in a fracture is higher than that of a radionuclide due to the hydrochromatic effect. A large colloid cannot diffuse easily into a surrounding rock. Also, there are many kinds of actinides and these actinides have decay chains. In this analysis, the canonical form solution is derived for a pseudo-colloid and a solute in a fracture and a surrounding rock with a realistic inlet boundary condition with multi-member decay chains. It is used the Fortran based a computational code which uses a special subroutine for the inversion of Laplace transform. Consequently, the role of the pseudo-colloid in the fractured porous medium is important and also their decay chains aren’t neglected in the performance assessment of the HLW.     

Droplet formation in a thin layer of a two-component solution under the thermal action of laser radiation

Droplet growth in thin layers of water-alcohol solutions under the effect of a concentration-induced capillary flow, which is governed by a laser electromagnetic radiation, is investigated. It is established that an increase in water concentration in a solution accelerates the droplet growth. In low-concentrated solutions, a droplet may reach a quasi-steady state, in which its diameter is no larger than the diameter of the light beam projection onto the layer. A rise in the radiation power above an optimal magnitude decelerates the droplet growth. In low-concentrated solutions, this deceleration results from a decrease in the flow that feeds the droplet, while in high-concentrated solutions, it is due to a droplet constriction and an increase in its curvature radius.     

Hydrogen-bond-assisted control of H versus J aggregation mode of porphyrins stacks in an organogel system

To obtain insights into a correlation relationship between the structure and the aggregation mode in an organogel system, we synthesized gelators 2a-4a bearing a porphyrin moiety as a one-dimensional aggregation unit and amide groups as peripheral hydrogen-bonding sites. Gelators 3a and 3b bearing the amide groups at the 4-position of the meso-phenyl groups are classified as versatile gelators, gelating 10 and 14 solvents, respectively, among 23 solvents tested herein. In contrast, gelators 2a and 4a bearing the amide groups at the 3,5-positions and 3-position, respectively, are classified as poor gelators. Examination by spectroscopic methods (UV-vis, ATR-FTIR, XRD, etc.) revealed that in the organogel phase porphyrins in 3a adopt the H aggregation mode whereas those in 2a and 4a adopt the J aggregation mode. X-ray analysis of the single crystals established that in fact 3b features a columnar stack of porphyrin moieties that can be classified as the H-aggregate, whereas 2a results in a two-dimensional a-b plane, in which porphyrin moieties are arranged in the J-aggregate. Very interestingly, the difference in the H versus J aggregation mode is well-reflected by the difference in the macroscopic aggregate morphology observed by SEM: 3a + cyclohexane gel results in a one-dimensionally aggregated fibrillar structure, whereas 2a + cyclohexane gel results in a two-dimensional sheetlike structure. These findings indicate that the H versus J aggregation mode of porphyrin stacks can be controlled by the peripheral hydrogen-bonding interactions and the microscopic hydrogen-bonding network structure is well-reflected by the macroscopic SEM-observed structure.     

CSTR和批式反应器中酶法拆分萘普生的比较

比较了批式反应器和连续流动搅拌反应器中酶动力学拆分萘普生的不同之处。从宏观反应器平衡角度,推导出了在ＣＳＴＲ中不同于在批式反应器中的酶立体选择性,产物对映体过量值和反应转化率的定量关系式,并通过脂肪酶催化的萘一甲酯的不对称水解反应得到了证实。     

Study of the electrochemical reduction of dioxygen in acetonitrile in the presence of weak acids

The electrochemical reduction of dioxygen has been studied in acetonitrile at glassy-carbon electrodes. The initial step is the reversible one-electron reduction to form superoxide. In the presence of hydrogen-bond donors (water, methanol, 2-propanol), the superoxide forms a complex with the donor resulting in a positive shift in the potential that can be analyzed to obtain formation constants for these complexes. Stronger acids result in protonation of the superoxide followed by reduction to produce HO2-. In the absence of hydrogen-bond donors, the reduction of superoxide occurs at very negative potentials, and this second reduction peak is very much drawn-out along the potential axis, indicating a small value of the transfer coefficient, alpha. The addition of hydrogen-bond donors, HA, brings about a positive shift in this peak, without a noticeable change in shape. The reaction occurring at the second peak is a concerted proton and electron transfer (CPET) in which the electron is transferred to superoxide and a proton is transferred from HA to the superoxide, forming HO2- and A- in a concerted process. An estimation of the standard potential for this reaction shows that the second reduction always occurs at a high driving force, which explains the small value of alpha that is observed. Consistent with a CPET, a kinetic isotope effect, HA versus DA, was detected for the three hydrogen-bond donors. The increasing positive shift of the second peak with increasing water concentration has been interpreted as being a consequence of the change in the formal potential, as water is both a reactant in the process and a participant through the hydrogen-bond stabilization of the anions.     

TDP-mycaminose biosynthetic pathway revised and conversion of desosamine pathway to mycaminose pathway with one gene

Analysis of the tylosin gene cluster in Streptomyces fradiae uncovered an ORF, tyl1a, homologous to a hexose 3,4-isomerase found in Aneurinibacillus thermoaerophilus. Inclusion of the tyl1a gene along with other mycaminose biosynthetic genes (tylB, tylM1, tylM2, tylM3) identified in previous studies in an in vivo expression system successfully reconstituted the mycaminose pathway. Expression of tyl1a alone in the S venezuelae KdesI mutant converted a desosamine pathway to a mycaminose pathway. These results strongly support the role of Tyl1a as a TDP-4-keto-6-deoxy-d-glucose 3,4-isomerase.     

Real-time monitoring of brain energy metabolism in vivo using microelectrochemical sensors: the effects of anesthesia

Rats were implanted in the striatum with a Pt/Ir electrode for measurement of regional cerebral blood flow (rCBF) (H(2) clearance technique), a carbon paste electrode for monitoring tissue oxygen and a glucose biosensor for monitoring extracellular glucose. Changes in all three parameters were recorded in response to the intraperitoneal (i.p.) administration of the anesthetics chloral hydrate (350 mg/kg), sodium pentobarbitone (60 mg/kg) and ketamine (200 mg/kg). An i.p. injection of normal saline, given as a control for the injection of the anesthetics, produced a parallel increase in rCBF and tissue oxygen accompanied by a brief decrease in extracellular glucose. Changes in tissue oxygen reflected the changes in rCBF; there was a decrease in both after sodium pentobarbitone, a decrease followed by a rebound after ketamine and a transient increase after chloral hydrate. All three anesthetics produced a decrease in extracellular glucose. The disparity between the changes in glucose and the changes in rCBF and oxygen suggests that during anesthesia, the reduction in extracellular glucose is not due to a reduction in the direct delivery of glucose from the blood vascular system. These results also indicate that levels of enzymatic substrates and mediators, which are intrinsic to the design and operation of amperometric biosensors, are clearly altered in a complex manner by anesthesia and suggest that caution should be exercised in extrapolating data from acute anesthetized experiments to normal physiology.     

Fast choice of separation conditions for analyses by capillary zone electrophoresis using an information system Xemic

An information system Xemic applicable in analytical chemistry is described and its use in capillary electrophoresis for searching suitable separation conditions is demonstrated. This system is capable to provide suitable separation conditions even for analytes for which no electrophoretic experiments have been published so far. The system works with a database of components of anionic character the analyses of which have been performed, published in reviewed scientific journals, and included into a database created by an expert. Moreover, the system learned to search also in abstracts or complete scientific articles to find articles dealing with the determination of a substance in a given sample matrix. When no experiments have been published so far for a defined substance in a specific matrix, Xemic shows the separation conditions for determination of the substance regardless of the matrix. When no response can be found for the analyte of interest at all, the system Xemic works like an expert in the field and searches chemically similar substances and offers a series of substances the physicochemical properties of which are close to the followed analyte with respect to the behavior in the electric field, and shows working conditions for their analysis. Thus, the analyst puts only the order in the form of a given analyte in a given matrix and obtains a recommendation of a separation system that should enable to perform a successful separation. The system is not rigid and enables the operator to change the importance of individual attributes used in similarity search so as to obtain a broader or narrower group of similar components. With a certain probability the analyte of interest can be successfully analyzed under separation conditions that suited for the analysis of the most similar substances in the given matrix.     

Orbital signatures of methyl in L-alanine

Molecular orbital signatures of the methyl substituent in L-alanine have been identified with respect to those of glycine from information obtained in coordinate and momentum space, using dual space analysis. Electronic structural information in coordinate space is obtained using ab initio (MP2/TZVP) and density functional theory (B3LYP/TZVP) methods, from which the Dyson orbitals are simulated based on the plane wave impulse approximation into momentum space. In comparison to glycine, relaxation in geometry and valence orbitals in L-alanine is found as a result of the attachment of the methyl group. Five orbitals rather than four orbitals are identified as methyl signatures. That is, orbital 6a in the core shell, orbitals 11a and 12a in the inner valence shell, and orbitals 19a and 20a in the outer valence shell. In the inner valence shell, the attachment of methyl to glycine causes a splitting of its orbital 10a' into orbitals 11a and 12a of L-alanine, whereas in the outer valence shell the methyl group results in an insertion of an additional orbital pair of 19a and 20a. The frontier molecular orbitals, 24a and 23a, are found without any significant role in the methylation of glycine.     

Direct determination of traces of Ag, Cd, Pb, Bi, Cr, Mn, Co, Ni, Li, Be, Cu and Sb in environmental waters and geological materials by simultaneous multi-element graphite furnace atomic absorption spectrometry with Zeeman-effect background correction

A method was developed for direct determination of minor and trace amounts of Cr, Mn, Cu, Ni, Co, Li, Pb, Cd, Bi, Sb, Be and Ag in silicate rock, lake and stream sediments using a microwave oven dissolution method and a multi-element graphite furnace atomic absorption spectrometer equipped with a Zeeman-effect background correction device. The measurement technique was also suitable for direct determination of trace and ultra-trace amounts of these elements in drinking and seawater samples. A rock or sediment sample was brought into solution in a Teflon vessel by heating in a microwave oven with a mixture of hydrofluoric acid and aqua regia, followed by a further heating with a mixture of boric acid and ethylenediaminetetraacetic acid. The specified elements were directly determined in a group of four elements in one firing and eight elements in two firings from this solution or from a diluted solution using the optimum operating parameters developed in this work. The method, tested with 23 international reference rocks and sediments and seven international quality control and reference water samples, showed good to excellent agreement with the recommended values.     

Triggering blue-red transition response in polydiacetylene vesicles: an electrochemical surface plasmon resonance method

Electrochemical surface plasmon resonance (E-SPR) was used to investigate whether the chromic properties of a polydiacetylene (PDA) vesicle films, adsorbed onto an ultra-thin gold electrode, could be triggered by applied potential. This approach constitutes a preliminary model for a novel approach to the use of a triggered chromic transition, as an indicator of biorecognition headgroup binding in these materials. A PDA chromic blue-red transition was identified in E-SPR against the background Deltaepsilon(e) and Deltaepsilon(m). The latter resulted in a ca. 100 mDeg V(-1) shift in the SPR minimum, in the presence of PDA, with the PDA shielding changes in epsilon(e). Electrochemical charge transfer processes in the pre-oxide/oxide anodic region with adsorbed oxygen and hydroxide, involving a change in Au redox state (Au(0)/Au(+)) were visible in the SPR, due to a change in the gold layer thickness and gold oxide layer. However, the cathodic processes, not involving a change in the Au redox state or a increase/decrease in the surface layer dielectric, did not cause a change in the SPR. Based on this, dramatic changes in the optical properties of the adsorbed PDA film could be triggered at an applied cathodic potential, and were identified using SPR. These correlated with a pH-induced chromic transition. Both protonation and ion binding, linked with headgroup environment, were implicated in causing structural transitions in the adsorbed vesicle layer that may also be linked with their bulk optical properties.     

Morphology of spinodal decompositions in liquid crystal-colloid mixtures

We study the morphology of spinodal decompositions (SDs) in mixtures of a liquid crystal and a colloidal particle by solving time-dependent Landau-Ginzburg equations for a conserved order parameter (concentration) and two nonconserved order parameters (orientation and crystallization). We numerically examine the coupling between concentration, nematic ordering, and crystalline ordering in two dimensional fluid mixtures, coexisting a nematic and a crystalline phase. On increasing the concentration of colloidal particles, we have three different SDs: a nematic order-induced SD, a phase-separation-induced SD (PSD), and a crystalline-order-induced SD (CSD). In NSD, the phase ordering can lead to fibrillar and cellular networks of the minority colloidal-particle-rich phase in early stages. In the PSD, we find a bicontinuous network structure consisting of a nematic phase rich in liquid crystal and a crystalline phase rich in colloidal particles. In the CSD, nematic droplets can be formed in a crystalline matrix. Asymmetric mixtures of a liquid crystal and a colloidal particle lead to rich varieties of morphologies.     

Some practical aspects of free energy calculations from molecular dynamics simulation

In this work, we address two critical aspects of calculation of the free energy differences in molecular systems from molecular simulations. The first aspect involves checking whether the calculated free energy difference depends significantly on the extent of perturbation used for accomplishment of a given transformation. The second aspect of interest is to verify if the sampling errors in calculating the free energy differences between the wild-type molecule and a mutated one in its free state and in a complex are similar, or not, for a finite-length dynamic simulation. The reliability of the free energy estimates obtained from molecular simulations using thermodynamic cycles depends in part on this fact. For investigating these aspects, we use a self-transformation scheme in which a transformation of a part of a molecular system into itself is considered. We perform MD simulations of DNA fragments in which a part of a specific base is subjected to such a self-transformation. Results indicate that the estimated free energy differences do not depend significantly on the extent of perturbation used to achieve the transformation. Interestingly, the variation in the cumulative free energy difference, ΔA, with the coupling parameter, λ, depends significantly on the extent of perturbation. We examine the physical basis of the observed nature of the variation of the accumulated free energy difference, ΔA, against the λ value in the case of a self-transformation. In a thermodynamic cycle, the sampling errors due to the finite-length simulation for the molecular system are found to be similar to each other for the two perturbations (free and in a complex) justifying the use of such approach in calculating ΔΔA in molecular complexes. ©1999 John Wiley & Sons, Inc. J Comput Chem 20: 877–885, 1999     

A fresh look at dense hydrogen under pressure. II. Chemical and physical models aiding our understanding of evolving H-H separations

In order to explain the intricate dance of intramolecular (intra-proton-pair) H-H separations observed in a numerical laboratory of calculationally preferred static hydrogen structures under pressure, we examine two effects through discrete molecular models. The first effect, we call it physical, is of simple confinement. We review a salient model already in the literature, that of LeSar and Herschbach, of a hydrogen molecule in a spheroidal cavity. As a complement, we also study a hydrogen molecule confined along a line between two helium atoms. As the size of the cavity/confining distance decreases (a surrogate for increasing pressure), in both models the equilibrium proton separation decreases and the force constant of the stretching vibration increases. The second effect, which is an orbital or chemical factor, emerges from the electronic structure of the known molecular transition metal complexes of dihydrogen. In these the H-H bond is significantly elongated (and the vibron much decreased in frequency) as a result of depopulation of the σ(g) bonding molecular orbital of H(2), and population of the antibonding σ(u)? MO. The general phenomenon, long known in chemistry, is analyzed through a specific molecular model of three hydrogen molecules interacting in a ring, a motif found in some candidate structures for dense hydrogen.     

Synthesis and chiroptical analysis of optically active chiral shell dendrons

We have prepared a series of chiral dendrons (1-4) in which chiral subunits are placed in individual generational shells at varying distances from the focal point. The optical activity of these chiral dendritic structures is successfully modeled using structurally similar low-molecular weight model compounds. In dendrons 1a and 1b a chiral subunit is directly adjacent to the focal point, whereas in dendrons 2, 3, and 4a,b the chiral subunits are incorporated in the interior of the dendron. A marked difference in optical activity between the former 1a and 1b) and latter (2, 3, 4a,b) dendrons is mirrored in the optical activities of model compounds 12a, 12b, 19a, and 19b. These model compounds directly mimic the surrounding constitution of the chiral subunits in the dendrons. This successful analysis of the chiroptical data using low-molecular weight model compounds suggests that these dendrons do not possess conformational order in solution.