Diffusional and chemical stability in liquid mixtures

It is shown that strongly non-ideal chemical reactions, exhibiting multiple equilibrium states, can occur only in the diffusionally unstable region in the interior of the usual spinodal curve. The possibility of observing the effect of chemical nonideality in the homogeneous single-phase region near the consolute point is briefly discussed.     

Structure and dynamics of liquid methanol confined within functionalized silica nanopores

Molecular dynamics simulations have been carried out to investigate the structure and dynamics of liquid methanol confined in 3.3 nm diameter cylindrical silica pores. Three cavities differing in the characteristics of the functional groups at their walls have been examined: (i) smooth hydrophobic pores in which dispersive forces prevail, (ii) hydrophilic cavities with surfaces covered by polar silanol groups, and (iii) a much more rugged pore in which 60% of the previous interfacial hydroxyl groups were replaced by the bulkier trimethylsilyl ones. Confinement promotes a considerable structure at the vicinity of the pore walls which is enhanced in the case of hydroxylated surfaces. Moreover, in the presence of the trimethylsilyl groups, the propagation of this interface-induced spatial ordering extends down to the central region of the pore. Concerning the dynamical modes, we observed an overall slowdown in both the translational and rotational motions. An analysis of these mobilities from a local perspective shows that the largest retardations operate at the vicinity of the interfaces. The gross features of the rotational dynamics were analyzed in terms of contributions arising from bulk and surface states. Compared to the bulk dynamical behavior, the characteristic timescales associated with the rotational motions show the most dramatic increments. A dynamical analysis of hydrogen bond formation and breaking processes is also included.     

Multiple time scale behaviors and network dynamics in liquid methanol

Canonical ensemble molecular dynamics simulations of liquid methanol, modeled using a rigid-body, pair-additive potential, are used to compute static distributions and temporal correlations of tagged molecule potential energies as a means of characterizing the liquid state dynamics. The static distribution of tagged molecule potential energies shows a clear multimodal structure with three distinct peaks, similar to those observed previously in water and liquid silica. The multimodality is shown to originate from electrostatic effects, but not from local, hydrogen bond interactions. An interesting outcome of this study is the remarkable similarity in the tagged potential energy power spectra of methanol, water, and silica, despite the differences in the underlying interactions and the dimensionality of the network. All three liquids show a distinct multiple time scale (MTS) regime with a 1/ f (alpha) dependence with a clear positive correlation between the scaling exponent alpha and the diffusivity. The low-frequency limit of the MTS regime is determined by the frequency of crossover to white noise behavior which occurs at approximately 0.1 cm (-1) in the case of methanol under standard temperature and pressure conditions. The power spectral regime above 200 cm (-1) in all three systems is dominated by resonances due to localized vibrations, such as librations. The correlation between alpha and the diffusivity in all three liquids appears to be related to the strength of the coupling between the localized motions and the larger length/time scale network reorganizations. Thus, the time scales associated with network reorganization dynamics appear to be qualitatively similar in these systems, despite the fact that water and silica both display diffusional anomalies but methanol does not.     

Molecular dynamics simulations of liquid water: Voronoi polyhedra and network topology

We have carried out various runs at different temperatures simulating liquid water via the TIP4P model, a well tested and widely used 4-site intermolecular potential. Voronoi polyhedra have been constructed and the distributions of various quantities analyzed. The higher the temperature, the more the distributions are similar to those of a normal liquid: as a reference for a corresponding liquid without hydrogen bonds, we have examined hydrogen sulphide. The typical shape of the Voronoi polyhedra is not too far from the polyhedra of a perfect ice I_h crystal, although the numbers of vertices and faces are almost doubled. Indeed the actual number of vertices increases rapidly toward the liquid value as the crystal is perturbed by thermal motions. It is remarkable that the total surface and volume are always found closely correlated. It denotes a quasi-constant shape, i.e. the various shapes are not dependent on the volume. Indeed a direct analysis shows that there is no correlation between volume and shape. A quantitative characterization of the Voronoi polyhedra shape is proposed, through an “asphericity” parameter, whose distribution is found to be greatly affected by temperature: a net shift of the centre of the curve toward the value for the ice is found as the temperature is lowered. Finally it is found that there is a positive correlation between the potential energy of a molecule and the local volume, thus indicating that the hypothesis that the four-bonded molecules have a local density lower than average is incorrect.     

Retention characteristics of octadecylsilyl silica,trimethylsilyl silica and phenyldimethylsilyl silica in reversed-phase liquid chromatography

Summary The hydrophobic retention characteristics of stationary ligands for reversed-phase high-performance liquid chromatography have been evaluated from the slope (r-value) of the plots relating the capacity factors (log k) of selected aliphatic and aromatic compounds with the reciprocal of methanol concentration (log (1/[MeOH])) in aqueous mobile phase. Octadecylsilyl (ODS), trimethylsilyl (TMS) and phenyldimethylsilyl (phenyl) groups were selected as the stationary ligands bonded to silica support.On ODS or TMS silicas, unlike on phenyl silica, aliphatic compounds gave slightly larger r-values than aromatic compounds, indicating that the shape of the ligand recognizes the hydrophobic surfaces of aliphatic and aromatic solute molecules. On TMS and phenyl silicas, the degree of solute hydrophobicity contributing to its retention is about 90% and 85% of that on ODS silica, respectively. On the other hand, on TMS and phenyl silicas, the polar functional group on the solute molecule brought about a smaller decrease in retention than on ODS silica.     

Structure and dynamics of water confined in silica nanopores

We report the results of molecular simulation of water in silica nanopores at full hydration and room temperature. The model systems are approximately cylindrical pores in amorphous silica, with diameters ranging from 20 to 40 ?. The filled pores are prepared using grand canonical Monte Carlo simulation and molecular dynamics simulation is used to calculate the water structure and dynamics. We found that water forms two distinct molecular layers at the interface and exhibits uniform, but somewhat lower than bulk liquid, density in the core region. The hydrogen bond density profile follows similar trends, with lower than bulk density in the core and enhancements at the interface, due to hydrogen bonds between water and surface non-bridging oxygens and OH groups. Our studies of water dynamics included translational mean squared displacements, orientational time correlations, survival probabilities in interfacial shells, and hydrogen bond population relaxation. We found that the radial-axial anisotropy in translational motion largely follows the predictions of a model of free diffusion in a cylinder. However, both translational and rotational water mobilities are strongly dependent on the proximity to the interface, with pronounced slowdown in layers near the interface. Within these layers, the effects of interface curvature are relatively modest, with only a small increase in mobility in going from the 20 to 40 ? diameter pore. Hydrogen bond population relaxation is nearly bulk-like in the core, but considerably slower in the interfacial region.     

Dynamically modified silica — the use of bare silica in reversed-phase high-performance liquid chromatography

A new approach to reversed-phase high-performance liquid chromatography has been developed and investigated in some detail. Bare silica is used as the column packing material with an aqueous eluent containing a buffer, an organic solvent as the modifier and a long-chain quaternary ammonium ion. The eluent exhibits a high affinity to the silica surface at pH values above 5, thus, dynamically, forming a nonpolar stationary phase.     

Structure and dynamics of liquid water

A review of recent studies on the structure and dynamics of water (in liquid and amorphous states) by physical methods and computer experiment is presented together with a brief summary of historical background. Basic concepts offered for describing the structure and dynamics of water are considered. The structure of water is currently viewed as having a uniform three-dimensional network formed by hydrogen-bonded molecules. The arrangement of this network is dissimilar from that found in any crystal structures; it is dynamically and structurally inhomogeneous. The network is rather labile; water molecules continuously change their neighbors, so that the average lifetime of hydrogen bonds is about a few picoseconds.     

Structure and dynamics of lysozyme encapsulated in a silica sol-gel matrix

Proteins entrapped in sol-gel matrices have been extensively studied during the last 15 years, showing that most of them can be encapsulated with retention of their native structure and functionality and with enhanced stability. However, relatively little is known about the structural and dynamical details of the biomolecule-matrix interactions. To achieve this goal, the model protein hen egg white lysozyme (HEWL) has been entrapped in sol-gel matrices prepared from tetraethyl orthosilicate through an alcohol-free sol-gel route, and the photophysical properties of its fluorescent tryptophans have been determined using both steady-state and time-resolved fluorescence techniques. By combining fluorescence spectra, quenching experiments, lifetimes, and time-resolved fluorescence anisotropy measurements, we have obtained information on the structure, dynamics, and solvation properties of the entrapped protein. Our results show that the environment of HEWL within the silica pore as well as its internal dynamics is similar to that in aqueous solution, except that the protein showed no or, depending on conditions, very much slower global motion but retained its internal angularly restricted (hindered) segmental rotation upon entrapment. The experiments carried out at different experimental conditions indicate that, below the isoelectric point of the protein, a strong electrostatic interaction is established between the protein molecule and the negatively charged sol-gel walls, which is ultimately responsible for the total arrest of the overall rotation of the protein, but without significant effect upon its segmental rotational relaxation. The electrostatic nature of the interaction is clearly established since either reducing the positive charge of the protein (by increasing the pH toward its isoelectric point) or increasing the ionic strength of the solution (shielding against the attractive interaction) leads to a situation in which the protein freely rotates within the matrix pore, albeit an order of magnitude more slowly than that in free solution under similar macroscopic solution conditions, and still retains its segmental rotational properties.     

Ionic and dipolar solvation dynamics in liquid water

The solvation time correlation function for solvation in liquid water was measured recently. The solvation was found to be very fast, with a time constant equal to 55 fs. In this article we present theoretical studies on solvation dynamics of ionic and dipolar solutes in liquid water, based on the molecular hydrodynamic approach developed earlier. The molecular hydrodynamic theory can successfully predict the ultrafast dynamics of solvation in liquid water as observed from recent experiments. The present study also reveals some interesting aspects of dipolar solvation dynamics, which differs significantly from that of ionic solvation. Dedicated to Prof. C N R Rao on his 60th birthday     

High-pressure liquid dispersion and fragmentation of flame-made silica agglomerates

The influence of primary particle diameter and the degree of agglomeration of flame-made silica agglomerate suspensions in aqueous solutions is studied by high-pressure dispersion (up to 1500 bar) through a nozzle with a 125 microm inner diameter. These particles were produced (4-15 g/h) by oxidation of hexamethyldisiloxane (HMDSO) in a coflow diffusion flame reactor. Their average primary particle size (10-50 nm) and degree of agglomeration were controlled by varying the oxygen and precursor flow rates. The particles were characterized by nitrogen adsorption, electron microscopy, and small-angle X-ray scattering. Hydrodynamic stresses break up soft agglomerates and yield hard agglomerate sizes in the range of 100-180 nm, as characterized by dynamic light scattering. Soft agglomerates exhibited decreasing light scattering diameters with increasing dispersion pressure, while hard agglomerates were insensitive.     

Rotational dynamics and conformational kinetics in liquid crystals

Two particular aspects of solute dynamics in ordered media are analysed on the basis of the solution of multivariate diffusion equations: the effects of the solvation dynamics on the rotational motions of dipolar probes in liquid crystal solvents, and the alteration of reaction pathways in isomerization kinetics caused by the solvent order. The introduction of a suitable solvent coordinate allows the interpretation of high frequency contributions in the rotational correlation functions observed by spectroscopic techniques, namely dielectric dispersion, IR and Raman spectroscopy, ESR lineshapes and optical Kerr effect. For molecular systems undergoing conformational changes, a method is offered to evaluate the modification of the torsional barriers resulting from the anisotropic torques modulated by the molecular shape changes along the reaction coordinate.     

Negative adsorption and liquid chromatography of polystyrene on silica

The main factors that determine negative adsorption of polymers have been considered. These are the preferred (positive) adsorption of the solvent molecules and the sieve effect during the interaction of macromolecules with a porous adsorbent. Modification of the silica surface, solvent polarity, and the size of the macromoleculer coils of polystyrene favor the negative sorption of polystyrene by porous silica and size-exclusion chromatography separation of macromolecules. The relations between the partition coefficient of a substance between the bulk and the adsorption phases and the excess values of retention, the capacity factor, and the adsorption coefficient (the Henry constant) are analyzed.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 9, pp. 2204–2208, September, 1996.     

Hydrogen bonding definitions and dynamics in liquid water

X-ray and neutron diffractions, vibrational spectroscopy, and x-ray Raman scattering and absorption experiments on water are often interpreted in terms of hydrogen bonding. To this end a number of geometric definitions of hydrogen bonding in water have been developed. While all definitions of hydrogen bonding are to some extent arbitrary, those involving one distance and one angle for a given water dimer are unnecessarily so. In this paper the authors develop a systematic procedure based on two-dimensional potentials of mean force for defining cutoffs for a given pair of distance and angular coordinates. They also develop an electronic structure-based definition of hydrogen bonding in liquid water, related to the electronic occupancy of the antibonding OH orbitals. This definition turns out to be reasonably compatible with one of the distance-angle geometric definitions. These two definitions lead to an estimate of the number of hydrogen bonds per molecule in liquid simple point charge/extended (SPC/E) water of between 3.2 and 3.4. They also used these and other hydrogen-bond definitions to examine the dynamics of local hydrogen-bond number fluctuations, finding an approximate long-time decay constant for SPC/E water of between 0.8 and 0.9 ps, which corresponds to the time scale for local structural relaxation.     

Rotational dynamics and conformational kinetics in liquid crystals

Abstract

Two particular aspects of solute dynamics in ordered media are analysed on the basis of the solution of multivariate diffusion equations: the effects of the solvation dynamics on the rotational motions of dipolar probes in liquid crystal solvents, and the alteration of reaction pathways in isomerization kinetics caused by the solvent order. The introduction of a suitable solvent coordinate allows the interpretation of high frequency contributions in the rotational correlation functions observed by spectroscopic techniques, namely dielectric dispersion, IR and Raman spectroscopy, ESR lineshapes and optical Kerr effect. For molecular systems undergoing conformational changes, a method is offered to evaluate the modification of the torsional barriers resulting from the anisotropic torques modulated by the molecular shape changes along the reaction coordinate.