Use of microcoil probehead for determination of the structure of oriented silk fibers by solid-state NMR

A microcoil probehead for solid-state NMR was developed with a two-channel radio-frequency circuit, and 13C observation with a proton-decoupling probehead was performed to obtain information on the distribution of the orientation of silk fibroin molecules in the fiber. The coil (1 mm (diameter) x 5 mm (length)) of the probehead was placed at the angles 90 degrees and 30 degrees , relative to the static magnetic field. Only 70 mug of [1-13C]Gly silk fibroin fiber was used in a magnet of 9.4 T (400 MHz for proton channel).     

Longitudinal (1)H relaxation optimization in TROSY NMR spectroscopy

A general method to enhance the sensitivity of the multidimensional NMR experiments performed at high-polarizing magnetic field via the significant reduction of the longitudinal proton relaxation times is described. The method is based on the use of two vast pools of "thermal bath" 1H spins residing on hydrogens covalently attached to carbon and oxygen atoms in 13C,15N labeled and fully protonated or fractionally deuterated proteins to uniformly enhance longitudinal relaxation of the 1HN spins and concomitantly the sensitivity of multipulse NMR experiments. The proposed longitudinal relaxation optimization is implemented in the 2D [15N,1H]-LTROSY, 2D [15N,1H]-LHSQC and 3D LTROSY-HNCA experiments yielding the factor 2-2.5 increase of the maximal signal-to-noise ratio per unit time at 600 MHz. At 900 MHz, the predicted decrease of the 1HN longitudinal relaxation times can be as large as one order of magnitude, making the proposed method an important tool for protein NMR at high magnetic fields.     

Automated Colorimetric Method for Total Cyanide in Water and Wastewater

Abstract

An automated benzidine-pyridine method for the analysis of total cyanide is described. Cyanides are converted to cyanogen bromide by the reaction with bromine water. Cyanogen bromide reacts with benzidine in a dilute pyridine medium to form an intense red color directly proportional to the cyanide concentration. Cyanide often is found complexed with metals. Complex iron cyanides such as ferrocyanide or ferricyanide are difficult to decompose, but the conversion is hastened with mercuric chloride and magnesium chloride in a modified Serfass distillation.¹

Hydrogen cyanide is readily formed and absorbed in sodium hydroxide.     

吹扫捕集气相色谱法分析土壤中熏蒸剂氰与氰化氢残留量

采用吹扫捕集气相色谱法建立了土壤中熏蒸剂氰和氰化氢的分析方法,对土壤中氰和氰化氢预处理的吹扫温度、吹扫时间和吹扫载气(N2)流速进行了优化。最佳吹扫参数为:以10%H2SO4溶液作溶剂、吹扫温度80℃、吹扫时间60 min和吹扫载气(N2)流速40 mL.min-1。氰和氰化氢在0.2～10 mg.L-1质量浓度范围内线性关系良好,相关系数(r2)分别为0.999 1和0.998 3。在优化条件下,土壤中氰和氰化氢的平均回收率分别为95%和96%,相对标准偏差分别为3.6%和5.2%,检出限(S/N=3)分别为0.012、0.021 mg.kg-1,定量下限(S/N=10)分别为0.040、0.070 mg.kg-1。用100 mg.kg-1氰熏蒸土壤48 h,氰及其降解产物氰化氢在土壤中的残留量分别为0.32 mg.kg-1和5.68 mg.kg-1。该方法简便快速,精密度与准确度均符合要求,适用于土壤中氰和氰化氢残留量的检测。     

Simultaneous determination of cyanide and carbonyls in cyanogenic plants by gas chromatography-electron capture/photoionization detection

A new method to simultaneously detect cyanide and carbonyl compounds arising from cyanogenic glycosides in plants is described. A portable gas chromatograph.housing two detectors using a single carrier gas is employed to measure the carbonyl compounds (photoionization detector) and cyanide as its cyanogen chloride derivative (electron capture detector) from the headspace of a plant sample. This method affords in-field, rapid screening of plants to determine cyanogenicity. Good agreement was seen between this method for cyanide determination and two traditional field cyanide test kits. Detection of both the cyanide and the carbonyl compound(s) allows for confirmation of the presence of cyanogenic glycosides and eliminates the problem of false positives often seen in traditional cyanide test kits. Gas phase limits of detection for cyanide, acetone, butanone, and benzaldehyde were 69, 41, 105, and 0.39 parts per billion by volume (ppbv), respectively, allowing sensitive detection of cyanogenic glycoside breakdown products. The method's utility for screening cyanogenic plants is demonstrated, and it should be useful for screening cyanogenic foodstuffs to determine suitability for consumption.     

New spot-test for cyanide ion and cyanogen gas

A new, rapid and simple spot test has been developed for detection of both cyanide ion and cyanogen gas. The cyanogen gas must first be converted into cyanide ion by reaction with sodium hydroxide. On addition of a Cu(II) solution the cyanocuprate(I) complex formed reduces the molybdate solution to molybdenum blue.     

Carbon-13 chemical shift anisotropy in DNA bases from field dependence of solution NMR relaxation rates

Knowledge of (13)C chemical shift anisotropy (CSA) in nucleotide bases is important for the interpretation of solution-state NMR relaxation data in terms of local dynamic properties of DNA and RNA. Accurate knowledge of the CSA becomes particularly important at high magnetic fields, prerequisite for adequate spectral resolution in larger oligonucleotides. Measurement of (13)C relaxation rates of protonated carbons in the bases of the so-called Dickerson dodecamer, d(CGCGAATTCGCG)(2), at 500 and 800 MHz (1)H frequency, together with the previously characterized structure and diffusion tensor yields CSA values for C5 in C, C6 in C and T, C8 in A and G, and C2 in A that are closest to values previously reported on the basis of solid-state FIREMAT NMR measurements, and mostly larger than values obtained by in vacuo DFT calculations. Owing to the noncollinearity of dipolar and CSA interactions, interpretation of the NMR relaxation rates is particularly sensitive to anisotropy of rotational diffusion, and use of isotropic diffusion models can result in considerable errors.     

The first precise molecular structure of a monomeric transition metal cyanide,copper(I) cyanide

Copper(I) cyanide is an important reagent in organic, organometallic, and supramolecular chemistry because of both the copper center and the versatile cyanide ligand. Solid-phase CuCN and many of its derivatives show oligomeric or polymeric structures, a trait shared by other metal cyanides. Often, it is difficult to specify the orientation of the cyano ligand in an X-ray structure. Here the first preparation and precise structure of a monomeric transition metal cyanide is reported. Gas-phase reaction between copper vapor and cyanogen (NCCN) clearly gives CuCN (not CuNC). The precise structure of CuCN so produced is determined by millimeter/submillimeter-wave spectroscopy. Because of the highly efficient synthesis and the presence of significant amounts of two copper isotopes, such strong signals were seen that natural-abundance materials allowed observation of transitions for the four isotopomers (63)Cu(12)C(14)N, (65)Cu(12)C(14)N, (63)Cu(13)C(14)N, and (63)Cu(12)C(15)N and the determination of r(o), r(s), and r(m)((2)) structures. All data unequivocally show a linear geometry and that the carbon of cyanide is bound to copper with a Cu-C distance of 1.82962(4) A in the r(m)((2)) structure, which is likely to be closest to the equilibrium geometry.     

First total synthesis of two new heterocyclic compounds:Bretschneiderazines A and B

Facile synthesis of the two new natural heterocyclic compounds bretschneiderazines A（2） and B（3）,isolated from an extract of the stems of Bretschneidera sinensis,is reported.We employed the cyclization reaction of benzamide by directed lithiation and sequential treatment with sulfur and phosgene as key steps.All new compounds have been fully characterized by means of IR,¹H NMR,¹³C NMR,and HRMS.     

Deuterium quantification through deuterium-induced remote 1H and 13C NMR shifts

Partial labeling by deuterium may be quantified through simple integrations of those (1)H (200 or 400?MHz) and (13)C (100.6?MHz) NMR resonances that are split into pairs by chemical shifts (n)Δ = δ(deuterated) - δ(nondeuterated) as induced by deuterium across n>2 chemical bonds. The relative intensities of the two components of a pair are shown to be influenced to practically equal degrees by relaxation effects, so that a deuterium fraction may be determined from (1)H and (13)C integral pairs at more remote molecular positions under the routine conditions of fast accumulative spectral acquisition.     

Nuclear magnetic relaxation of α-13C nuclei of helical poly(γ-hexyl-L-glutamate) and poly(γ-benzyl-L-glutamate)

Spin-lattice relaxation times (T₁), spin-spin relaxation times (T₂), and nuclear Overhauser enhancements (NOE), at 75.5 MHz are reported for α-¹³C nuclei of poly (γ-benzyl-L -glutamate) in deuterated dimethylformamide at 60°C and of poly(γ-hexyl-L -glutamate) in cyclohexanone at 48 and 79°C. It is shown that for molecular weights above 10⁵, the polypeptides cannot be considered as essentially rigid helices with internal librational motions; additional backbone flexing motions contribute to the relaxation behavior.     

1,2-聚丁二烯~(13)C-NMR弛豫的溶剂效应

本文测定了一系列具有不同微观结构的1,2-聚丁二烯样品在四种溶剂的50.3MHz ~(13)C自旋-晶格弛豫时间(T_1)和核Overhauser效应(NOE)值。并用Schaefer logx~2相关时间分布模型对实验数据进行了拟合。研究了1,2-聚丁二烯在溶液中的~(13)C-NMR弛豫的溶剂效应及其与结构的关系。发现聚合物与溶剂的溶解度参数之差△δ越大,聚合物在溶液中协同链段运动趋向越明显,~(13)C自旋-晶格弛豫速率(1/T_1)越大;1,2-链节较少,分子链较柔顺时,~(13)C-NMR弛豫受溶剂影响较显著。NMR弛豫参数对结构变化的反应在良溶剂中比在不良溶剂中敏感。     

HPLC-SPE-NMR hyphenation in natural products research: optimization of analysis of Croton membranaceus extract

The HPLC-SPE-NMR technique was used for the analysis of a root-bark extract of Croton membranaceus. The components of the extract were separated on an analytical-size reversed-phase HPLC column, the chromatographic peaks were trapped on SPE (solid-phase extraction) cartridges after post-column dilution of the eluate with water and the compounds were eluted from the cartridges with acetonitrile-d(3) into a 30 microl 600 MHz NMR probe in a fully automated procedure. The trapping efficiency of scopoletin (1), the major extract constituent, was much higher on a GP (general phase, a polystyrene-type polymer) SPE phase than on a C18 phase. Thus, under the conditions used, up to 100 microg of scopoletin per cartridge could be accumulated linearly after repeated trappings. The maximum achievable NMR signal-to-noise ratio using the GP cartridges was at least four times higher than that achievable with the C18 cartridges. It was shown that excessively long T(1) relaxation times may compromise experiments in which acetonitrile-d(3) is used as the cartridge eluent. Nevertheless, the sensitivity gain provided by the HPLC-SPE-NMR technique through repeated peak trappings allowed the acquisition of good-quality proton-detected 2D NMR spectra without the need for solvent suppression.     

Wasserstoffbrückenbindungen mit Cyanidionen? Die Strukturen von 1,3‐Diisopropyl‐4,5‐dimethylimidazoliumcyanid und 1‐Isopropyl‐3,4,5‐trimethylimidazoliumcyanid

Hydrogen Bonds with Cyanide Ions? The Structures of 1,3‐Diisopropyl‐4,5‐dimethylimidazolium Cyanide and 1‐Isopropyl‐3,4,5‐trimethylimidazolium Cyanide 1,3‐Diisopropyl‐4,5‐dimethylimidazolium cyanide ( 2a ) and 1‐isopropyl‐3,4,5‐trimethylimidazolium cyanide ( 2b ) are obtained from the reaction of the corresponding 2,3‐dihydrodimethylimidazol‐2‐ylidenes ( 1 ) and hydrogen cyanide in excellent yield. Their crystal structure analyses reveal the presence of ion pairs linked by hydrogen bonds. The crystal structure analysis of 2a reveals a near colinear orientation of the C(1)‐H bond axis and the cyanide ion while in 2b this orientation is perpendicular. In both cases, the interionic distances are in the expected range for hydrogen bonds. Ab‐initio calculations of the total energy of the salts 2 indicate small differences in energy between the colinear and perpendicular orientation of the ions as well as between the colinear C‐H···C‐N and C‐H···N‐C orientations. The comparison of calculated and measured ¹³C and ¹⁵N NMR chemical shifts does not allow the distinction between the possible orientations.     

An efficient potassium cyanide-promoted synthesis of 2-arylbenzoxazoles from [4.3.0]boron heterobicycles

The 2-arylbenzoxazoles 3a-f were produced in moderate to excellent yields merely by stirring a potassium cyanide (3 equiv)-containing methanol solution of the borobicyclic compounds 1a-f at room temperature. These compounds were fully characterized spectroscopically [IR, ¹H, and ¹³C NMR and X-ray analysis (3a)] and by elemental analysis.     

Asensitive,Selective, and Rapid Colorimetric Method to Determine Cyanide Contamination in Containers,Capsules, and Liquids

Abstract

A new formulation of the Konig colorimetric method for cyanide is selective, has increased stability, and is sensitive to a few ppb. The formulation can be placed as a strip on the safety seals of bottles to indicate tampering, placed in a syringe and used to sample head space gas in commercial products or liquids to test for tampering, or placed in the desiccant container in bottles of capsules or tablets. Reaction with head space gas requires just a few seconds, and less than an hour is required if the cyanide must first permeate through capsules. Liquids also can be either drawn directly into the syringe, or the cyanide evolved by adding an Alka-seltzer tablet to purge the gas. Reactions are immediate. Hydrogen sulfide and ammonia which interfere with several other cyanide tests, do not interfere with this formulation. A mixture of N-chlorosuccinimide and succinimide oxidizes CN^- to CN⁺. The cyanogen ion selectively reacts with 4-phenylpyridine to form a dialdehyde, which is then coupled with either barbituric acid (red rapidly turning to blue) or 3-methyl-l-phenyl-2-pyrazolin-5-one (purple slowly turning to green black).     

Interaction of the human prion PrP(106-126) sequence with copper(II), manganese(II), and zinc(II): NMR and EPR studies

The synthetic peptide encompassing residues 106-126 (PrP106-126, KTNMKHMAGAAAAGAVVGGLG) of the human prion protein was considered for its binding properties toward copper(II), manganese(II) and zinc(II) at pH 5.7. 1H and 13C 1D spectra, 1H spin-lattice relaxation rates, and 1H-15N and 1H-13C HSQC 2D experiments were obtained in the absence and in the presence of metal ions. While Zn(II) was found to yield negligible effects upon any NMR parameter, metal-peptide association was demonstrated by the paramagnetic effects of Cu(II) and Mn(II) upon 1D and 2D spectra. Delineation of structures of metal complexes was sought by interpreting the paramagnetic effect on 1H spin-lattice relaxation rates. Exchange of peptide molecules from the metal coordination sphere was shown to provide sizable contribution to the observed relaxation rates. Such contribution was calculated in the case of Cu(II); whereas the faster paramagnetic rates of peptide molecules bound to Mn(II) were determining spin-lattice relaxation rates almost exclusively dominated by exchange. Proton-metal distances were therefore evaluated in the case of the Cu(II) complex only and used as restraints in molecular dynamics calculations where from the structure of the complex was obtained. The peptide was shown to bind copper through the imidazole nitrogen and the ionized amide nitrogen of His-111 and the amino-terminal group with the terminal carboxyl stabilizing the coordination sphere through ionic interactions. The data were interpreted as to demonstrate that the hydrophobic C-terminal region was not affecting the copper-binding properties of the peptide and that this hydrophobic tail is left free to interact with other target molecules. As for the complex with Mn(II), qualitative information was obtained on carbonyl oxygens of Gly-124 and Leu-125, beyond the terminal Gly-126 carboxyl, being at close distance from the metal ion, that also interacts, most likely, through a hydrogen bond of metal-bound water, with the imidazole ring of His-111.     

1,2,4-Triazino[4,3-c]- and [2,3-c]quinazolines. II

This paper describes the results of allowing a variety of reagents, such as, aldehydes, ketones, carboxylic acids, acid chlorides, ortho esters, isocyanates, S-methylisothiourea, carbon disulfide, phosgene, nitrous acid, and cyanogen bromide to react with the multifunctional compound, 3-(o-aminophenyl)-1-methyl-1,4,5,6-tetrahydro-1,2,4-triazine.     

Paracyanogen reexamined

Samples of paracyanogen were prepared by the pyrolysis of silver cyanide, the photolysis of cyanogen, and by sputtering a carbon electrode in a nitrogen plasma. This work was undertaken to establish whether these materials are alike and to derive structural information on the basis of FT-IR, ¹³C-MAS—NMR, and through temperature-programmed thermal decomposition. Paracyanogen derived from the above sources is indeed alike spectrally and thermally. Paracyanogen is a polymer that incorporates carbon, mostly sp², and nitrogen in a disordered structure. Cyanogen is the main volatile component released in the thermal decomposition of paracyanogen. The cyanogen released was identified by FT-IR and MS. The rate of release reaches a maximum at ca. 700°C. Paracyanogen is not an appropriate carbon nitride precursor because of its limited thermal stability. © 1993 John Wiley & Sons, Inc.     

Transgenic approaches for cyanogen reduction in cassava

For cassava to become a safe and acceptable crop, it is necessary to reduce the cyanogen levels in cassava foods. While this objective can be achieved by processing procedures, recent findings have shown that it is also possible to achieve it by suppression of cyanogen synthesis or by accelerating cyanogen turnover and volatilization. In 2003, cyanogen-free cultivars were generated by selective inhibition CYP79D1/D2 gene expression. The CYP79D1/D2 enzymes catalyze the first-dedicated step in cyanogen synthesis. Tissue-specific inhibition of CYP79D1/D2 expression in leaves lead to a 99% reduction in root cyanogen levels, indicating that the cyanogenic glycoside, linamarin, is synthesized in leaves and transported to roots. An alternative strategy to the reduce cyanogen content is to enhance cyanogen detoxification and cyanide volatilization during processing. This strategy has the advantage that cyanogen levels in unprocessed roots are not altered, potentially providing protection against herbivory andlor theft. To produce cultivars that promote rapid cyanide volatilization, hydroxynitrile lyase (HNL), which catalyzes the last step in cyanogenesis, was overexpressed in roots. Elevated HNL activity resulted in a 3-fold increase in the rate of cyanogen turnover. Importantly, the cyanogen content of the transformed and wild-type plants was identical, a potential benefit for farmers.