Nonlinear competition between asters and stripes in filament-motor systems

A model for polar filaments interacting via molecular motor complexes is investigated which exhibits bifurcations to spatial patterns. It is shown that the homogeneous distribution of filaments, such as actin or microtubules, may become either unstable with respect to an orientational instability of a finite wave number or with respect to modulations of the filament density, where long-wavelength modes are amplified as well. Above threshold nonlinear interactions select either stripe patterns or periodic asters. The existence and stability ranges of each pattern close to threshold are predicted in terms of a weakly nonlinear perturbation analysis, which is confirmed by numerical simulations of the basic model equations. The two relevant parameters determining the bifurcation scenario of the model can be related to the concentrations of the active molecular motors and of the filaments, respectively, which both could be easily regulated by the cell.     

Dispersion of multi-stream instability in quantum magnetized hot plasmas

Using the quantum hydrodynamic (QHD) equations with magnetic field on the Wigner-Maxwell system, the general dielectric tensor and dispersion equation for quantum plasmas were derived. Dispersion relations of one-, two-stream and beam-plasma instabilities in uniform quantum magnetized plasmas are investigated through the new dielectric tensor. The magnetic field which is parallel to the fluid velocity does not work on stream instabilities. The quantum and thermal effects have remarkable impact on two-stream instability. The critical wave number for beam-plasma instability with quantum effects correction is given too.     

Electroconvection in nematics above the splay Fréedericksz transition

We present a basic model for an instability leading to a novel type of electroconvection patterns observed above the splay Fréedericksz transition in nematics. Such patterns, with wave vector perpendicular to the director easy axis, are found in planar sandwich cells under crossed polarizers, they do not produce shadowgraph images at onset. An adaptation of the classical Carr Helfrich mechanism is introduced. The ground state is a tilted director field uniform in the cell plane. The proposed mechanism destabilizes this director field and leads to a structure with modulated out-of-plane (twist) deformations. Experimental confirmation is provided by polarizing microscopy. All experimental observations are qualitatively explained with the proposed model.     

Temperature effects on capillary instabilities in a thin nematic liquid crystalline fiber embedded in a viscous matrix

Linear stability analysis of capillary instabilities in a thin nematic liquid crystalline cylindrical fiber embedded in an immiscible viscous matrix is performed by formulating and solving the governing nemato-capillary equations, that include the effect of temperature on the nematic ordering as well as the effect of the nematic orientation. A representative axial nematic orientation texture with the planar easy axis at the fiber surface is studied. The surface disturbance is expressed in normal modes, which include the azimuthal wave number m to take into account non-axisymmetric modes. Capillary instabilities in nematic fibers reflect the anisotropic nature of liquid crystals, such as the ordering and orientation contributions to the surface elasticity and surface normal and bending stresses. Surface gradients of normal and bending stresses provide additional anisotropic contributions to the capillary pressure that may renormalize the classical displacement and curvature forces that exist in any fluid fiber. The exact nature (stabilizing and destabilizing) and magnitude of the renormalization of the displacement and curvature forces depend on the nematic ordering and orientation, i.e. the anisotropic contribution to the surface energy, and accordingly capillary instabilities may be axisymmetric or non-axisymmetric. In addition, when the interface curvature effects are accounted for as contributions of the work of interfacial bending and torsion to the total energy of the system, the higher-order bending moment contribution to the surface stress tensor is critical in stabilizing the fiber instabilities. For the planar easy axis, the nematic ordering contribution to the surface energy, which renormalizes the effect of the fiber shape, plays a crucial role to determine the instability mechanisms. Moreover, the unstable modes, which are most likely observed, can be driven by the dependence of surface energy on the surface area. Low-ordering fibers display the classical axisymmetric mode, since the surface energy decreases by decreasing the surface area. Decreasing temperature gives rise to the encounter with a local maximum or to monotonic increase of the characteristic length of the axisymmetric mode. Meanwhile, in the presence of high surface ordering, non-axisymmetric finite wavelength instabilities emerge, with higher modes growing faster since the surface energy decreases by increasing the surface area. As temperature decreases, the pitches of the chiral microstructures become smaller. However, this non-axisymmetric instability mechanism can be regulated by taking account of the surface bending moment, which contains higher order variations in the interface curvatures. More and more non-axisymmetric modes emerge as temperature decreases, but, at constant temperature, only a finite number of non-axisymmetric modes are unstable and a single fastest growing mode emerges with lower and higher unstable modes growing slower. For nematic fibers, the classical fiber-to-droplet transformation is one of several possible instability pathways, while others include chiral microstructures. The capillary instabilities' growth rate of a thin nematic fiber in a viscous matrix is suppressed by increasing either the fiber or matrix viscosity, but the estimated droplet sizes after fiber breakup in axisymmetric instabilities decrease with increasing the matrix viscosity. Received 15 April 2002 and Received in final form 3 October 2002 RID="a" ID="a"e-mail: alejandro.rey@mcgill.ca     

On the types of instability of spatially restricted systems

A classification of instabilities in spatially restricted systems is presented, which generalizes a classification considered in book [1]. It is shown that, if a system has no active boundaries and the waves are not amplified in an infinite homogeneous medium, which corresponds to the absence of solutions of the dispersion equation with the negative imaginary part of the wave vector at the real frequency, then only nonamplified instabilities with a nonlocal resonance can be developed. The development of nonamplified instability is considered in a spatially restricted system through which a flux propagates, when along with natural waves the excitation of the waves of fluxes playing a key role in the development of the instability is taken into account.     

Acoustic scattering of a high-order Bessel beam by an elastic sphere

The exact analytical solution for the scattering of a generalized (or “hollow”) acoustic Bessel beam in water by an elastic sphere centered on the beam is presented. The far-field acoustic scattering field is expressed as a partial wave series involving the scattering angle relative to the beam axis and the half-conical angle of the wave vector components of the generalized Bessel beam. The sphere is assumed to have isotropic elastic material properties so that the nth partial wave amplitude for plane wave scattering is proportional to a known partial-wave coefficient. The transverse acoustic scattering field is investigated versus the dimensionless parameter ka(k is the wave vector, a radius of the sphere) as well as the polar angle θ for a specific dimensionless frequency and half-cone angle β. For higher-order generalized beams, the acoustic scattering vanishes in the backward (θ = π) and forward (θ = 0) directions along the beam axis. Moreover it is possible to suppress the excitation of certain resonances of an elastic sphere by appropriate selection of the generalized Bessel beam parameters.     

Dissipative instabilities in a mesospheric plasma with the aerosol charging processes taken into account

We consider dissipative instabilities of a flow of large aerosol particles as a possible mechanism for generation of electric-field and charged-particle density irregularities in the middle atmosphere. A dispersion equation describing the properties of the spectral component of a quasistatic electric field with allowance for the aerosol charging inertia and external stationary electric field is obtained. The equation is used to study characteristics of two possible instabilities, namely, the instability of a dust-acoustic mode and the instability of an additional low-frequency mode stimulated by the charging inertia. Dependences of the growth rates of both instabilities on the parameters of the medium and the external stationary electric field are obtained. Quantitative estimates for the parameters of the aerosol, ion, and electron components and external factors that are necessary for the excitation of instabilities in the region of the existence of summer polar mesospheric echo, as well as those for spatial scales of unstable perturbations, are given.     

Quasi Exact Model for the Anisotropy Driven Weibel Instability all over Fourier Space

The Weibel instability is prompted by a temperature anisotropy within a plasma. We investigate its growth rate for wave vectors making an arbitrary angle with the high temperature axis. We use a two temperatures waterbags model and derive stability conditions depending on both temperatures and wave vector orientation. It is found that the growth rate is maximum for wave vectors normal to the high temperature axis. Also, a critical angle is evidenced in the k space in which direction modes are unstable at high k although the growth rate decreases quickly in this direction. Exact results are derived in most cases. (© 2007 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Propagation dynamics of relativistic electromagnetic solitary wave as well as modulational instability in plasmas

By one-dimensional particle-in-cell(PIC) simulations, the propagation and stability of relativistic electromagnetic(EM) solitary waves as well as modulational instability of plane EM waves are studied in uniform cold electron-ion plasmas.The investigation not only confirms the solitary wave motion characteristics and modulational instability theory, but more importantly, gives the following findings. For a simulation with the plasma density 10²³ m^-3 and the dimensionless vector potential amplitude 0.18, it is found that the EM solitary wave can stably propagate when the carrier wave frequency is smaller than 3.83 times of the plasma frequency. While for the carrier wave frequency larger than that, it can excite a very weak Langmuir oscillation, which is an order of magnitude smaller than the transverse electron momentum and may in turn modulate the EM solitary wave and cause the modulational instability, so that the solitary wave begins to deform after a long enough distance propagation. The stable propagation distance before an obvious observation of instability increases(decreases) with the increase of the carrier wave frequency(vector potential amplitude). The study on the plane EM wave shows that a modulational instability may occur and its wavenumber is approximately equal to the modulational wavenumber by Langmuir oscillation and is independent of the carrier wave frequency and the vector potential amplitude.This reveals the role of the Langmuir oscillation excitation in the inducement of modulational instability and also proves the modulational instability of EM solitary wave.     

Stability of superflow for ultracold fermions in optical lattices

We investigate the stability of superflow of paired fermions in an optical lattice. We show that there are two distinct dynamical instabilities which limit the superflow in this system. One dynamical instability occurs when the superfluid stiffness becomes negative; this evolves, with increasing pairing interaction, from the fermion pair breaking instability to the well-known dynamical instability of lattice bosons. The second, more interesting, dynamical instability is marked by the emergence of a transient atom density wave. Both dynamical instabilities can be experimentally accessed by tuning the pairing interaction and the fermion density.     

Eddy diffusivity in convective hydromagnetic systems

An eigenvalue equation, for linear instability modes involving large scales in a convective hydromagnetic system, is derived in the framework of multiscale analysis. We consider a horizontal layer with electrically conducting boundaries, kept at fixed temperatures and with free surface boundary conditions for the velocity field; periodicity in horizontal directions is assumed. The steady states must be stable to short (fast) scale perturbations and possess symmetry about the vertical axis, allowing instabilities involving large (slow) scales to develop. We expand the modes and their growth rates in power series in the scale separation parameter and obtain a hierarchy of equations, which are solved numerically. Second order solvability condition yields a closed equation for the leading terms of the asymptotic expansions and respective growth rate, whose origin is in the (combined) eddy diffusivity phenomenon. For about 10% of randomly generated steady convective hydromagnetic regimes, negative eddy diffusivity is found.     

Polarity patterns of stress fibers

Stress fibers are contractile actomyosin bundles commonly observed in the cytoskeleton of metazoan cells. The spatial profile of the polarity of actin filaments inside contractile actomyosin bundles is either monotonic (graded) or periodic (alternating). In the framework of linear irreversible thermodynamics, we write the constitutive equations for a polar, active, elastic one-dimensional medium. An analysis of the resulting equations for the dynamics of polarity shows that the transition from graded to alternating polarity patterns is a nonequilibrium Lifshitz point. Active contractility is a necessary condition for the emergence of sarcomeric, alternating polarity patterns.     

Spin damping correction to electrostatic modes in kinetic plasma theory

The effect of spin of particles is studied using a semi-classical kinetic theory for a magnetized plasma. No other quantum effects are included. We focus in the simple damping effects for the electrostatic wave modes. Besides Landau damping, we show that spin produces two new different effects of damping or instability which are proportional to ?. These corrections depend on the electromagnetic part of the wave that is coupled with the spin vector.     

Parametric instabilities in single-walled carbon nanotubes

Parametric instabilities induced by the coupling excitation between the high frequency quantum Langmuir waves and the low frequency quantum ion-acoustic waves in single-walled carbon nanotubes are studied with a quantum Zakharov model. By linearizing the quantum hydrodynamic equations, we get the dispersion relations for the high frequency quantum Langmuir wave and the low frequency quantum ion-acoustic wave. Using two-time scale method, we obtain the quantum Zaharov model in the cylindrical coordinates. Decay instability and four-wave instability are discussed in detail. It is shown that the carbon nanotube＇s radius, the equilibrium discrete azimuthal quantum number, the perturbed discrete azimuthal quantum number, and the quantum parameter all play a crucial role in the instabilities.     

Wilson's renormalization group applied to 2D lattice electrons in the presence of van Hove singularities

The weak coupling instabilities of a two dimensional Fermi system are investigated for the case of a square lattice using a Wilson renormalization group scheme to one loop order. We focus on a situation where the Fermi surface passes through two saddle points of the single particle dispersion. In the case of perfect nesting, the dominant instability is a spin density wave but d-wave superconductivity as well as charge or spin flux phases are also obtained in certain regions in the space of coupling parameters. The low energy regime in the vicinity of these instabilities can be studied analytically. Although saddle points play a major role (through their large contribution to the single particle density of states), the presence of low energy excitations along the Fermi surface rather than at isolated points is crucial and leads to an asymptotic decoupling of the various instabilities. This suggests a more mean-field like picture of these instabilities, than the one recently established by numerical studies using discretized Fermi surfaces. Received 11 April 2001 and Received in final form 6 September 2001     

Dynamic supercoiling bifurcations of growing elastic filaments

Certain bacteria form filamentous colonies when the cells fail to separate after dividing. In Bacillus subtilis, Bacillus thermus, and Cyanobacteria, the filaments can wrap into complex supercoiled structures as the cells grow. The structures may be solenoids or plectonemes, with or without branches in the latter case. Any microscopic theory of these morphological instabilities must address the nature of pattern selection in the presence of growth, for growth renders the problem nonautonomous and the bifurcations dynamic. To gain insight into these phenomena, we formulate a general theory for growing elastic filaments with bending and twisting resistance in a viscous medium, and study an illustrative model problem: a growing filament with preferred twist, closed into a loop. Growth depletes the twist, inducing a twist strain. The closure of the loop prevents the filament from unwinding back to the preferred twist; instead, twist relaxation is accomplished by the formation of supercoils. Growth also produces viscous stresses on the filament which even in the absence of twist produce buckling instabilities. Our linear stability analysis and numerical studies reveal two dynamic regimes. For small intrinsic twist the instability is akin to Euler buckling, leading to solenoidal structures, while for large twist it is like the classic writhing of a twisted filament, producing plectonemic windings. This model may apply to situations in which supercoils form only, or more readily, when axial rotation of filaments is blocked. Applications to specific biological systems are proposed.     

Standing wave instabilities, breather formation and thermalization in a Hamiltonian anharmonic lattice

Modulational instability of travelling plane waves is often considered as the first step in the formation of intrinsically localized modes (discrete breathers) in anharmonic lattices. Here, we consider an alternative mechanism for breather formation, originating in oscillatory instabilities of spatially periodic or quasiperiodic nonlinear standing waves (SWs). These SWs are constructed for Klein-Gordon or Discrete Nonlinear Schr?dinger lattices as exact time periodic and time reversible multibreather solutions from the limit of uncoupled oscillators, and merge into harmonic SWs in the small-amplitude limit. Approaching the linear limit, all SWs with nontrivial wave vectors (0 < Q < π) become unstable through oscillatory instabilities, persisting for arbitrarily small amplitudes in infinite lattices. The dynamics resulting from these instabilities is found to be qualitatively different for wave vectors smaller than or larger than π/2, respectively. In one regime persisting breathers are found, while in the other regime the system thermalizes. Received 6 October 2001 / Received in final form 1st March 2002 Published online 2 October 2002 RID="a" ID="a"e-mail: mjn@ifm.liu.se     

Kinetic Theory of Inhomogeneous Plasmas Situated in RE Fields

The stability effect that an RF electric field imposes on drift instabilities in a magnetized plasma, inhomogeneous in density and temperature, is investigated in the kinetic approximation, taking account of the finite ion Larmor radii. Stabilization of drift instabilities is examined in three frequency ranges:?/k? < ?th,i, ?th,i < ?/k? < ?th,e, and ?/k? > ?th,e, where k? is the component of the wave vector parallel to the applied dc magnetic field, and ?th, e and ?th, i are the electron and ion thermal speeds, respectively. It is found that stabilization is most effective for the medium phase-velocity range, where the drift instability, driven by streaming electrons, is strongest and sensitive to the ratio Ln/LT, where Ln and LT are the density and temperature gradient scale lengths, respectively.     

Scattering of shaped beam by a conducting infinite cylinder with dielectric coating

Based on the generalized Lorenz–Mie theory (GLMT), which provides the general framework and expansion of the incident shaped beam in terms of cylindrical vector wave functions, an analytic solution to the electromagnetic scattering by coated infinite cylinders is constructed for arbitrary incidence of a shaped beam. As an example, for a tightly focused Gaussian beam propagating perpendicularly to the cylinder axis, the scattering characteristics that obviously demonstrate the three-dimensional nature are described in detail, and numerical results of the normalized differential scattering cross section are evaluated.     

Experimental evidence of a non-relationship between photorefractive inhibition and photoconductivity increase in LiNbO3:Mg

By means of measurements of both photoconductivity and two-wave mixing using cw 532 nm laser light, a direct relationship between optical damage resistance and photoconductivity coefficient for several congruent magnesium-doped lithium niobate crystals, with concentrations below and above the threshold of around 4.6 mol% MgO in melt, has not been observed. Specifically, when the polar axis is parallel to the photorefractive grating vector formed by two-interference beams, an increase of optical-damage resistance above the threshold is obtained. However, the photoconductivity coefficient is of the same magnitude of those samples below the threshold. On the other hand, when the optical axis is perpendicular to the grating vector, a decrease of the refractive index grating for crystals below the threshold could be observed, but even for this case the photoconductivity coefficient is unchanged, except for only one specimen with high magnesium level which exhibits simultaneously photorefractive response and high photoconductivity. These results suggest that the increase of photoconductivity is not very essential in the process of photorefractive inhibition; rather, the distribution of magnesium ions with respect to polar axis is an important parameter in the mechanism of optical-damage resistance.