Water clusters on Cu(110): chain versus cyclic structures

Water clusters are assembled and imaged on Cu(110) by using a scanning tunneling microscope. Water molecules are arranged along the Cu row to form "ferroelectric" zigzag chains of trimer to hexamer. The trimer prefers the chain form to a cyclic one in spite of the reduced number of hydrogen bonds, highlighting the crucial role of the water-substrate interaction in the clustering of adsorbed water molecules. On the other hand, the cyclic form with maximal hydrogen bonds becomes more favorable for the tetramer, indicating the crossover from chain to cyclic configurations as the constituent number increases.     

Hydrogen bonding and the self-assembly of supramolecular liquid-crystalline materials

Novel supramolecular liquid-crystalline materials have been obtained by the hydrogen bond formation between different and independent molecules. The self-assembly of carboxylic acid and pyridine moieties that function as H-bond donors and acceptors, respectively, results in the formation of mesogenic complex structures. A wide variety of liquid-crystalline low molecular weight complexes have been prepared using this approach. This concept has been extended to the polymeric systems. Hydrogen-bonded liquid-crystalline polymers that exhibit mesophases over wide temperature ranges, ferroelectricity or photo-responsibility have been prepared by the molecular association. Moreover, liquid-crystalline polymer networks that show reversible smectic-isotropic phase transitions have been formed by the hydrogen bonds. The dynamics of the hydrogen bonding may contribute to the induction of the mesomorphism of the networks.     

Structure and bonding of the multifunctional amino acid L-DOPA on Au(110)

In investigations of the proteins which are responsible for the surface adhesion of the blue mussel Mytilus edulis, an unusually frequent appearance of the otherwise rare amino acid 3-(3,4-dihydroxyphenyl)-L-alanine (L-DOPA) has been observed. This amino acid is thought to play a major role in the mechanism of mussel adhesion. Here we report a detailed structural and spectroscopic investigation of the interface between L-DOPA and a single-crystalline Au(110) model surface, with the aim of understanding fundamentals about the surface bonding of this amino acid and its role in mussel adhesion. Molecular layers are deposited by organic molecular beam deposition (OMBD) in an ultrahigh-vacuum environment. The following experimental techniques have been applied: ex situ Fourier transform infrared spectroscopy (FTIR), X-ray photoelectron spectroscopy (XPS), low-energy electron diffraction (LEED), high-resolution electron energy loss spectroscopy (HREELS), and scanning tunneling microscopy (STM). Vibrational spectra of isolated L-DOPA molecules and the zwitterionic bulk have been calculated using density functional theory (DFT). The predicted modes are assigned to observed spectra, allowing conclusions regarding the molecule-substrate and molecule-molecule interactions at the L-DOPA/Au(110) interface. We find that zwitterionic L-DOPA forms a monochiral, one-domain commensurate monolayer on Au(110), with the catechol rings on top of [110] gold rows, oriented parallel to the surface. The (2 x 1)-Au(110) surface reconstruction is not lifted. The carboxylate group is found in a bidentate or bridging configuration, the amino group is tilted out of the surface plane, and the hydroxyl groups do not dehydrogenate on Au(110). Similar to the case for the bulk, molecules form dimers on Au(110). However, the number of hydrogen bridge bonds between L-DOPA molecules is reduced as compared to the bulk. Thicker layers which are deposited onto the commensurate interface do not order in the bulk structure. In conclusion, our study shows that the aromatic ring system of L-DOPA functions as a surface anchor. Since it is also known that the hydroxyl groups support cross-link reactions between L-DOPA residues in the mussel glue protein, we can conclude that the catechol ring supports surface adhesion of mussel proteins via two independent functions.     

Edge-on bonding of benzene molecules in the second adsorbed layer on Cu(110)

The bilayer of benzene on Cu(110) was studied with temperature-programmed desorption (TPD), time-of-flight electron stimulated desorption ion angular distribution (TOF-ESDIAD), and scanning tunneling microscopy (STM). TPD spectra show that three well-defined adsorption states exist. The alpha layer corresponds to the first layer containing flat-lying benzene molecules. As coverage increases, the beta layer forms on top of the alpha layer, and eventually, a multilayer, gamma, forms. TPD measurements show that the number of benzene molecules in the beta layer is equal to the number of benzene molecules in the alpha layer. ESDIAD measurements establish that the orientation of the benzene molecules in the beta layer is edge-on, with two C-H bonds directed toward the surface. STM images of the beta layer reveal closely spaced edge-on benzene molecules arranged in repeating hexagons, as well as loosely spaced benzene molecules with greater apparent height, which are also edge-on species. Correlation between the different measurements suggests a structural model for the benzene bilayer.     

HCOO在Cu(110)、Ag(110)和Au(110)表面的吸附

采用密度泛函理论(DFT)以及广义梯度近似方法(GGA)计算了甲酸根(HCOO)在Cu(110)、Ag(110)和Au(110)表面的吸附. 计算结果表明, 短桥位是最稳定的吸附位置, 计算的几何参数与以前的实验和计算结果吻合. 吸附热顺序为Cu(110)(-116 kJ·mol-1)>Ag(110)(-57 kJ·mol-1)>Au(110)(-27 kJ·mol-1), 与实验上甲酸根的分解温度相一致. 电子态密度分析表明, 吸附热顺序可以用吸附分子与金属d-带之间的Pauli 排斥来关联, 即排斥作用越大, 吸附越弱. 另外还从计算的吸附热数据以及实验上HCOO的分解温度估算了反应CO2+1/2H2→HCOO的活化能, 其大小顺序为Au(110)>Ag(110)>Cu(110).     

原子H在Cu(100)(111)(110)上的吸附扩散研究

采用5-MP势方法,对原子氢在金属Cu的3个低指数面上的吸附特性,如吸附几何、吸附能、振动频率等以及吸附扩散势能面结构进行了比较系统的研究,计算结果显示低温低覆盖条件下,氢原子在Cu(110)表面上只存在赝式三重位和长桥位吸附态,没有短桥位吸附态,并且获得了实验和理论的支持.     

Sensing and photocatalytic properties of nanosized Cu(I)CN organotin supramolecular coordination polymer based on pyrazine

Orange prismatic crystals of the supramolecular coordination polymer (SCP) _∞³[Cu(CN)₂(Me₃Sn)(Pyz)], SCP 1 , were synthesized using a self‐assembly method under ambient conditions. Nanosized 1 was obtained using the same molar ratio in water by ultrasonic irradiation. SCP 1 was characterized using single‐crystal X‐ray diffraction, elemental analysis, thermal analysis and Fourier transform infrared spectroscopy. SCP 1 and its nanosized 1 particles were also examined using powder X‐ay diffraction and scanning electron microscopy. The luminescence emission of SCP 1 was studied as well as its use as a sensor for the detection of common organic solvents and metal ions. Also, the catalytic activities of nanosized 1 towards various organic dyes were investigated under ambient conditions, UV irradiation and ultrasonic irradiation. Nanosized 1 as a heterogeneous nanoparticle catalyst exhibits high catalytic activity for the degradation of eosin‐Y and acid blue dyes. The mechanism of degradation investigated using various scavenger techniques is proposed and discussed. The catalytic oxidation process is mainly caused by ?OH radicals.     

Towards surface-supported supramolecular architectures: tailored coordination assembly of 1,4-benzenedicarboxylate and Fe on Cu(100)

We present a comprehensive investigation of the modular assembly of surface-supported metal-organic coordination systems with specific topologies and high structural stability formed by vapor deposition of 1,4-benzenedicarboxylic acid molecules and iron atoms on a Cu(100) surface under ultra-high vacuum conditions. By making use of the two carboxylate moieties available for lateral linkage to Fe atoms, we succeeded in the fabrication of distinct Fe-carboxylate coordination architectures at the surface by carefully adjusting the ligand and metal concentration ratio and the temperature of the post-deposition annealing treatment. The mononuclear, 1D-polymeric and fully 2D-reticulated metallosupramolecular arrangements obtained were characterized in situ at the single-molecule level by scanning tunneling microscopy.     

Self-assembled four-membered networks of trimesic acid forming organic channel structures

By the co-crystallization of trimesic acid, TMA, with molecules such as dimethylamine, N,N,N′,N′-tetramethylethylenediamine and methanol, it has been possible to generate hydrogen-bonded four-membered networks of TMA. The three-dimensional arrangement of the four-membered networks gives rise to channels occupied by the guest molecules. It has also been possible to generate a four-membered network by co-ordination of TMA with Co(II).     

Syntheses and crystal structures of straight or zigzag one-dimensional coordination polymers based on Cu(II) square pyramidal or Cu(I) tetrahedral coordination environments

Two coordination polymers containing copper ions, [Cu(SO₄)(pyz)(H₂O)]_n (1) and [Cu₂(SO₄)(pyz)₂(H₂O)₂]_n (2) (pyz = pyrazine), have been synthesized and characterized by single-crystal X-ray analyses. Compound 1 was synthesized by the reaction of Cu(SO₄) · 5H₂O with pyz (ratio = 1:2) in H₂O at room temperature. The structure of 1 consists of linear chains of [Cu(pyz)(H₂O)]²⁺, with coordinated sulfate ions bridging the chains. Compound 2 was obtained as dark red blocks from the reaction of Cu(SO₄) · 5H₂O and pyz (ratio = 1:2) in H₂O, after heating to 180 °C in a Teflon autoclave for 48 h. The structure of 2 consists of zigzag chains of [Cu(pyz)(H₂O)]⁺ with sulfate ions. Only the difference in the synthesis temperature, room temperature or 180 °C, determines whether Cu(II) or Cu(I) coordination polymers are formed, with the reduction of Cu(II) to Cu(I) being explained by the Gillard mechanism.     

Metal-organic coordination interactions in Fe-terephthalic acid networks on Cu(100)

Metal-organic coordination interactions are prime candidates for the formation of self-assembled, nanometer-scale periodic networks with room-temperature structural stability. We present X-ray photoelectron spectroscopy measurements of such networks at the Cu(100) surface which provide clear evidence for genuine metal-organic coordination. This is evident as binding energy shifts in the O 1s and Fe 3p photoelectron peaks, corresponding to O and Fe atoms involved in the coordination. Our results provide the first clear evidence for charge-transfer coordination in metal-organic networks at surfaces and demonstrate a well-defined oxidation state for the coordinated Fe ions.     

Structure and bonding of alkanethiols on Cu(111) and Cu(100)

The local structure of the sulfur atom of methanethiolate and ethanethiolate on the Cu(111) and Cu(100) surfaces was investigated from first principles employing the periodic supercell approach in the framework of density functional theory. On the 111 surface, we investigated the (square root 3 x square root 3)R30 degrees and (2 x 2) structures, whereas on the 100 surface, we investigated the p(2 x 2) and c(2 x 2) structures. The landscape of the potential energy surface on each metal surface presents distinctive features that explain the local adsorption structure of thiolates found experimentally. On the Cu(111) surface, the energy difference between the hollow and bridge sites is only 3 kcal/mol, and consequently, adsorption sites ranging from the hollow to the bridge site were observed for increasing surface coverages. On the Cu(100) surface, there is a large energy difference of 12 kcal/mol between the hollow and bridge sites, and therefore, only the 4-fold coordination was observed. The high stabilization of thiolates on the hollow site of Cu(100) may be the driving force for the pseudosquare reconstruction observed experimentally on Cu(111). Density of states analysis and density difference plots were employed to characterize the bonding on different surface sites. Upon interaction with the metal d bands, the pi* orbital of methanethiolate splits into several peaks. The two most prominent peaks are located on either edge of the metal d band. They correspond to bonding and antibonding S-Cu interactions. In the case of ethanethiolate, all the back-bonds are affected by the surface bonding, leading to alternating regions of depletion and accumulation of charge in the successive bonds.     

Hydrogen bonding of excited states in supramolecular host-guest inclusion complexes

Host-guest inclusion complexes represent an important type of supramolecular structure, one which finds widespread applications in diverse areas including separations science, the food industry, molecular sensors and optical devices. There are several driving forces for the formation of such inclusion complexes in solution; one of the most important is hydrogen bonding between the guest and host molecules. The nature or strength of the hydrogen bonding may change upon electronic excitation of the guest, for example during fluorescence studies or when the inclusion complex is used as an optical sensor. In this Perspective article, the impact of hydrogen bonding between excited state guests and their hosts is examined in detail, in terms of the impact on the formation and stability of such excited state complexes, the effects on guest fluorescence, changes in the stability of ground state guest complexes upon electronic excitation, the application of inclusion complexes as fluorescent sensors and materials, and the use of fluorescence spectroscopy for their study.     

Syntheses,supramolecular structures and properties of six coordination complexes based on 5-sulfosalicylic acid and bipyridyl-like chelates

Six new complexes constructed by 5-sulfosalicylic acid and bipyridyl-like ligands (2,2′-bipy and 1,10-phen), namely [Cu₄(OH)₂(ssal)₂(phen)₄ · 7H₂O] (1), [Cu₄(OH)₂(ssal)₂(bipy)₄ · 2H₂O] (2), [Cd(Hssal)(bipy)] (3), [Cd(HL)₂(phen)₂] (4), [Cr(ssal)(bipy)(H₂O)₂ · 2H₂O] (5) and [Cr(ssal)(phen)₂] (6) (H₃ssal = 5-sulfosalicylic acid, H₂L = p-hydroxybenzenesulfonic acid, bipy = 2,2′-bipy, phen = 1,10-phen) were prepared under hydrothermal conditions and their structures were determined by single-crystal X-ray diffraction. Complexes 1 and 2 are both tetranuclear copper complexes with a stepped topology. In complex 3, a new coordination mode of the Hssal²⁻ group is reported in this work. During the synthetic process of complex 4, in situ decarboxylation of 5-sulfosalicylic acid into p-hydroxybenzenesulfonic acid is involved. Two chromium 5-sulfosalicylates (5 and 6) are reported for the first time. These new complexes display different supramolecular structures by O–H?O, C–H?O hydrogen bonds as well as π?π, C–H?π and O?π interactions. The results of magnetic determination show that ferromagnetic interactions exist in complex 1, however, antiferromagnetic interactions exist in 2.     

The molecular orientation of para-sexiphenyl on Cu(110) and Cu(110) p(2x1)O.

Controlling the molecular growth of organic semiconductors is an important issue to optimize the performance of organic devices. Conjugated molecules, used as building blocks, have an anisotropic shape and also anisotropic physical properties like charge transport or luminescence. The main challenge is to grow highly crystalline layers with molecules of defined orientation. The higher the crystallinity, the closer these properties reach their full intrinsic potential, while the orientation determines the physical properties of the film. Herein we show that the molecular orientation and growth can be steered by the surface chemistry, which tunes the molecule-substrate interaction. In addition, the oxygen reconstruction of the surface, demonstrates the flexibility of the organic molecules to adopt a given surface corrugation and their unique possibility to release stress by tilting.     

Adsorption and coordination of tartaric acid enantiomers on Cu(111) in aqueous solution

Chiral modifiers have gained much attention because they can induce high enantioselectivity on reactive metal surface in heterogeneous enantioselective catalysis. The high enantioselectivity is attributed to that the chirality of modifiers is bestowed onto the metal surface upon adsorption. Much study on the adsorption of modifiers on metal surface has been performed in an ultrahigh vacuum. In this paper, the adsorption of tartaric acid on Cu(111) has been studied by electrochemical scanning tunneling microscopy (STM) in aqueous solution. It is found that (R,R)-tartaric acid and (S,S)-tartaric acid can form a well-ordered adlayer on the Cu(111) surface with a (4 x 4) symmetry. A dimeric structure is proposed in the temporary model from STM observation.     

Synthesis,structures and properties of two novel copper(II) complexes with hydrogen bonding supramolecular networks

Two novel complexes, [Cu(HL)₂(H₂O)]₂(OH)₂(ClO₄)₂·1.5H₂O (1) and [Cu(HL)₂]Cl₂·4H₂O (2), have been prepared by reacting copper salts with the 4-amino-3-ethyl-1,2,4-triazole-5-thione (HL) ligand in neutral solution and in HCl (6 mol L^–1) medium, respectively. They were characterized by FT-IR and u.v.–vis. spectra, and the structures were determined by single crystal X-ray diffraction techniques. In both complexes, the triazole ligand chelated the metal ions through the amine and thione substituents on the five-membered ring. Complex (1) has a square-pyramidal copper(II) ion coordinated by two triazole ligands and one water molecule. Unlike (1), the Cu²⁺ ion in (2) displays its characteristic Jahn–Teller distortion with the distance of the Cl^– anions to metal ion further away than that of the triazole ligands. The most intriguing structural features of the title complexes are that the HL ligands chelate copper(II) ions through the N(1) and S(1) atoms, in a cis mode in (1) and a trans mode in (2). In both cases, self-assembled crystals, by supramolecular contacts simultaneously, form two multi-dimensional frameworks.     

Atomic structure and bonding of water overlayer on Cu(110): the borderline for intact and dissociative adsorption

By carefully comparing the calculated and measured work function data, energetics, and vibrational spectroscopy, we determine explicitly the water structure in c(2 x 2) periodicity on Cu(110) to be an intact water overlayer with a majority component of H-down bilayer (95%) in low temperature experiments. Water dissociation is accessible by heating or ultraviolet illumination, resulting in a sensitive change in electron density at the surface and could therefore be monitored by work function measurement.     

The structures of Cu(I) and Ag(I) coordination polymers using the tricyanofluoroborate anion

The anion BF(CN)3-forms isomorphous network polymers with Cu(I) and Ag(I) that exhibit one-dimensional channels along the b axis and demonstrate stability to air and light respectively.     

Hydrogen bonding and multiphonon structure in copper pyrazine coordination polymers

We report a systematic investigation of the temperature-dependent infrared vibrational spectra of a family of chemically related coordination polymer magnets based upon bridging bifluoride (HF(2)-) and terminal fluoride (F-) ligands in copper pyrazine complexes including Cu(HF(2))(pyz)(2)BF(4), Cu(HF(2))(pyz)(2)ClO(4), and CuF(2)(H(2)O)(2)(pyz). We compare our results with several one- and two-dimensional prototype materials including Cu(pyz)(NO(3))(2) and Cu(pyz)(2)(ClO(4))(2). Unusual low-temperature hydrogen bonding, local structural transitions associated with stronger low-temperature hydrogen bonding, and striking multiphonon effects that derive from coupling of an infrared-active fundamental with strong Raman-active modes of the pyrazine building-block molecule are observed. On the basis of the spectroscopic evidence, these interactions are ubiquitous to this family of coordination polymers and may work to stabilize long-range magnetic ordering at low temperature. Similar interactions are likely to be present in other molecule-based magnets.