In-situ scanning tunneling microscopy of carbon monoxide adsorbed on Au(111) electrode

In-situ scanning tunneling microscopy (STM) coupled with cyclic voltammetry was used to examine the adsorption of carbon monoxide (CO) molecules on an ordered Au(111) electrode in 0.1 M HClO4. Molecular resolution STM revealed the formation of several commensurate CO adlattices, but the (9 x radical 3) structure eventually prevailed with time. The CO adlayer was completely electrooxidized to CO2 at 0.9 V versus RHE in CO-free 0.1 M HClO(4), as indicated by a broad and irreversible anodic peak which appeared at this potential in a positive potential sweep from 0.05 to 1.6 V. A maximal coverage of 0.3 was estimated for CO admolecules from the amount of charge involved in this feature. Real-time in-situ STM imaging allowed direct visualization of the adsorption process of CO on Au(111) at 0.1 V, showing the lifting of (radical 3 x 22) reconstruction of Au(111) and the formation of ordered CO adlattices. The (9 x radical 3) structure observed in CO-saturated perchloric acid has a coverage of 0.28, which is approximately equal to that determined from coulometry. Switching the potential from 0.1 to -0.1 V restored the reconstructed Au(111) with no change in the (9 x radical 3)-CO adlattice. However, the reconstructed Au(111) featured a pairwise corrugation pattern with two nearest pairs separated by 74 +/- 1 A, corresponding to a 14% increase from the ideal value of 65.6 A known for the ( radical 3 x 22) reconstruction. Molecular resolution STM further revealed that protrusions resulting from CO admolecules in the (9 x radical 3) structure exhibited distinctly different corrugation heights, suggesting that the CO molecules resided at different sites on Au(111). This ordered structure predominated in the potential range between 0.1 and 0.7 V; however, it was converted into new structures of (7 x radical 7) and ( radical 43 x 2 radical 13) on the unreconstructed Au(111) when the potential was held at 0.8 V for ca. 60 min. The coverage of CO adlayer decreased accordingly from 0.28 to 0.13 before it was completely removed from the Au(111) surface at more positive potentials.     

Cadmium underpotential deposition on Cu(111) in situ scanning tunneling microscopy

Atomically resolved in situ STM images are presented for an underpotentially deposited (upd) cadmium layer on a Cu(111) electrode from a 10(-4) M CdCl2/10(-2) M HCl solution. The observed moiré-like structure seen in the images is analysed by means of an algebraic model for this long-range superstructure. A structure model for the upd layer is developed which reflects all features of the observed moiré pattern. Furthermore the height modulation was simulated by a hard-sphere model for the Cd overlayer and shows remarkable agreement with the detailed tunneling current density distribution of the measured STM images. The existence of translational and rotational domains is demonstrated. The results are also compared and shown to be fully consistent with previous (ex situ) low-energy electron diffraction (LEED) observations of this system. The mechanism of Cd upd involves a dynamic site exchange between preadsorbed Cl- anions and adsorbing Cd2+ cations as previously concluded from ex situ X-ray photoelectron (XPS) and low-energy ion scattering (LEIS) measurements.     

Elucidation of the deposition processes and spatial structures of alkanethiol and arylthiol molecules adsorbed on Pt111 electrodes with in situ scanning tunneling microscopy

In situ scanning tunneling microscopy (STM) was used to examine the spatial structures of n-alkane thiols (1-hexanethiol, 1-nonanethiol, and 1-octahexanethiol) and arylthiols (benzenethiol and 4-hydroxybenzenethiol) adsorbed on well-ordered Pt111 electrodes in 0.1 M HClO4. The electrochemical potential and molecular flux were found to be the dominant factors in determining the growth mechanisms, final coverages, and spatial structures of these organic adlayers. Depending on the concentrations of the thiols, deposition of self-assembled monolayers (SAMs) followed either the nucleation-and-growth mechanism or the random fill-in mechanism. Low and high thiol concentrations respectively produced two ordered structures, (2 x 2) and (square root of 3 x square root of 3)R30 degrees , between 0.05 and 0.3 V. On average, an ordered domain spanned 500 A when the SAMs were made at 0.15 V, but this dimension shrank substantially once the potential was raised above 0.3 V. This potential-induced order-to-disorder phase transition resulted from a continuous deposition of thiols, preferentially at domain boundaries of (square root of 3 x square root of 3 x )R30 degrees arrays. All molecular adlayers were completely disordered by 0.6 V, and this restructuring event was irreversible with potential modulation. Since all thiols were arranged in a manner similar to that adopted by sulfur adatoms (Sung et al. J. Am. Chem. Soc. 1997, 119, 194), it is likely that they were adsorbed mainly through their sulfur headgroups in a tilted configuration, irrespective of the coverage. Both the sulfur and phenyl groups of benzenethiol admolecules gave rise to features with different corrugation heights in the molecular-resolution STM images. All thiols were adsorbed strongly enough that they remained intact at a potential as negative as -1.0 V in 0.1 M KOH.     

Adsorption and in situ scanning tunneling microscopy of cysteine on Au(111): Structure, energy, and tunneling contrasts

The amino acid L-cysteine (Cys) adsorbs in highly ordered (3 square root of 3 x 6) R30 degrees lattices on Au(111) electrodes from 50 mM ammonium acetate, pH 4.6. We provide new high-resolution in situ scanning tunneling microscopy (STM) data for the L-Cys adlayer. The data substantiate previous data with higher resolution, now at the submolecular level, where each L-Cys molecule shows a bilobed feature. The high image resolution has warranted a quantum chemical computational effort. The present work offers a density functional study of the geometry optimized adsorption of four L-Cys forms-the molecule, the anion, the neutral radical, and its zwitterion adsorbed a-top-at the bridge and at the threefold hollow site of a planar Au(111) Au12 cluster. This model is crude but enables the inclusion of other effects, particularly the tungsten tip represented as a single or small cluster of W-atoms, and the solvation of the L-Cys surface cluster. The computational data are recast as constant current-height profiles as the most common in situ STM mode. The computations show that the approximately neutral radical, with the carboxyl group pointing toward and the amino group pointing away from the surface, gives the most stable adsorption, with little difference between the a-top and threefold sites. Attractive dipolar interactions screened by a dielectric medium stabilize around a cluster size of six L-Cys entities, as observed experimentally. The computed STM images are different for the different L-Cys forms. Both lateral and vertical dimensions of the radical accord with the observed dimensions, while those of the molecule and anion are significantly more extended. A-top L-Cys radical adsorption further gives a bilobed height profile resembling the observed images, with comparable contributions from sulfur and the amino group. L-Cys radical a-top adsorption therefore emerges as the best representation of L-Cys adsorption on Au(111).     

Adlayers of Sb irreversibly adsorbed on Pt(111): an electrochemical scanning tunneling microscopy study

This work presents an electrochemical scanning tunneling microscopy study of Sb irreversibly adsorbed on Pt(111) at various potentials. At an open circuit potential (0.46 V vs a Ag/AgCl electrode), well-ordered structures of SbO+ were found: four (4 x 3)-3SbO+ structures and one (2 square root(3) x 2 square root(3))R30 degrees-3SbO+ structure. In addition, several unidentifiable transient structures of SbO+ were observed, and their relations to the well-ordered structures of (4 x 3) and (2 square root(3) x 2 square root(3))R30 degrees, regarding structural evolution, were proposed. At a reducing potential (0 V), the Pt(111) surface was covered with irreversibly adsorbed Sb which consisted of three different domains: protruded domain, domain of uniaxially incommensurate (square root(3) x square root(2))-Sb, and domain of bare (1 x 1) Pt(111). During oxidation of elemental Sb at 0.30 V, the Sb domains of the (square root(3) x square root(2)) structure were oxidized, while the protruded domains were not oxidized. After underpotential deposition of additional Sb onto the Pt(111) covered with irreversibly adsorbed Sb, the whole surface was filled with the Sb domains where each Sb atoms were separated by the square root(2a) distance (a = one Pt-Pt distance, 0.277 nm). The observed electrochemical inactivity below 0.3 V was discussed in terms of the protruded domain of a presumable incommensurate (square root(2) x square root(2)) structure.     

Adsorption of formaldehyde on Pt(111) and Pt(100) electrodes: cyclic voltammetry and scanning tunneling microscopy

The adsorption of formaldehyde (HCHO) on Pt(111) and Pt(100) electrodes was examined by cyclic voltammetry (CV) and in situ scanning tunneling microscopy (STM) in 0.1 M HClO(4). The extent of HCHO adsorption at both Pt electrodes was evaluated by comparing the CVs, particularly for the hydrogen adsorption and desorption between 0.05 and 0.4 V, obtained in 0.1 M HClO(4) with and without HCHO. The adsorption of HCHO on these Pt electrodes was significant only when [HCHO] >/= 10 mM. Adsorbed organic intermediate species acted as poisons, blocking Pt surfaces and causing delays in the oxidation of HCHO. Compared to Pt(111), Pt(100) was more prone to poisoning, as indicated by a 200 mV positive shift of the onset of HCHO oxidation. However, Pt(100) exhibited an activity 3 times higher than that of Pt(111), as indicated by the difference in peak current density of HCHO oxidation. Molecular resolution STM revealed highly ordered structures of Pt(111)-( radical7 x radical7)R19.1 degrees and Pt(100)-( radical2 x radical2) in the potential region between 0.1 and 0.3 V. Voltammetric measurements further showed that the organic poisons produced by HCHO adsorption behaved differently from the intentionally dosed CO admolecules, which supports the assumption for the formation of HCO or COH adspecies, rather than CO, as the poison. On both Pt electrodes, HCHO oxidation commenced preferentially at step sites at the onset potential of this reaction, but it occurred uniformly at the peak potentials.     

Growth of nanocrystalline MoO3 on Au(111) studied by in situ scanning tunneling microscopy

The growth of nanocrystalline MoO3 islands on Au(111) using physical vapor deposition of Mo has been studied by scanning tunneling microscopy and low energy electron diffraction. The growth conditions affect the shape and distribution of the MoO3 nanostructures, providing a means of preparing materials with different percentages of edge sites that may have different chemical and physical properties than atoms in the interior of the nanostructures. MoO3 islands were prepared by physical vapor deposition of Mo and subsequent oxidation by NO2 exposure at temperatures between 450 K and 600 K. They exhibit a crystalline structure with a c(4 x 2) periodicity relative to unreconstructed Au(111). While the atomic-scale structure is identical to that of MoO3 islands prepared by chemical vapor deposition, we demonstrate that the distribution of MoO3 islands on the Au(111) surface reflects the distribution of Mo clusters prior to oxidation although the growth of MoO3 involves long-range mass transport via volatile MoO3 precursor species. The island morphology is kinetically controlled at 450 K, whereas an equilibrium shape is approached at higher preparation temperatures or after prolonged annealing at the elevated temperature. Mo deposition at or above 525 K leads to the formation of a Mo-Au surface alloy as indicated by the observation of embedded MoO3 islands after oxidation by NO2. Au vacancy islands, formed when Mo and Au dealloy to produce vacancies, are observed for these growth conditions.     

Observation from scanning tunneling microscopy of a striped phase for octanethiol adsorbed on Au(111) from solution

A self-assembled monolayer of 1-octanethiol was prepared on a Au(111) surface via liquid-phase adsorption. An investigation of the surface using ultrahigh-vacuum scanning tunneling microscopy revealed a striped phase of the octanethiol molecules under the conditions examined. This phase resembles the well-known "pinstripe" structure of alkanethiols on Au(111), with a registry that is similar to that of the previously observed p x radical3 structures. We discuss the nature of this structure with respect to those that have been observed for other n-alkanethiols.     

Scanning tunneling microscopy (STM) and scanning electron microscopy (SEM) of electrodispersed gold electrodes

Images of large active surface (electrodispersed) gold electrodes obtained by electroreduction of an oxide layer grown by applying a fast periodic square wave potential to polycrystalline specimens, have been obtained by STM and SEM. For the first time a correlation of imaging data of both microscopes can be established which allows one to find different structural details of these electrodes. The roughening increase produced by the electrochemical activation is explained tentatively through a generalized structural model consisting of an overlayer of sticking spheres of about 10 nm average diameter leaving inner interconnected channels of nearly the same average diameter and penetrating in the overlayer structure. The size of the spherical units is comparable to that of metal clusters involving the optimal ratio of surface to bulk atoms associated with the greatest catalytic activity.     

Self-assembly of l-tryptophan on Cu(111) studied by low-temperature scanning tunneling microscopy

The self-assembly of l-tryptophan on Cu(111) is investigated by an ultrahigh vacuum scanning tunneling microscope (STM) at 4.4 K. When deposited onto the substrate at around 120 K with a coverage of 0.1 monolayer, molecular trimers, tetramers, hexamers, and chains coexist on Cu(111). Then almost all molecules self-assemble into chiral hexamers after being annealed at room temperature. When increasing molecular coverage to the full layer, a new type of chain is observed on the surface. Based on the high-resolution STM images at sub-molecular level, we suggest that the l-tryptophan molecules are present in neutral, zwitterionic or anionic states in these structures.     

Self-assembly of L-tryptophan on Cu(111) studied by low-temperature scanning tunneling microscopy

The self-assembly of L-tryptophan on Cu(111) is investigated by an ultrahigh vacuum scanning tunneling microscope (STM) at 4.4 K. A series of novel supramolecular structures have been prepared with different annealing temperatures.     

In situ scanning tunneling microscopy investigation of sulfur oxidative underpotential deposition on Ag(100) and Ag(110)

Underpotential (UPD) deposition of sulfur from Na(2)S solution in 0.1 M NaOH was studied on Ag(100) and Ag(110) using in situ scanning tunneling microscopy (STM). The cyclic voltammogram on Ag(100) presents two broad peaks, whereas three partial overlapping peaks and a sharper one are observed on Ag(110). STM measurements carried out during the whole UPD process show that progressively more compact structures are formed as the applied potential is scanned toward more positive potentials. More precisely, p(2×2), c(2×6), and c(2×2) were found on Ag(100) at E = -1.25, -1.0, and -0.9 V, respectively. Less definite conclusions can be drawn for the structures of S overlayers on Ag(110). However, the experimental findings are consistent with an incomplete p(2×1) at potentials preceding the sharp peak, and with a c(2×2) structure at E = -0.9 V vs Ag/AgCl, KCl(sat). The coverage values calculated on the basis of the hypothesized structures have been compared with the values obtained from chronocoulometric measurements at the most positive potentials investigated. Thus, the experimental coverage θ = 0.5 coincides with the coverage calculated for the c(2×2) structure found on Ag(110) at E = -0.9 V by STM, whereas the experimental coverage θ = 0.42 suggests that a mixture of structures c(2×6) and c(2×2) is formed on Ag(100).     

Self-assembled gold nanoparticles on functionalized gold (111) studied by scanning tunneling microscopy

Nanogold colloidal solutions are prepared by the reduction of HAuClO4 with sodium citrate and sodium borohydride.4-Aminothiophenol (ATP) self-assembled monolayers (SAMs) are formed on gold(111) surface,on which gold nanopartides are immobilized and a sub-monolayer of the particles appears.This sub-monolayer of gold nanopartides is characterized with scanning tunneling microscopy (STM),and a dual energy barrier tunneling model is proposed to explain the imageability of the gold nanopartides by STM.This model can also be used to construct multiple energy barrier structure on solid/ liquid interface and to evaluate the electron transport ability of some organic monolayers with the aid of electrochemical method.     

4-Mercaptopyridine on Au(111): a scanning tunneling microscopy and spectroscopy study

The adsorption of 4-mercaptopyridine (4MPy) molecules on reconstructed Au(111) is investigated by Scanning Tunneling Microscopy (STM) and Spectroscopy (STS) at low temperature and under ultra-high vacuum (UHV) conditions. As made visible by STM, at low coverage (<10%) 4MPy adsorbs preferentially at elbow sites of the Herringbone reconstruction and at step edges of the Au(111). Increasing coverage (but still <30%) results in formation of molecular chains followed, at even higher coverage, by a 3-dimensional growth. Detailed analysis of z-V spectroscopy (ramping the tunneling bias V while keeping the tunneling current constant) provides information on the bias dependent apparent height of a single 4MPy/Au(111) as well as on the local density of states (LDOS) of single and chain 4MPy molecules in comparison to the bare Au(111) surface revealing a significant shift of the lowest unoccupied molecular orbital (LUMO) towards lower energy for molecules within chains. Additionally, the data provide no evidence that for these samples prepared in UHV the adsorption of 4MPy on Au(111) requires mediating Au adatoms. Also, clear indications are given that the adsorption does not induce a strong reduction of the Au DOS close to its Fermi energy. Finally, in context of the apparent STM height of 4MPy molecules, the behavior of the differential barrier height Φ(diff)(V) = (?(z)?(V)I/?(V)I)(2) on bare Au(111) and 4MPy/Au(111) is analyzed and the corresponding experimental values are applied to recover the LDOS of the molecule for unoccupied states according to a previously published numerical recipe [B. Koslowski, H. Pfeifer and P. Ziemann, Phys. Rev. B, 2009, 80, 165419 and M. Ziegler, N. Néel, A. Sperl, J. Kr?ger, and R. Berndt, Phys. Rev. B, 2009, 80, 125402]. In this way, one obtains a spectrum comprising a constant DOS of the Shockley-like surface state of Au(111) and a Lorentzian line attributed to the LUMO of 4MPy.     

Infrared and Raman spectroscopic study of 1,2-benzenedithiol adsorbed on silver

Adsorption of 1,2-benzenedithiol (1,2-BDT) on a silver surface has been investigated by surface-enhanced Raman (SER) and reflection-absorption infrared (RAI) spectroscopy. The molecule was adsorbed on silver very favorably by forming two Ag---S bonds after deprotonation. From the RAI spectral pattern, the benzene ring of adsorbed 1,2-BDT was presumed to be tilted by ca. 38° from the surface normal. This RAI information was used to test the validity of various proposed SER selection rules. Being frequently quoted in the literature, the presence or absence of the benzene ring CH stretching vibration in the SER spectrum seemed, in fact, to be a very useful indicator in judging the perpendicular or parallel orientation of the benzene ring with respect to the surface. However, the so-called in-plane/out-of-plane dichotomy as well as the more elaborate symmetry-based electromagnetic selection rule was found not to work in the present system.     

Stereochemistry of 1,2-dichloroethane adsorbed on Pt(111)

The rotational isomerism of 1,2-dichloroethane (DCE, CH2ClCH2Cl) adsorbed on Pt(111) was studied in the temperature range of 35-100 K using high-resolution electron energy loss spectroscopy and metastable atom electron spectroscopy. In the coverage below monolayer the physisorbed and chemisorbed species coexist at 35 K in the gauche and slightly distorted trans form, respectively. Owing to the direct Pt-Cl interactions, the nonbonding Cl 3p states of the chemisorbed DCE are split off, giving rise to degradation in symmetry from the pure trans form (C2h). The physisorbed gauche conformers are arranged with the C2 axis parallel (or heavily tilted) to the substrate and converted irreversibly to the pseudo-trans form by heating at 70 K. In the multilayer, the trans and gauche conformers exist at 35 K, where the former population is increased with increasing layer thickness. Upon annealing the bilayer at 80 K, the irreversible conversion takes place to yield a higher population of the gauche conformer in the topmost layer. The conformational stabilities and mutual changes of DCE adsorbed on a metal surface are discussed in terms of intramolecular rotational potential.     

Self-assembly of manganese phthalocyanine on Pb(111) surface: a scanning tunneling microscopy study

The self-assembled structure of submonolayer manganese phthalocyanine (MnPc) on Pb(111) surface is investigated by using low-temperature scanning tunneling microscopy (STM). A "holelike" superlattice, which is superimposed on the self-assembled nearly quadratic network, is observed. High resolution STM images reveal that there are two distinct azimuthal orientations of MnPc molecules. It is found that by taking the two different orientations the self-assembly can further be optimized energetically by maximizing intermolecular orbital overlapping. It is this intralayer energy minimization process that leads to the characteristic holelike superlattice.     

Luminescence from 3,4,9,10-perylenetetracarboxylic dianhydride on Ag(111) surface excited by tunneling electrons in scanning tunneling microscopy

The electronic excitations induced with tunneling electrons into adlayers of 3,4,9,10-perylenetetracarboxylic dianhydride (PTCDA) on Ag(111) have been investigated by in situ fluorescence spectroscopy in scanning tunneling microscopy (STM). A minute area of the surface is excited by an electron tunneling process in STM. Fluorescence spectra strongly depend on the coverage of PTCDA on Ag(111). The adsorption of the first PTCDA layer quenches the intrinsic surface plasmon originated from the clean Ag(111). When the second layer is formed, fluorescence spectra are dominated by the signals from PTCDA, which are interpreted as the radiative decay from the manifold of first singlet excited state (S(1)) of adsorbed PTCDA. The fluorescence of PTCDA is independent of the bias polarity. In addition, the fluorescence excitation spectrum agrees with that by optical excitation. Both results indicate that S(1) is directly excited by the inelastic impact scattering of electrons tunneling within the PTCDA adlayer.     

In situ scanning tunneling microscopy of DNA-modified gold surfaces: bias and mismatch dependence

In situ scanning tunneling microscopy has been performed on DNA-modified gold surfaces under physiological conditions. The STM images of DNA-modified gold surfaces are strongly dependent on the applied potential and percentage of DNA duplexes containing a single base mismatch. At negative surface potentials we observe reproducible features that are attributed to DNA agglomerates where the DNA duplexes are in the upright orientation; at positive potentials, when DNA molecules lie down on the surface, the film is transparent, and only the gold surface is distinguishable. These observations indicate that DNA possesses a non-negligible local density of states which can be probed when the DNA duplex is in the upright orientation. By varying the percentage of DNA duplexes containing a single base mismatch, we have observed a dramatic change in the image contrast as a result of the perturbation induced by the mismatch on the electronic pathway inside the DNA. These results emphasize the central role of the integrity of the pi-stack for DNA charge transport. Duplex DNA is a promising candidate in molecular electronics, but only in arrangements where the orbitals can efficiently overlap with the electronic states of the electrodes and the environment does not constrain the DNA in non-native, poorly stacked conformations.     

Ordered molecular assemblies of substituted bis(phthalocyaninato) rare earth complexes on Au(111): in situ scanning tunneling microscopy and electrochemical studies

Substituted bis(phthalocyaninato) rare earth complexes ML2 (M = Y and Ce; L = [Pc(OC8H17)8]2, where Pc = phthalocyaninato) were adsorbed onto single crystalline Au(111) electrodes from benzene saturated with either YL2 or CeL2 complex at room temperature. In situ scanning tunneling microscopy (STM) and cyclic voltammetry (CV) were used to examine the structures and the redox reactions of these admolecules on Au(111) electrodes in 0.1 mol dm(-3) HClO4. The CVs obtained with YL2- and CeL2-coated Au(111) electrodes respectively contained two and three pairs of redox peaks between 0 and 1.0 V (versus reversible hydrogen electrode). STM molecular resolution revealed that YL2 and CeL2 admolecules were imaged as spherical protrusions separated by 2.3 nm, which suggests that they were oriented with their molecular planes parallel to the unreconstructed Au(111)-(1 x 1). Both molecules when adsorbing from approximately micromolar benzene dosing solutions produced mainly ordered arrays characterized as (8 x 5 radical3)rect (theta = 0.0125). The redox reactions occurring between 0.2 and 1.0 V caused no change in the adlayer, but they were desorbed or oxidized at the negative and positive potential limits. The processes of adsorption and desorption at the negative potentials were reversible to the modulation of potential. Electrochemical impedance spectroscopy (EIS) and CV measurements showed that YL2 and CeL2 adlayers could block the adsorption of perchlorate anions and mediating electron transfer at the Au(111) electrode, leading to the enhancement of charge transfer for the ferro/ferricyanide redox couple.