Infrared spectroscopy of [XFeC24H12]+ (X = C5H5, C5(CH3)5) complexes in the gas phase: experimental and computational studies of astrophysical interest

We report the first experimental mid-infrared (700-1600 cm (-1)) multiple-photon dissociation (IRMPD) spectra of [XFeC 24H 12] (+) (X = C 5H 5 or Cp, C 5(CH 3) 5 or Cp*) complexes in the gas phase obtained using the free electron laser for infrared experiments. The experimental results are complemented with theoretical infrared (IR) absorption spectra calculated with methods based on density functional theory. The isomers in which the XFe unit is coordinated to an outer ring of C 24H 12 (+) (Out isomers) were calculated to be the most stable ones. From the comparison between the experimental and calculated spectra, we could derive that, (i) for [CpFeC 24H 12] (+) complexes, the (1)A Out isomer appears to be the best candidate to be formed in the experiment but the presence of the (1)A In higher energy isomer in minor abundance is also plausible; and (ii) for [Cp*FeC 24H 12] (+) complexes, the three calculated Out isomers of similar energy are likely to be present simultaneously, in qualitative agreement with the observed dissociation patterns. This study also emphasizes the threshold effect in the IRMPD spectrum below which IR bands cannot be observed and evidence strong mode coupling effects in the [XFeC 24H 12] (+) species. The effect of the coordination of Fe in weakening the bands of C 24H 12 (+) in the 1000-1600 cm (-1) region is confirmed, which is of interest to search for such complexes in interstellar environments.     

Fingerprint vibrational spectra of protonated methyl esters of amino acids in the gas phase

Infrared spectra of the protonated monomers of glycine, alanine, valine, and leucine methyl esters are presented. These protonated species are generated in the gas phase via matrix assisted laser desorption ionization (MALDI) within the cell of a Fourier transform ion cyclotron resonance spectrometer (FTICR) where they are subsequently mass selected as the only species trapped in the FTICR cell. Alternatively, they have also been generated by electrospray ionization and transferred to a Paul ion-trap mass spectrometer where they are similarly isolated. In both cases IR spectra are then derived from the frequency dependence of the infrared multiple photon dissociation (IRMPD) in the mid-infrared region (1000-2200 cm(-1)), using the free electron laser facility Centre de Laser Infrarouge d'Orsay (CLIO). IR bands are assigned by comparison with the calculated vibrational spectra of the lowest energy isomers using density functional theory (DFT) calculations. There is in general good agreement between experimental IRMPD spectra and calculated IR absorption spectra for the lowest energy conformer which provides evidence for conformational preferences. The two different approaches to ion generation and trapping yield IRMPD spectra that are in excellent agreement.     

Pi-complex structure of gaseous benzene-NO cations assayed by IR multiple photon dissociation spectroscopy

[C(6)H(6)NO](+) ions, in two isomeric forms involved as key intermediates in the aromatic nitrosation reaction, have been produced in the gas phase and analyzed by IR multiple photon dissociation (IRMPD) spectroscopy in the 800-2200 cm(-)(1) fingerprint wavenumber range, exploiting the high fluence and wide tunability of a free electron laser (FEL) source. The IRMPD spectra were compared with the IR absorption spectra calculated for the optimized structures of potential isomers, thus allowing structural information on the absorbing species. [C(6)H(6)NO](+) ions were obtained by two routes, taking advantage of the FEL coupling to two different ion traps. In the first one, an FT-ICR mass spectrometer, a sequence of ion-molecule reactions was allowed to occur, ultimately leading to an NO(+) transfer process to benzene. The so-formed ions displayed IRMPD features characteristic of a [benzene,NO](+) pi-complex structure, including a prominent band at 1963 cm(-)(1), within the range for the N-O bond stretching vibration of NO (1876 cm(-)(1)) and NO(+) (2344 cm(-)(1)). A quite distinct species is formed by electrospray ionization (ESI) of a methanol solution of nitrosobenzene. The ions transferred and stored in a Paul ion trap showed the IRMPD features of substituent protonated nitrosobenzene, the most stable among conceivable [C(6)H(6)NO](+) isomers according to computations. It is noteworthy that IRMPD is successful in allowing a discrimination between isomeric [C(6)H(6)NO](+) species, whereas high-energy collision-induced dissociation fails in this task. The [benzene,NO](+) pi-complex is characterized by IRMPD spectroscopy as an exemplary noncovalent ionic adduct between two important biomolecular moieties.     

Vibrational signatures of protonated, phosphorylated amino acids in the gas phase

Structural characterization of protonated phosphorylated serine, threonine, and tyrosine was performed using mid-infrared multiple photon dissociation (IRMPD) spectroscopy and density functional theory (DFT) calculations. The ions were generated and analyzed by an external electrospray source coupled to a Paul ion-trap type mass spectrometer. Their fragmentation was induced by the resonant absorption of multiple photons from a tunable free electron laser (FEL) beam. IRMPD spectra were recorded in the 900-1850 cm(-1) energy range and compared to the corresponding computed IR spectra. On the basis of the frequency and intensity of two independent bands in the 900-1400 cm(-1) energy range, it is possible to identify the phosphorylated residue. IRMPD spectra for a 12-residue fragment of stathmin in its phosphorylated and nonphosphorylated forms were also recorded in the 800-1400 cm(-1) energy range. The lack of spectral congestion in the 900-1300 cm(-1) region makes their distinction facile. Our results show that IRMPD spectroscopy may became a valuable tool for structural characterization of small phosphorylated peptides.     

Characterization of Cyclic N-Acyliminium Ions by Infrared Ion Spectroscopy

N-Acyliminium ions are highly reactive intermediates that are important for creating CC-bonds adjacent to nitrogen atoms. Here we report the characterization of cyclic N-acyliminium ions in the gas phase, generated by collision induced dissociation tandem mass spectrometry followed by infrared ion spectroscopy using the FELIX infrared free electron laser. Comparison of DFT calculated spectra with the experimentally observed IR spectra provided valuable insights in the conformations of the N-acyliminium ions.     

Structural connectivity of 18-Crown-6/H+/L-tryptophan noncovalent complexes in gas phase and in solution: Delineating host–guest–solvent interactions in solution from gas phase structures

We investigate the structural correlation of noncovalent crown ether/H⁺/L-tryptophan (CR/TrpH⁺) host–guest complexes in the solution phase with those in the gas phase generated through electrospray ionization/mass spectrometry (ESI/MS) techniques. We perform quantum chemical calculations to determine their structures, relative Gibbs free energies, and infrared spectra. We compare the calculated infrared (IR) spectra with the IR multiphoton dissociation (IRMPD) spectra observed for the 18-Crown-6/TrpH⁺ complex by Polfer and co-workers [J. Phys. Chem. A 2013, 117, 1181–1188] for assigning the IR bands. We observe that the carboxyl group remains “naked,” lacking hydrogen bonding with the CR unit in the gas phase, and that this most stable conformer originates from the corresponding lowest Gibbs free energy structure in solution. Based on these findings, we propose that gas phase host–guest complexes directly correlate with those in solution, reinforcing the possibility of obtaining invaluable information about host–guest–solvent interactions in solution from the structure of the host–guest pair in the gas phase.     

Gas-phase structure of a pi-allyl-palladium complex: efficient infrared spectroscopy in a 7 T Fourier transform mass spectrometer

The performance of infrared (IR) spectroscopy of gas-phase ions in a commercially available 7 T Fourier transform ion cyclotron resonance mass spectrometer has been characterized. A pi-allyl-palladium reactive intermediate, [(pi-allyl)Pd(P(C6H5)3)2]+, involved in the catalytic allylation of amine is studied. A solution of this transition metal complex is electrosprayed, and the IR multiple photon dissociation (IRMPD) spectrum of the mass-selected ions is recorded in two spectral ranges. The fingerprint spectrum (650-1550 cm(-1)) is recorded using the Orsay free-electron laser, and the dependence of the IRMPD efficiency on laser power and irradiation time is characterized. The DFT-calculated IR absorption spectrum of the [(pi-allyl)Pd(P(C6H5)3)2]+ complex shows good agreement with the experimental spectrum. The pi-interaction between the palladium and the allyl moiety is reflected by the assignment of the IRMPD bands, and the observed allylic CH2 wagging modes appear to form a sensitive probe for the pi-interaction strength in metal-pi-allyl complexes. This spectral assignment is further supported by the analysis of the different IRMPD photofragmentation patterns observed at different photon energies, which are found to result from wavelength-specific photofragmentations. Nine peaks are well-resolved in the experimental spectrum, for which the bandwidth (fwhm) is on the order of 15 cm(-1). Resonances with a calculated IR intensity of 5 km/mol or larger are shown to be amenable for IRMPD, indicating an excellent sensitivity of our new experimental setup. Finally, the IR spectrum has also been recorded in the CH stretching region (2950-3150 cm(-1)) using a tabletop IR optical parametric oscillator/amplifier (OPO/OPA) laser source.     

Infrared multiphoton dissociation spectroscopic analysis of peptides and oligosaccharides by using fourier transform ion cyclotron resonance mass spectrometry with a midinfrared free-electron laser

The fragmentation of peptides and oligosaccharides in the gas phase was investigated by means of electrospray ionization Fourier transform ion cyclotron resonance (FTICR) mass spectrometry coupled with dissociation by a laser-cleavage infrared multiphoton dissociation (IRMPD) technique. In this technique, an IR free-electron laser is used as a tunable source of IR radiation to cause cleavage of the ionized samples introduced into the FTICR cell. The gas-phase IRMPD spectra of protonated peptides (substance P and angiotensin II) and two sodiated oligosaccharides (sialyl Lewis X and lacto-N-fucopentaose III) were obtained over the IR scan range of 5.7-9.5 microm. In the IRMPD spectra for the peptide, fragment ions are observed as y/b-type fragment ions in the range 5.7-7.5 microm, corresponding to cleavage of the backbone of the parent amino acid sequence, whereas the spectra of the oligosaccharides have major peaks in the range 8.4-9.5 microm, corresponding to photoproducts of the B/Y type.     

Electronic and vibrational spectroscopy of intermediates in methane-to-methanol conversion by CoO+

At room temperature, cobalt oxide cations directly convert methane to methanol with high selectivity but very low efficiency. Two potential intermediates of this reaction, the [HO-Co-CH(3)](+) insertion intermediate and [H(2)O-Co=CH(2)](+) aquo-carbene complex are produced in a laser ablation source and characterized by electronic and vibrational spectroscopy. Reaction of laser-ablated cobalt cations with different organic precursors seeded in a carrier gas produces the intermediates, which subsequently expand into vacuum and cool. Ions are extracted into a time-of-flight mass spectrometer and spectra are measured via photofragment spectroscopy. Photodissociation of [HO-Co-CH(3)](+) in the visible and via infrared multiple photon dissociation (IRMPD) makes only Co(+) + CH(3)OH, while photodissociation of [H(2)O-Co=CH(2)](+) produces CoCH(2)(+) + H(2)O. The electronic spectrum of [HO-Co-CH(3)](+) shows progressions in the excited state Co-C stretch (335 cm(-1)) and O-Co-C bend (90 cm(-1)); the IRMPD spectrum gives ν(OH) = 3630 cm(-1). The [HO-Co-CH(3)](+)(Ar) complex has been synthesized and its vibrational spectrum measured in the O-H stretching region. The resulting spectrum is sharper than that obtained via IRMPD and gives ν(OH) = 3642 cm(-1). Also, an improved potential energy surface for the reaction of CoO(+) with methane has been developed using single point energies calculated by the CBS-QB3 method for reactants, intermediates, transition states and products.     

Protonation Preferentially Stabilizes Minor Tautomers of the Halouracils: IRMPD Action Spectroscopy and Theoretical Studies

Tautomerization induced by protonation of halouracils may increase their efficacy as anti-cancer drugs by altering their reactivity and hydrogen bonding characteristics, potentially inducing errors during DNA and RNA replication. The gas-phase structures of protonated complexes of five halouracils, including 5-fluorouracil, 5-chlorouracil, 5-bromouracil, 5-iodouracil, and 6-chlorouracil are examined via infrared multiple photon dissociation (IRMPD) action spectroscopy and theoretical electronic structure calculations. IRMPD action spectra were measured for each complex in the IR fingerprint region extending from ~1000 to 1900?cm(-1) using the free electron laser (FELIX). Correlations are made between the measured IRMPD action spectra and the linear IR spectra for the stable low-energy tautomeric conformations computed at the B3LYP/6-311+G(2d,2p)//B3LYP/6-31G* level of theory. Absence of an intense band(s) in the IRMPD spectrum arising from the carbonyl stretch(es) that are expected to appear near 1825?cm(-1) provides evidence that protonation induces tautomerization and preferentially stabilizes alternative, noncanonical tautomers of these halouracils where both keto functionalities are converted to hydroxyl groups upon binding of a proton. The weak, but measurable absorption, which does occur for these systems near 1835?cm(-1) suggests that in addition to the ground-state conformer, very minor populations of excited, low-energy conformers that contain keto functionalities are also present in these experiments.     

Infrared spectroscopy of ionized corannulene in the gas phase

The gas-phase infrared spectra of radical cationic and protonated corannulene were recorded by infrared multiple-photon dissociation (IRMPD) spectroscopy using the IR free electron laser for infrared experiments. Electrospray ionization was used to generate protonated corannulene and an IRMPD spectrum was recorded in a Fourier-transform ion cyclotron resonance mass spectrometer monitoring H-loss as a function of IR frequency. The radical cation was produced by 193-nm UV photoionization of the vapor of corannulene in a 3D quadrupole trap and IR irradiation produces H, H(2), and C(2)H(x) losses. Summing the spectral response of the three fragmentation channels yields the IRMPD spectrum of the radical cation. The spectra were analyzed with the aid of quantum-chemical calculations carried out at various levels of theory. The good agreement of theoretical and experimental spectra for protonated corannulene indicates that protonation occurs on one of the peripheral C-atoms, forming an sp(3) hybridized carbon. The spectrum of the radical cation was examined taking into account distortions of the C(5v) geometry induced by the Jahn-Teller effect as a consequence of the degenerate (2)E(1) ground electronic state. As indicated by the calculations, the five equivalent C(s) minima are separated by marginal barriers, giving rise to a dynamically distorted system. Although in general the character of the various computed vibrational bands appears to be in order, only a qualitative match to the experimental spectrum is found. Along with a general redshift of the calculated frequencies, the IR intensities of modes in the 1000-1250 cm(-1) region show the largest discrepancy with the harmonic predictions. In addition to CH "in-plane" bending vibrations, these modes also exhibit substantial deformation of the pentagonal inner ring, which may relate directly to the vibronic interaction in the radical cation.     

Infrared spectra of protonated uracil, thymine and cytosine.

The gas-phase structures of protonated uracil, thymine, and cytosine are probed by using mid-infrared multiple-photon dissociation (IRMPD) spectroscopy performed at the Free Electron Laser facility of the Centre Laser Infrarouge d'Orsay (CLIO), France. Experimental infrared (IR) spectra are recorded for ions that were generated by electrospray ionization, isolated, and then irradiated in a quadrupole ion trap; the results are compared to the calculated infrared absorption spectra of the different low-lying isomers (computed at the B3LYP/6-31++G(d,p) level). For each protonated base, the global energy minimum corresponds to an enolic tautomer, whose infrared absorption spectrum matched very well with the experimental IRMPD spectrum, with the exception of a very weak IRMPD signal observed at about 1800 cm(-1) in the case of the three protonated bases. This signal is likely to be the signature of the second-energy-lying oxo tautomer. We thus conclude that within our experimental conditions, two tautomeric ions are formed which coexist in the quadrupole ion trap.     

Infrared Multiple Photon Dissociation Action Spectroscopy and Theoretical Studies of Triethyl Phosphate Complexes: Effects of Protonation and Sodium Cationization on Structure

The gas-phase structures of protonated and sodium cationized complexes of triethyl phosphate, [TEP + H]⁺ and [TEP + Na]⁺, are examined via infrared multiple photon dissociation (IRMPD) action spectroscopy using tunable IR radiation generated by a free electron laser, a Fourier transform ion cyclotron resonance mass spectrometer with an electrospray ionization source, and theoretical electronic structure calculations. Measured IRMPD action spectra are compared to linear IR spectra calculated at the B3LYP/6-31 G(d,p) level of theory to identify the structures accessed in the experimental studies. For comparison, theoretical studies of neutral TEP are also performed. Sodium cationization and protonation produce changes in the central phosphate geometry, including an increase in the alkoxy ∠OPO bond angle and shortening of the alkoxy P–O bond. Changes associated with protonation are more pronounced than those produced by sodium cationization.     

Infrared spectra of protonated neurotransmitters: dopamine

The infrared (IR) spectrum of the isolated protonated neurotransmitter dopamine was recorded in the fingerprint range (570-1880 cm(-1)) by means of IR multiple photon dissociation (IRMPD) spectroscopy. The spectrum was obtained in a Fourier transform ion cyclotron resonance mass spectrometer equipped with an electrospray ionization source, which was coupled to a free electron laser (FEL). The spectroscopic studies are complemented by quantum chemical calculations at the B3LYP and MP2 levels of theory using the cc-pVDZ basis set. Several low-energy isomers with protonation occurring at the amino group are predicted in the energy range 0-50 kJ mol(-1). Good agreement between the measured IRMPD spectrum and the calculated linear absorption spectra is observed for the two gauche conformers lowest in energy (ΔE) and free energy (ΔG) at both levels of theory, denoted g-1 and g+1. Minor contributions of higher lying gauche isomers cannot be ruled out spectroscopically but their calculated energies suggest only minor population in the sampled ion cloud. In all these gauche structures, one of the three protons of the ammonium group is pointing toward the catechol subunit, thereby maximizing the intramolecular NH-π interaction of the positive charge with the aromatic ring. In total, 16 distinct vibrational bands are observed in the IRMPD spectrum and assigned to individual normal modes of the energetically most stable g-1 conformer, with deviations of less than 24 cm(-1) (average 11 cm(-1)) between measured and calculated frequencies. Comparison with neutral dopamine reveals the effects of protonation on the geometric and electronic structure.     

Mass spectrometric characterization and gas-phase chemistry of self-assembling supramolecular squares and triangles

A detailed mass spectrometric characterization of self-assembling polynuclear metal complexes is described. The complexes can only be ionized as intact species under a surprisingly narrow range of conditions by electrospray ionization. Comparison with the results from NMR experiments shows that several solution-phase features of these squares and triangles (such as trends in bond energies, ligand-exchange reactions, or square-triangle equilibria) are qualitatively reflected in the gas-phase data. Consequently, mass spectrometry represents a valuable method for the characterization of these compounds. Nevertheless, the formation of unspecific aggregates during the ionization process occurs and its implications are discussed. Beyond the chemistry in solution, the fragmentation pathways of these complexes in the gas phase have been studied by infrared multiphoton dissociation (IRMPD) experiments. The results of IRMPD studies allow us to draw conclusions with respect to the structure and energetics of fragmentation products. In this tandem MS experiment, reaction pathways can be observed directly which can hardly be analyzed in solution. According to these results, the equilibration of triangles and squares involves the supramolecular analogue of a neighboring-group effect.     

Mid-infrared vibrational spectra of discrete acetone-ligated cerium hydroxide cations

Cerium(iii) hydroxy reactive sites are responsible for several important heterogeneous catalysis processes, and understanding the reaction chemistry of substrate molecules like CO, H(2)O, and CH(3)OH as they occur in heterogeneous media is a challenging task. We report here the first infrared spectra of model gas-phase cerium complexes and use the results as a benchmark to assist evaluation of the accuracy of ab initio calculations. Complexes containing [CeOH](2+) ligated by three- and four-acetone molecules were generated by electrospray ionization and characterized using wavelength-selective infrared multiple photon dissociation (IRMPD). The C[double bond, length as m-dash]O stretching frequency for the [CeOH(acetone)(4)](2+) species appeared at 1650 cm(-1) and was red-shifted by 90 cm(-1) compared to unligated acetone. The magnitude of this shift for the carbonyl frequency was even greater for the [CeOH(acetone)(3)](2+) complex: the IRMPD peak consisted of two dissociation channels, an initial elimination of acetone at 1635 cm(-1), and elimination of acetone concurrent with a charge separation producing [CeO(acetone)](+) at 1599 cm(-1), with the overall frequency centered at 1616 cm(-1). The increasing red shift observed as the number of acetone ligands decreases from four to three is consistent with transfer of more electron density per ligand in the less coordinated complexes. The lower frequency measured for the elimination/charge separation process is likely due to a combination of: (a) anharmonicity resulting from population of higher vibrational states, and (b) absorption by the initially formed photofragment [CeOH(acetone)(2)](2+). The C-C stretching frequency in the complexes is also influenced by coordination to the metal: it is blue-shifted compared to bare acetone, indicating a slight strengthening of the C-C bond in the complex, with the intensity of the absorption decreasing with decreasing ligation. Density functional theory (DFT) calculations using three different functionals (VWN, B3LYP, and PBE0) were used to predict the infrared spectra of the complexes. Calculated frequencies for the carbonyl stretch are within 40 cm(-1) of the IRMPD of the three-acetone complex measured using the single acetone loss, and within 60 cm(-1) of the measurement for the four-acetone complexes. The B3LYP functionals provided the best agreement with the measured spectra, with the VWN modestly lower and PBE0 modestly higher. The C-C stretching frequencies calculated using B3LYP are higher in energy than the measured values by approximately 30 cm(-1), and reproduce the observed trend which shows that the C-C stretching frequency decreases with increasing ligation. Agreement between C-C frequency and calculation was not as good using the VWN functional, but still within 70 cm(-1). The results provide an evaluation of changes in the acceptor properties of the metal center as ligands are added, and of the utility of DFT for modeling f-block coordination complexes.     

Anion Recognition by Uranyl–Salophen Derivatives as Probed by Infrared Multiple Photon Dissociation Spectroscopy and Ab Initio Modeling

The vibrational features and molecular structures of complexes formed by a series of uranyl–salophen receptors with simple anions, such as Cl^?, H^?, and HCOO^?, have been investigated in the gas phase. Spectra of the anionic complexes were studied in the $\tilde \nu $ =800–1800 cm^?1 range by mass‐selective infrared multiple photon dissociation (IRMPD) spectroscopy with a continuously tunable free‐electron laser. The gas‐phase decarboxylation of the formate adducts produces uranyl–salophen monohydride anions, which have been characterized for the first time and reveal a strong U?H bond, the nature of which has been elucidated theoretically. The spectra are in excellent agreement with the results obtained from high‐quality ab initio calculations, which provided the structure and binding features of the anion–receptor complexes.     

Infrared absorption features of gaseous isopropyl carbocations.

C3H7+ ions were formed in the cell of a Fourier transform ion cyclotron resonance mass spectrometer and assayed by their multi-photon dissociation (MPD) behavior, triggered by the absorption of tunable IR radiation from a free-electron laser source providing a high fluence. The derived experimental IRMPD spectrum, which reflects the active vibrational modes of the ion, was compared with the IR spectra calculated for the optimized structures of the most-stable species on the C3H7+ potential energy surface, namely, a chiral iC3H7+ ion of C2 symmetry and an asymmetric corner-protonated cyclopropane, cC3H7+. The significant features in the IRMPD spectra of both the unlabeled and the perdeuterated ions obtained by ionization and fragmentation of isobutane or 2-chloro[D7]propane confirm the presence of the isopropyl cation, the ground-state isomer, whose IR spectroscopic features can thus be comparatively checked in the gas phase and in condensed superacid media. Details of the IRMPD features are suggested to result from the nearly barrierless interconversion of the two C2 enantiomers.     

Infrared spectroscopy of divalent zinc and cadmium crown ether systems

The gas-phase structures of transition-metal dication (Zn(2+) and Cd(2+)) complexes with varying sized crown ethers, 12-crown-4 (12c4), 15-crown-5 (15c5), and 18-crown-6 (18c6), are investigated using infrared multiple photon dissociation (IRMPD) spectroscopy and quantum mechanical calculations. The measured spectra span the 750-1600 cm(-1) infrared range, utilizing light generated by a free electron laser, and are compared to predicted spectra calculated at the B3LYP/6-311+G(d,p) or B3LYP/Def2TZVP levels of theory. Spectra with the largest and most flexible crown ether, 18c6, indicate that the crown is highly distorted, wrapping in a tight cage-like structure around both dications studied. The 15c5 adopts a folded orientation for the Zn(2+) complex yet is almost planar when complexed with the larger Cd(2+) ion. The Zn(2+)(12c4) spectrum has bands appearing at lower frequencies than the other systems, consistent with an open conformation such that the metal is exposed, lying above the center of mass of the crown ether ring. The open structures of the Zn(2+)(12c4) and Cd(2+)(15c5) complexes have implications for solvent interactions in the condensed phase. The conformation of each metal-crown complex is highly dependent on metal size, charge, and crown ether flexibility, such that a delicate balance of minimizing the metal-oxygen bond lengths but maximizing the oxygen-oxygen distances arises. These competing influences are reflected in both the spectra and lowest-energy conformations.     

Infrared Multiple Photon Dissociation Action Spectroscopy and Theoretical Studies of Diethyl Phosphate Complexes: Effects of Protonation and Sodium Cationization on Structure

The gas-phase structures of deprotonated, protonated, and sodium-cationized complexes of diethyl phosphate (DEP) including [DEP − H]⁻, [DEP + H]⁺, [DEP + Na]⁺, and [DEP − H + 2Na]⁺ are examined via infrared multiple photon dissociation (IRMPD) action spectroscopy using tunable IR radiation generated by a free electron laser, a Fourier transform ion cyclotron resonance mass spectrometer (FT-ICR MS) with an electrospray ionization (ESI) source, and theoretical electronic structure calculations. Measured IRMPD spectra are compared to linear IR spectra calculated at the B3LYP/6-31G(d,p) level of theory to identify the structures accessed in the experimental studies. For comparison, theoretical studies of neutral complexes are also performed. These experiments and calculations suggest that specific geometric changes occur upon the binding of protons and/or sodium cations, including changes correlating to nucleic acid backbone geometry, specifically P–O bond lengths and ∠OPO bond angles. Information from these observations may be used to gain insight into the structures of more complex systems, such as nucleotides and solvated nucleic acids.