Di‐μ‐chlorido‐bis[chlorido(4′‐p‐tolyl‐2,2′:6′,2′′‐terpyridine‐κ3N,N′,N′′)nickel(II)]: a supramolecular system constructed by C—H...Cl interactions

The title complex, [Ni₂Cl₄(C₂₂H₁₇N₃)₂], was synthesized solvothermally. The molecule is a centrosymmetric dimer with the unique Ni^II centre in a distorted octahedral N₃Cl₃ coordination environment. The chloride bridges are highly asymmetric. In the 4′‐p‐tolyl‐2,2′:6′,2′′‐terpyridine ligand, the p‐tolyl group is perfectly coplanar with the attached pyridine ring, and this differs from the situation found in previously reported compounds; however, there are no π–π interactions between the ligands. The terminal Cl atom forms four intermolecular C—H...Cl hydrogen bonds with one methyl and three methine groups. The methyl group also forms intermolecular C—H...π interactions with a pyridine ring. These nonclassical hydrogen bonds extend the molecule into a three‐dimensional network.     

Electron impact induced water elimination from hydroxyamides. 1—N-(2′-hydroxyethyl)piperidone-2 and N-3′-hydroxypropyl piperidone-2

The main process of the electron impact induced water elimination of the title compounds takes a reaction course comprising several individual steps. A characteristic neighbouring group participation of the carbonyl function is involved, onto which a hydrogen is transferred in a first rate-determining reaction step. This rearranged hydrogen is finally lost together with the hydroxyl group. The reaction of N-(2′-hydroxyethyl)piperidone follows what seems to be a [1,1] elimination whereas the H₂O elimination from N-(3′-hydroxypropyl)piperidone represents a formal [1,2] elimination.     

A conformational analysis of 3′-azido-3′-deoxythymidine

An extensive conformational analysis of 3′-azido-3′-deoxythymidine (AZT) was performed at the semiempirical AM1 level with full relaxation of all geometric parameters and careful consideration of furan puckering and the rotational states of the thymine—furan, furan—azide, furan—methylene, and methylene—hydroxyl bonds. The search located 70 conformers, 21 of which have relative energies within 2.5 kcal/mol of the global minimum. Several geometric features, including various forms of hydrogen bonding, within this selected lowenergy subset were examined in terms of their relative contributions to the conformational states of AZT. Hydrogen bonding of thymine's position 2 carbonyl oxygen atom to the hydroxymethyl group (O₂? ;HO), which until recently has not been mentioned in the literature, is observed in a few low-energy AM1 conformations; however, this form is less favored at the AM1 level than the usually depicted modes involving the thymine moiety with the oxygen atoms of the hydroxyl and furan groups (H₆? ;OH and H₆? O_fur, as observed in the two crystallographically independent structures), as well as that involving the hydroxyl hydrogen and furan oxygen atoms (OH? O_fur, which also has not been mentioned for AZT in the literature until recently). The AM1-optimized geometries agree more closely with nuclear magnetic resonance data than with crystallographic structures and bear little resemblance to molecular mechanics results. The present study shows no evidence of a single dominant conformation or single structural parameter that determines AZT's conformational states. In contrast to our previous analogous study of cGMP, this computational study of AZT does not show strong evidence of a syn conformation with hydrogen bonding involving the base.     

Poly[triaqua(μ4‐4‐carboxybenzenesulfonato‐κ4O:O′:O′′:O′′′)(4‐carboxybenzenesulfonato‐κO)strontium(II)]

This study presents the coordination modes and two‐dimensional network of a novel strontium(II) coordination polymer, [Sr(C₇H₅O₅S)₂(H₂O)₃]_n. The eight‐coordinate Sr²⁺ ion is in a distorted bis‐disphenoidal coordination environment, surrounded by four sulfonate and one carboxyl O atom from five benzenesulfonate ligands, two of which are symmetry unique, and by three O atoms from three independent aqua ligands. The compound exhibits a monolayer structure with coordination bonds within and hydrogen bonds between the layers. The μ₄ acid ligand bridges the metal ions in two dimensions to form a thick undulating monolayer with a hydrophobic interior and hydrophilic surfaces. A second independent monoanion is arranged outward from both sides of the monolayer and serves to link adjacent monolayers via carboxyl–water and water–carboxyl hydrogen bonds.     

3′-(1,2,3-Triazol-1-yl)-2′,3′-dideoxythymidine and 3′-(1,2,3-triazol-1-yl)-2′,3′-dideoxyuridine

Cycloaddition of different acetylenic compounds on the azido function of 3′-azido-2′,3′-dideoxythymidine and 3′-azido-2′,3′-dideoxyuridine afforded products with a 1,2,3-triazol-1-yl substituent in the 3′-position. In contrast with the parent compounds, these triazolyl derivatives had no appreciable activity against human immunodeficiency virus (HIV-1).     

(S,S)‐4′′‐Cyano‐7,7′′‐dimethoxy‐3′,6′‐dioxodispiro[indane‐2,2′‐piperazine‐5′,2′′‐indane]‐4‐carboxamide methanol solvate: interrupting the amide‐to‐amide hydrogen‐bonded tape

The title methanol solvate, C₂₄H₂₂N₄O₅·CH₃OH, forms an extended three‐dimensional hydrogen‐bonded structure, assisted by the presence of several good donor and acceptor sites. It shows none of the crystal packing features typically expected of piperazinediones, such as amide‐to‐amide R₂²(8) hydrogen bonding. In this structure the methanol solvent appears to play only a space‐filling role; it is not involved in any hydrogen bonding and instead is disordered over several sites. This study reports, to the best of our knowledge, the first crystal structure of an indane‐containing piperazinedione compound which exhibits a three‐dimensional hydrogen‐bonded structure formed by classical (N—H...O and N—H...N) hydrogen‐bonding interactions.     

2,2′‐Isopropyl­idene­diphenol

The planar benzene rings in the title compound, C₁₅H₁₆O₂, are inclined at an angle of 82.61 (9)° to one another. There are two intra­molecular hydrogen bonds of types O—H⋯π and C—H⋯O. The mol­ecules are linked by strong O—H⋯O hydrogen bonds into a one‐dimensional network, which is compared with that of related compounds.     

Packing effects in 4,4′‐bis(4‐hydroxy­butyl)‐2,2′‐bi­pyridine and 4,4′‐bis(4‐bromo­butyl)‐2,2′‐bi­pyridine

Structure analyses of 4,4′‐bis(4‐hydroxy­butyl)‐2,2′‐bi­pyridine, C₁₈H₂₄N₂O₂, (I), and 4,4′‐bis(4‐bromo­butyl)‐2,2′‐bi­pyridine, C₁₈H₂₂Br₂N₂, (II), reveal intermolecular hydrogen bonding in both compounds. For (I), O—H·N intermolecular hydrogen bonding leads to the formation of an infinite two‐dimensional polymer, and π stacking interactions are also observed. For (II), C—H·N intermolecular hydrogen bonding leads to the formation of a zigzag polymer. The two compounds crystallize in different crystal systems, but both mol­ecules possess C_i symmetry, with one half mol­ecule in the asymmetric unit.     

New heterocyclic derivatives of 1′- and 3′-amino-5′,6′,7′,8′-tetrahydro-2′-acetonaphthones

The preparation of 1′-and 3′-amino-5′,6′,7′,8′-tetrahydro-2′-acetonaphthones (IIIa and IIIb) is described, by reduction of the low temperature nitration products of 5′,6′,7′,8′-tetrahydro-2′-acetonaphtone (I). The structures of the nitro isomers (IIa and IIb), and the reduction products, IIIa and IIIb, were elucidated spectroscopically. By known reactions, a series of new heterocyclic compounds prepared from the o-aminoketones, IIIa and IIIb, resulted in two series of new heterocyclic compounds.     

Synthesis of Some Novel Phenyl Substituted Oxothiazolidin- 1’’,3’’,4’’-thiadiazolo-[3’,4’-b]thiazoline of 3β-Substituted Cholestane

Three title compounds 4a—4c have been synthesized by the cyclodehydration of 1’-benzylidine-4’-(3β-substituted-5α-cholestane-6-yl)thiosemicarbazones 2a—2c with thioglycolic acid followed by the treatment with cold conc. H2SO4 in dioxane. The compounds 2a—2c were prepared by condensation of 3β-substituted-5α-cholestan- 6-one-thiosemicarbazones 1a—1c with benzaldehyde. These thiosemicarbazones 1a—1c were obtained by the reaction of corresponding 3β-substituted-5α-cholestan-6-ones with thiosemicarbazide in the presence of few drops of conc. HCl in methanol. The structures of the products have been established on the basis of their elemental, analytical and spectral data.     

3,3′,5,5′‐Tetramethyl‐4,4′‐bipyrazole–pentafluorophenol (2/3)

In the title compound, 2C₁₀H₁₄N₄·3C₆HF₅O, one of the pentafluorophenol molecules resides on a mirror plane bisecting the O...F axis. The components aggregate by N—H...N, N—H...O and O—H...N hydrogen bonds involving equal disordering of the H atoms into molecular ensembles based on a 2:1 pyrazole–phenol cyclic pattern [O...N = 2.7768 (16) Å and N...N = 2.859 (2) Å], crosslinked into one‐dimensional columns via hydrogen bonding between the outer pyrazole groups and additional pentafluorophenol molecules. The latter yields a 1:1 pyrazole–phenol catemer with alternating strong O—H...N [2.5975 (16) Å] and weaker N—H...O [2.8719 (17) Å] hydrogen bonds. This is the first reported molecular adduct of a pentafluorinated phenol and a nitrogen base, and suggests the utility of highly acidic phenols and pyrazoles for developing hydrogen‐bonded cocrystals.     

Non‐mutagenic organic pigment intermediates. II. Isomorphous 2,2′‐di­chloro‐5,5′‐dipropoxy­benzidine and 2,2′‐di­methyl‐5,5′‐dipropoxy­benzidine

The title compounds, C₁₈H₂₂Cl₂N₂O₂ and C₂₀H₂₈N₂O₂, respectively, are isomorphous. The mol­ecules lie at general positions in the unit cell. In each structure, chemically equivalent but crystallographically inequivalent amine N atoms exhibit different degrees of pyramidalization. The structures exhibit weak N—H⋯N hydrogen bonding, which is influenced by the differences in hybridization around the amine N atoms. The torsion angles across the bi­phenyl linkage for the two compounds are 67.2 (2) and 68.3 (3)°.     

μ‐2,2′,6,6′‐Tetramethyl‐4,4′‐bipyridine‐κ2N1:N1′‐bis[(diethylenetriamine‐κ3N,N′,N′′)palladium(II)] tetranitrate

The title compound, [Pd₂(C₄H₁₃N₃)₂(C₁₄H₁₆N₂)](NO₃)₄, comprises discrete tetracationic dumbbell‐type dinuclear complex molecules and noncoordinating nitrate anions. Two Pd(dien)²⁺ moieties (dien is diethylenetriamine) are joined by the rigid linear exo‐bidentate bridging 2,2′,6,6′‐tetramethyl‐4,4′‐bipyridine ligand to form the dinuclear complex, which lies across a centre of inversion in the space group P2₁/n, so that the rings in the 2,2′,6,6′‐tetramethyl‐4,4′‐bipyridine bridging ligand are parallel. In the crystal, the primary and secondary amino groups of the dien ligand act as hydrogen‐bond donors towards the nitrate anions to form a three‐dimensional hydrogen‐bond network.     

2′,4′‐Di­hydroxy‐3‐methoxy‐α,β‐di­hydro­chalcone and 2′,4‐di­hydroxy‐α,β‐di­hydro­chalcone: supramolecular structures formed by O—H⋯O,C—H⋯O and stacking interactions

The crystal structures of 2′,4′‐di­hydroxy‐3‐methoxy‐α,β‐di­hydro­chalcone, C₁₆H₁₆O₄, and 2′,4‐di­hydroxy‐α,β‐di­hydro­chalcone, C₁₅H₁₄O₃, have been determined. In both compounds, the structure consists of two nearly planar six‐membered aromatic rings connected by a propanal chain, which is bent in the methoxy compound and almost straight in the other compound. In the crystal structures, the molecular units of both compounds are linked by O—H⋯O hydrogen bonds to form infinite one‐dimensional chains. Hydro­gen bonds and C—H⋯O contacts in the crystal structures were studied by topological analysis of charge density based on Hartree–Fock calculations. Almost all of the investigated C—H⋯O contacts should be characterized as weak hydrogen bonds.     

Bis[(dihydrogen pyrophosphato‐κ2O,O′)(2,2′:6′,2′′‐terpyridine‐κ3N,N′,N′′)copper(II)] 4.5‐hydrate

The title copper complex, [Cu(H₂P₂O₇)(C₁₅H₁₁N₃)]₂·4.5H₂O, consists of two very similar independent Cu(Tpy)H₂P₂O₇ monomeric units (Tpy is 2,2′:6′,2′′‐terpyridine) plus four and a half water molecules of hydration, some of which are disordered. Tpy units bind through the usual triple bite via their N atoms, and the H₂P₂O₇²⁻ anions coordinate through two O atoms from two different phosphate units. Each independent CuN₃O₂ chromophore can be described as a slightly deformed square pyramid, with one of them having a sixth, semicoordinated, O atom from a centrosymmetrically related CuN₃O₂ unit in a weakly bound second apical position suggesting an octahedral environment for the cation and weak dimerization of the molecule. The two independent complex molecules are connected via two strong O—H...O interactions between the phosphate groups to form hydrogen‐bonded dinuclear units, further linked into [111] columns, resulting in a very complex three‐dimensional supramolecular structure through a variety of classical and nonclassical hydrogen bonds, as well as π–π interactions.     

3′-Methylsulfinyl-3,4′-diquinolinyl sulfides

Reactions of 4-methoxy- or 1,4-dihydro-4-oxo-3′-methylthio-3,4′-diquinolinyl sulfides 1 and 7 with a nitrating mixture ran as the 3′-methylthio group 5-mono-oxidation followed by C₆- and C₈-nitration and led to the mixture composed of products 3, 4, 5 and 6 (in the case of substrate 1 ) or compounds 5 and 6 (for substrate 7 ). In the reaction with hydrochloric acid 4-methoxy-3′-methylsulfinyl-3,4′-diquinolinyl sulfides 3 and 4 could be hydrolysed to 3′-methylsulfinyl-4(1H)-quinolinones 5 or 6 respectively, the methylsulfinyl group remaining unaffected.     

4,1′,6′‐Trichloro‐4,1′,6′‐trideoxysucrose monohydrate

At 160 K, the gluco­pyran­osyl ring in 1,6‐di­chloro‐1,6‐di­deoxy‐β‐d ‐fructo­furan­osyl 4‐chloro‐4‐deoxy‐α‐d ‐gluco­pyran­oside monohydrate, C₁₂H₁₉Cl₃O₈·H₂O, has a near ideal ⁴C₁ chair conformation, while the fructo­furan­osyl ring has a ⁴T₃ conformation. The conformation of the sugar mol­ecule is quite different to that of sucralose, particularly in the conformation about the glycosidic linkage, which affects the observed pattern of intramolecular hydrogen bonds. A complex series of intermolecular hydrogen bonds links the sugar and water mol­ecules into an infinite three‐dimensional framework.     

N,N′,N′′,N′′′‐Tetraethylterephthalamidinium bis(tetrazolate)

The crystal structure of the title 2:1 salt of tetrazole and a substituted terephthal­amidine, C₁₆H₂₈N₄²⁺·2CHN₄^?, contains an infinite network of hydrogen bonds, with short N?N distances of 2.820 (2) and 2.8585 (19) Å between the tetrazolate anion and the amidinium cation. Involvement of the lateral N atoms of the tetrazole in the hydrogen bonding appears to be a typical binding pattern for the tetrazolate anion.     

2′,3′‐Dehydrosalannol

The title compound, methyl (2aS,3R,5R,5aS,6S,6aS,8R,9aS,10aR,10bR,10cS)‐8‐(3‐furyl)‐2a,4,5,5a,6,6a,8,9,9a,10a,10b,10c‐dodeca­hydro‐3‐hydroxy‐2a,5a,6a,7‐tetra­methyl‐5‐(3‐methylbut‐2‐enoyl­oxy)‐2H,3H‐cyclo­penta­[4′,5′]­furo­[2′,3′:6,5]benzo[cd]­isobenzo­furan‐6‐acetate, C₃₂H₄₂O₈, was isolated from uncrushed green leaves of Azadirachta indica A. Juss (neem) and has been found to possess antifeedant activity against Spodptera litura. The conformations of the functional groups are similar to those of 3‐des­acetyl­salannin, which was isolated from neem kernels. The mol­ecules are linked into chains by intermolecular O—H?O hydrogen bonds.