Sapphyrin Supramolecules through C−H⋅⋅⋅S and C−H⋅⋅⋅Se Hydrogen Bonds—First Structural Characterization of meso- Arylsapphyrins Bearing Heteroatoms

An unprecedented coupling reaction of heteroatom-containing tripyrranes leads to the formation of core-modified sapphyrins 1 and 2 , which self-assemble in the solid state to form supramolecular ladders. Weak C−H⋅⋅⋅S and C−H⋅⋅⋅Se hydrogen-bonding interactions in addition to C−H⋅⋅⋅N hydrogen bonds are responsible for the observed structures.     

Torsional and Electronic Factors Control the C−H⋅⋅⋅O Interaction

The precise role of non‐conventional hydrogen bonds such as the C?H???O interaction in influencing the conformation of small molecules remains unresolved. Here we survey a series of β‐turn mimetics using X‐ray crystallography and NMR spectroscopy in conjunction with quantum calculation, and conclude that favourable torsional and electronic effects are important for the population of states with conformationally influential C?H???O interactions. Our results also highlight the challenge in attempting to deconvolute a myriad of interdependent noncovalent interactions in order to focus on the contribution of a single one. Within a small molecule that is designed to resemble the complexity of the environment within peptides and proteins, the interplay of different steric burdens, hydrogen‐acceptor/‐donor properties and rotational profiles illustrate why unambiguous conclusions based solely on NMR chemical shift data are extremely challenging to rationalize.     

Structure of Amido Pyridinium Betaines: Persistent Intermolecular C−H⋅⋅⋅N Hydrogen Bonding in Solution

A hydrogen bond of the type C?H???X (X=O or N) is known to influence the structure and function of chemical and biological systems in solution. C?H???O hydrogen bonding in solution has been extensively studied, both experimentally and computationally, whereas the equivalent thermodynamic parameters have not been enumerated experimentally for C?H???N hydrogen bonds. This is, in part, due to the lack of systems that exhibit persistent C?H???N hydrogen bonds in solution. Herein, a class of molecule based on a biologically active norharman motif that exhibits unsupported intermolecular C?H???N hydrogen bonds in solution has been described. A pairwise interaction leads to dimerisation to give bond strengths of about 7 kJ mol^?1 per hydrogen bond, which is similar to chemically and biologically relevant C?H???O hydrogen bonding. The experimental data is supported by computational work, which provides additional insight into the hydrogen bonding by consideration of electrostatic and orbital interactions and allowed a comparison between calculated and extrapolated NMR chemical shifts.     

OH⋅⋅⋅N and CH⋅⋅⋅O Hydrogen Bonds Control Hydration of Pivotal Tropane Alkaloids: Tropinone⋅⋅⋅H2O Complex

The effect of monohydration in equatorial/axial isomerism of the common motif of tropane alkaloids is investigated in a supersonic expansion by using Fourier‐transform microwave spectroscopy. The rotational spectrum reveals the equatorial isomer as the dominant species in the tropinone???H₂O complex. The monohydrated complex is stabilized primarily by a moderate O?H???N hydrogen bond. In addition, two C?H???O weak hydrogen bonds also support this structure, blocking the water molecule and avoiding any molecular dynamics in the complex. The water molecule acts as proton donor and chooses the ternary amine group over the carbonyl group as a proton acceptor. The experimental work is supported by theoretical calculations; the accuracy of the B3LYP, M06‐2X, and MP2 methods is also discussed.     

Konformativer Umbau von Porphyrinen als Rezeptoren mit schaltbaren N‐H⋅⋅⋅X‐Bindungsmodi

Die Selektivität und funktionale Variabilität von Porphyrinkofaktoren basiert typischerweise auf der Substratbindung durch Metalloporphyrine, wobei die Pyrrolstickstoffatome nur zur Chelatisierung der Metallionen dienen. In einem ersten Schritt zu Porphyrinzentren mit “enzymähnlicher” Aktivität zeigt eine strukturelle und spektroskopische Untersuchung der Substratbindung im Kern jedoch, dass ein sattelverbogenes Porphyrin mit peripheren Aminorezeptorgruppen ( 1 , 2,3,7,8,12,13,17,18‐Oktaethyl‐5,10,15,20‐tetrakis(2‐aminophenyl)porphyrin), abhängig von der Azidität der Lösung, Analyte in einer schaltbaren Weise koordiniert. Das supramolekulare Ensemble weist eine hohe Affinität und Selektivität für das Pyrophosphatanion (2.26±0.021)×10⁹ m ^?1 auf. ¹H‐NMR‐Spektroskopie liefert Einblicke in den wahrscheinlichen Bindungsmodus und erlaubt die Charakterisierung der Atropisomere, deren Struktur auch durch Röntgenstrukturanalysen aufgeklärt wurde.     

C—H⋯N and C—H⋯π interactions in 2‐ethoxy‐4,6‐diphenylpyridine‐3‐carbonitrile

The title compound, C₂₀H₁₆N₂O, has two mol­ecules in the asymmetric unit and the crystal structure shows that the central pyridine ring of each mol­ecule has a flat boat conformation. The terminal C atom in one of the mol­ecules is disordered over two positions, with relative occupancies of 0.594 (14) and 0.398 (14). Intermolecular C—H?N and C—H?π interactions and π–π stacking, along with intramolecular C—H?N and C—H?π interactions, help to stabilize the structure.     

Fluoride Anion Complexation by a Triptycene‐Based Distiborane: Taking Advantage of a Weak but Observable C−H⋅⋅⋅F Interaction

Fluoride anion complexation impacts a number of areas ranging from sensing to nucleophilic fluorination chemistry. Described here is a new bidentate Lewis acid consisting of two stiborane units connected by a 1,8‐triptycenediyl backbone. This neutral derivative captures fluoride with an unprecedented affinity for a neutral, water‐compatible Lewis acid. Structural, spectroscopic and computational studies demonstrate that fluoride anion binding is assisted by the formation of a C−H⋅⋅⋅F hydrogen bond which involves a methine group of the 1,8‐triptycenediyl backbone.     

Spectroscopic and Ab Initio Investigation of C−H⋅⋅⋅N Hydrogen‐Bonded Complexes of Fluorophenylacetylenes: Frequency Shifts and Correlations

The C?H???N hydrogen‐bonded complexes of several fluorophenyacetylenes with ammonia and methylamine were characterized by a redshift in the acetylenic C?H stretching vibration of the phenylacetylene moiety. These redshifts were linearly correlated with the stabilization energies calculated at the CCSD(T)/CBS//MP2‐aug‐cc‐pVDZ level. Analysis of various components of the interaction energy indicated that the observed redshifts were weakly correlated with the electrostatic component. The weaker linear correlation between the frequency shifts and the electrostatic component between two data sets can perhaps be attributed to the marginal differences in the Stark tuning rate and zero‐field shifts. The induction and exchange‐repulsion components were linearly correlated. However, the dispersion component depends on the nature of the hydrogen‐bond acceptor and shows a quantum jump when the hydrogen‐bond acceptor is changed from ammonia to methylamine. The observed linear correlation between the redshifts in the C?H stretching frequencies and the total stabilization energies is due to mutual cancellation of deviations from linearity between various components.     

Columnar Stacking of Partially Fluorinated [4]Helicenes: C−H⋅⋅⋅F Interactions Change the Stacking Orientation

The partial fluorination of polycyclic aromatic hydrocarbons often produces a layered crystal packing, where fluorinated aromatic surfaces are stacked over nonfluorinated aromatic surfaces. Herein, we report the synthesis and crystal packing of partially fluorinated [4]helicenes with steric congestion resulting from H and F atoms in the fjord region. F₆‐[4]Helicene forms head‐to‐tail columnar stacks consisting of an alternate arrangement of perfluorinated and nonfluorinated naphthalene moieties. With decreasing fluorine content, aromatic stacking switched from arene?fluoroarene (Ar^H?Ar^F) hetero‐stacking to Ar^H?Ar^H/Ar^F?Ar^F homo‐stacking with the help of intermolecular C?H???F contacts in the fjord region. As a result, head‐to‐head columnar stacks appear. Therefore, the conventional Ar^H?Ar^F stacking motif is not always applicable to F_n‐[4]helicenes with twisted π‐surfaces.