Crystal structure and conformational analyses of a synthetic tetrapeptide t‐Boc‐L‐Val‐Aib‐Gly‐L‐Leu‐OMe

Crystal structure of a terminally blocked synthetic peptide, t‐Boc‐L‐Val‐Aib‐Gly‐L‐Leu‐OMe has been investigated. Two different conformers of peptide with one co‐crystallized water molecule, coexist in the crystal structure, in C2 space group. Both the conformers are stabilized by two intramolecular 1← 4 hydrogen bonds, between (Boc) C=O … HN (Gly) and (Val) C=O … HN (Leu), forming consecutive type II‐I' β‐turns. In the crystal, water interlinks peptide molecules, making a triangular bridge of pyramidal type. (© 2005 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Structural studies of crystalline oligosaccharides VI: Crystal structure and conformation of benzyl‐4,6‐O‐benzylidene‐3‐O‐benzoyl‐β‐D‐galactoside

Monsaccharides are the building blocks of polysaccharides and hence are the simplest sugar molecules to study the conformation and molecular structures of sugars. Benzyl‐4,6‐O‐benzylidene‐3‐O‐benzoyl‐β‐D‐galactoside is a key intermediate in the synthesis of polysaccharides. Crystal structural investigation of the title compound was undertaken to establish their chemical structure as well as to study their solid state conformation. Crystals of the title compound, obtained from water/methanol, are orthorhombic, space group P2₁2₁2₁, with cell dimensions a=11.290 (4), b=9.941 (1), c= 21.442(2)Å, V= 2406ų, Z=4, D_obs= 1.42 gm/cm³, D_calc=1.423 g/cm³, 2886 reflections were collected on a CAD‐4 diffractometer. The structure was solved by direct methods and refined to a final reliability index of 4.7%. The galactoside sugar has the chair conformation with C2' and C5' deviating from the mean plane of the other atoms of the sugar. The 4,6‐O‐benzylidene ring also has a chair conformation with the benzoyl group proximal to O6'. The crystal structure is stabilized by O‐H…O hydrogen bonds involving O2' as donor and three C‐H…O hydrogen bond interactions. (© 2006 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Growth and electrical characterization of L‐arginine added KDP and ADP single crystals

Potassium dihydrogen orthophosphate (KDP) and ammonium dihydrogen orthophosphate (ADP) single crystals added with L‐arginine have been grown by the solution methods. DC and AC electrical measurements were carried out at various temperatures along both a‐ and c‐ directions. Results indicate an increase of the electrical parameters with the increase of temperature which can be attributed mainly to the increase of thermally generated hydrogen bond vacancies (L. defects). Also, the present study indicates that L‐arginine addition leads to reduction of electrical parameters of KDP and ADP single crystals which can be attributed mainly to the decrease of L‐defects due to creation of additional hydrogen bonds by the impurity in random directions. (© 2008 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Hydrogen bonding of modified bases involving Watson‐Crick sites: Crystal structure and conformation of Benzyl 6‐aminopurine‐7‐carboxylate

Crystals of benzyl 6‐aminopurine‐7‐carboxylate (C₁₃H₁₁N₅O₂) are monoclinic, space group C2/c, Z = 8, with a = 25.448 (9), b = 6.052 (1), c = 16.975 (6)Å, β = 112.05 (5)°, M = 269.27, D_m= 1.49, D_x= 1.48 g/cm³. The structure was determined from three‐dimensional diffractometric data by the multisolution technique and refined to a final reliability factor of 0.068. The molecule is planar with an intramolecular hydrogen bond from one of the amino hydrogens, H_a(N6) to the keto oxygen O(10) of the acyl group. The molecules are hydrogen bonded across the center of inversion by a pair of intermolecular hydrogen bonds using the Watson‐Crick sites. (© 2006 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Crystal structure of 3‐(3‐nitrophenylhydrazonocarbonyl)‐(1H)‐1,2,4‐triazole

The title compound, C₁₀H₈N₆O₃, was synthesized by the reaction of 3‐(1H)‐1,2,4‐triazole hydrazine with 3‐nitrobenzaldehyde in ethanol. The single crystal structure has been determined by X‐ray analysis. The crystal belongs to monoclinic system, space group p2₁/c with cell constant, a = 8.0214(17) Å, b = 17.334(4) Å, c = 8.9070(18) Å, V= 1179.4(4) ų. An intramolecular N—H...O and N—H…N hydrogen bond are observed between the ‐NH group with O atom of the carbonyl group and the ‐NH group with N atom. (© 2006 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Growth and characterization of L‐lysine monohydrochloride dihydrate (L‐LMHCl) single crystal

A nonlinear optical crystal of L‐lysine monohydrochloride dihydrate (L‐LMHCl) was grown by slow evaporation solution growth technique using deionised water and mixed solvents of deionised water and ethanol. The functional groups and vibrational frequencies were identified using FTIR and FT‐RAMAN spectra analyses. Also, the presence of hydrogen and carbon atoms in the grown sample was confirmed using proton and carbon NMR spectra analyses. Using TG‐DTA analyses, the decomposition temperature was obtained. Transmittance of the grown crystals was analysed using UV‐visible spectrum. The mechanical strength of the grown crystals was found using Vicker's microhardness tester. (© 2006 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Crystallization and structural studies of n‐benzyloxycarbonyl‐L‐tyrosine‐L‐glycine‐ethyl ester (Z‐Tyr‐Gly‐OEt)

It is axiomatic that efficient crystal production reflects upon the quality of structure. An empirical relation for mass proportions of two solvents in crystallization of Z‐Tyr‐Gly‐OEt shows a linear relationship. The dipeptide crystallizes in orthorhombic space group P2₁2₁2_1, with cell parameters a = 5.0680(1) Å, b = 13.8650(1) Å and c = 28.2630(1) Å, Z = 4, D_calc= 1.339Mg/m³, μ=0.820mm^‐1, F₀₀₀=848, CuKα = 1.5418 Å. The structure was solved by direct methods and final R1 and wR2 are 0.444 and 0.1276, respectively. The structure analysis reveals the trans conformation of the peptide unit with ω = ‐178.2(5)°, implying only a slight deviation from planarity. The torsion angles at glycine [ϕ, ψ = ‐84.4(7)°, 179.9(5)°] are characteristic of left‐handed poly glycine II helices. A number of N‐H…O, O‐H…O and C‐H…O hydrogen bondings play a role in stabilizing the molecules within unit cell. (© 2004 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Crystal structure,thermal analysis and IR spectroscopy investigations of N,N‐dimethyl‐1,3‐propanediammonium monohydrogenmonophosphate trihydrate

A new organic monohydrogenmonophosphate (C₅H₁₆N₂)HPO₄.3H₂O (abbreviate as MPAP) is prepared by reacting H3PO4 with N, N‐dimethyl‐1,3‐propanediamine. This compound crystallizes in the orthorhombic crystal system, space group Pca2₁. Unit cell parameters are a % 8.1445(1) Å, b % 11.7734(2) Å, c % 12.9021(2) Å, with, Z % 4 and ρ_m % 1.31 g cm⁻³. The structure was solved, using the direct methods and refined against F² to a reliability R factor of 0.0257. Three types of hydrogen bonds participate to the structural cohesion: O(P)—H…O, O(W)—H…O and N—H…O. The first one connects HPO₄ groups in infinite chains. This organization of the phosphoric groups creates voids in which are located the water molecules which are themselves connected by the second type of hydrogen bonds to the adjacent phosphoric groups that lead to a typical layer organization of a polyanion [HPO₄.(H₂O)₃ ]²ⁿ⁻_n. The third hydrogen bond type is responsible for the cohesion between the two‐dimensional polyanions. Thus, a framework in a threedimensional way is then created. The thermal decomposition of MPAP shows a large endothermic effect corresponding to the elimination of the water molecules and a set of endotherms which are probably due to the evolution of ammonia from the structure and the decomposition. The title compound was also characterized by IR spectroscopy, the interpretation of the spectra is based on theoretical analyses and literature data. (© 2003 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Occurrence and consequences of differences in the cation/anion ratios during classical resolution: D‐/L‐serine benzyl ester 2,3‐toluyl‐D‐tartrate

Differences in physical‐chemical properties of diaste‐reomeric salts allow the separation into the respective salts and subsequently into enantiomers by crystallization. Within this study unusual deviations in the cation‐/anion‐ratio of a diastereomeric salt pair were observed and characterized. While the n‐salt (L‐serine benzyl ester 2,3‐toluyl‐D‐tartrate) crystallizes in a ratio of two cations and one anion, the p‐salt (D‐serine benzyl ester 2,3‐toluyl‐D‐tartrate) consists of only one cation and one anion. Consequently the classical definition of a diastereomeric salt pair does not apply. In this contribution all differences in relevant thermodynamic properties of the unusual resulting diastereomeric salt pair are presented and discussed.     

The Crystal Structures of O,O‐Dimethylalpinumisoflavone and 5‐O‐Methyl‐4'‐O‐(3‐methyl‐but‐2‐en‐1‐yl)alpinumisoflavone

The petrol extract of the rootbark of Milletia Thonningii obtained by column chromatography afforded sixteen different crystalline samples to be isolated. The crystal structures of two of these compounds, O,O‐Dimethylalpinumisoflavone (I) and 5‐O‐Methyl‐4'‐O‐(3‐methyl‐but‐2‐en‐1‐yl)alpinumisoflavone (II) are being reported here. (II) has two independent molecules in the asymmetric unit and differs from (I) in a longer side chain attached to C(15) of the phenyl ring. The structural features of the three molecules in the title compounds are reported and compared. The derivatives, being subject of this article are the first reported crystal structures where the isoflavone fragment is fused to a further six membered ring that results in a tricyclic ring system. The benzopyrone fragments are planar. The dihedral angles between the benzopyrone fragment and the phenyl ring being 55.38(6)° for (I) and 44.75(15)° /44.64(15)° for the respective independent molecules of (II) are within the range of values observed for similar structures.     

Time and temperature induced phase transformation in L‐isoleucine hydrochloride monohydrated crystal

Semi organic crystals have been intensively studied aiming applications in nonlinear optical (NLO). Such applicability requires crystals with both high quality and thermal stability, which make the full characterization of this material a topic issue. In this paper, single crystals of L‐isoleucine hydrochloride monohydrated (L‐Ile.H2O.HCl) was synthesized by slow evaporation technique and characterized by thermal analysis and X‐ray diffraction (XRD) measurements. XRD results at 298 K showed that the sample crystallize with the orthorhombic structure, and the lattice parameters obtained by Rietveld refinement were a = 5.873(3) Å, b = 24.814(4) Å, and c = 6.873(5) Å. Thermal analysis measurements shows four decomposition stages between 328 ‐480 K which were associated with loss of water by desolvation, loss crystallization water and decomposition of L‐Ile.HCl. XRD measurements as a function of temperature up to 428 K show an irreversible phase transformation. This transformation was obtained after 32 hours keeping the L‐Ile.HCl.H2O sample at 413 K. The analysis shows that phase transformation occurs due to water and chlorine losses without destroy the amino acid carbon chain and in the end of transformation only the precursor amino acid remains. L‐Ile.HCl.H2O present low thermal stability and the phase transformation is time and temperature dependent.     

Crystal structure of 4'‐O‐methylalpinumisoflavone at 90K

4′‐O‐Methylalpinumisoflavone crystals which hitherto had been difficult to crystallize for X‐ray diffraction analyses have been obtained from a demethylated product of O, O‐dimethylalpinumisoflavone. The structural and conformational features of the crystal measured at 90 K are reported and compared with previously reported work of O,O‐dimethylalpinumisoflavone and 5‐O‐methyl‐4′‐O‐(3‐methyl‐but‐2‐en‐1‐yl) alpinumisoflavone. Each of these compounds is characterized by a six membered ring that is further fused to a benzopyrone isoflavone moiety resulting in a tricyclic ring system. This six membered ring shows a half‐chair conformation in all the molecules studied, with the ring in the title compound showing the least Cremer‐Pople puckering amplitude Q and shorter inter and intramolecular contacts. (© 2006 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

The salt of l‐prolinium picrate

A crystalline salt of prolinium picrate, C₁₁H₁₂N₄O₉, has been prepared and characterized by X‐ray crystallography. The salt crystallizes in orthorhombic space group P2₁2₁2₁ with a = 6.325(1)Å, b = 9.269(1)Å, c = 24.379(4)Å, V = 1429.4(5)ų, Z = 4. In the title salt, the picrate and prolinium ion are held by different bifurcated hydrogen bonds of N‐H—O type, and stablized by bifurcated hydrogen bonds of CH—O type. There exists a competion between hydrogen bonds and π–π stacking in determining the title crystal. (© 2003 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Crystal and Molecular Structure of N‐methyl‐N‐3‐(sulfonato)propyl‐3‐[tris(trimethylsiloxanyl)3‐silyl]pyrrolinium Sulfobetaine Hydrate at Room Temperature and 163 K

2 (C₁₇H₄₁NO₆SSi₄) . H₂O. M_r=1017.88, triclinic, space group P‐1. The molecules are arranged in bilayers. The molecules in each bilayer are held together by electrostatic forces, i.e., O‐N⁺ contacts, and hydrogen bonds. The asymmetric unit consists of two partly disordered siloxane molecules and one water molecule. The structure of the bilayers is virtually the same at 163 K and room temperature, but the stacking of the bilayers is different. The Si‐O‐Si bond angles at low temperature are significiantly smaller than at room temperature.     

Presence of pseudo‐peptide bond in the crystal structure of n‐(t‐butoxycarbonyl)‐ε‐n′‐benzyloxycarbony‐l‐lysyl‐l‐isoleucine (boc‐lys(obzl)‐ile)

The dipeptide Boc‐Lys(OBzl)‐Ile crystallizes in monoclinic space group P2₁ with cell parameters a = 5.003(1), b = 19.199(3), c = 15.270(2)Å, β =93.42(1)°, V = 1464.1(3)ų, Z = 2, D_cal = 1.117 Mg/m³ at T = 293 K. The structure was solved by direct methods and refined by full‐matrix least‐squares procedure to a final R = 0.096 and wR = 0.101 using 1379 reflections. The peptide unit is in trans conformation and the molecule takes up an extended conformation. In the lysine side chain, delocalization of electrons and pseudo peptide bond formation is observed at the interaction site of benzyloxycarbonyl group. Both N‐H…O and main chain C‐H…O hydrogen bonds stabilize the molecules in the unit cell in a parallel β‐sheet fashion. (© 2004 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Photoacoustic studies on two new organic NLO materials: L‐threonine and L‐prolinium tartrate

Photoacoustic spectroscopy (PAS) is a non‐destructive testing (NDT) tool and used here for analyzing the physical properties such as thermal diffusivity, thermal diffusion length, thermal conductivity and thermal effusivity of L‐Threonine and L‐Prolinium tartrate. These two crystals belong to a group of recently developed NLO materials, in our laboratory. The single crystals of the two compounds were grown by using submerged seed solution growth method. Characterization of the crystals was made by using single crystal X‐ray diffraction. (© 2007 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Synthesis,crystal and molecular structure of trans‐bis(2‐pyridinepropanol)bis(saccharinato)nickel(II)

Trans‐bis(2‐pyridinepropanol)bis(saccharinato)nickel(II), [Ni(sac)₂(pypr)₂], where sac and pypr are the saccharinate anion and the 2‐pyridinepropanol molecule, respectively, crystallizes in the triclinic space group P (No. 2) with a = 8.1981(8), b = 9.9680(10), c = 10.4956(10) Å, α = 90.740(3)° β = 108.142(3)°, γ = 111.025(3)°, Z = 1, V = 1.537 ų. The structure of the nickel(II) complex consists of neutral molecules in which the nickel(II) ion sits on a center of symmetry and is octahedrally coordinated by two sac ligands, and two neutral pypr ligands. The pypr acts as a bidentate N‐ and O‐donor ligand forming a seven‐membered chelate ring, while sac behaves as a monodentate O‐donor ligand via the carbonyl O atom. The Ni‐N bond distance is 2.1016(15) Å, whereas the Ni‐O_pypr and Ni‐O_sac bond distances are 2.1280(12) and 2.0792(11) Å, respectively. The individual molecules are held together with a strong hydrogen bond between the hydroxyl O atom of pypr and N atom of sac and the C‐H…O type weak hydrogen bonds between some ring hydrogen atoms of pypr and sac, and the carbonyl and sulfonyl O atoms of sac in the neighbouring molecules. (© 2003 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Dielectric and microhardness studies on L‐citrulline and L‐ascorbic acid admixture TGS crystals

Single crystals of amino acid doped (L–citrulline, L‐ascorbic acid) triglycine sulphate were grown by slow evaporation technique. The lattice parameters and crystalline quality were confirmed by powder X‐ray diffraction studies. The presence of functional groups in the grown crystals was confirmed by Fourier transform infrared spectrum analysis. The dielectric studies were carried out to identify the phase transition temperature and the dielectric constant was found to be less for both the doped crystals than pure triglycine sulphate crystal. Micro hardness studies were carried out using Vickers pyramidal indentation technique at room temperature showed a decrease in hardness due to doping. (© 2008 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Crystal Structure of N,N'‐Bis(3‐(o‐dimethylaminoimino‐ethyl) ‐2‐hydroxy‐5‐methyl)‐benzylpiperazine

The structure of the synthesized title compound, C₃₀H₄₆N₆O₂ , was solved by using X‐ray diffraction techniques. The compound crystallized in monoclinic space group P2₁/n with cell dimensions a = 14.0629(7), b = 6.5696(3), c = 17.7948(8)Å, β = 111.35(2)°, V = 1531.2(1)ų, Z = 2, D_cal = 1.134 Mgm^‐3 and T = 293(2)K. The molecule possesses a center of symmetry, and hence, there is half a molecule in the asymmetric unit. The piperazine ring adopts chair conformation with the substituents at the equatorial position, subtending a dihedral angle of 88.87(1)° with the phenyl ring. The phenyloxy hydrogen is involved in an intramolecular O‐H...N type of hydrogen bond.     

Solution Growth and Characterisation of L‐alanine Single Crystals

Single crystals of L‐alanine have been grown from buffered aqueous solutions and characterised as to their optical quality via wavefront distortion analysis, electrooptical response and harmonic generation efficiency. Refraction indices as well as phase matching loci were found in satisfactory agreement with previously published data for crystals grown in non buffered solution. Estimates for the electro‐optical response are reported for the first time. The experimentally observed crystal habit is discussed in terms of morphological importance (M.I.), which was found to be in disagreement with the predictions of crystallographic criteria based on the interplanar distance d_hkl, on the periodic bond chains (PBC) and the attachment energy E_att. This disagreement is tentatively attributed to the presence of impurities and non‐appropriate supersaturation conditions.