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1.
Abstract— The phosphorescence of alcohol dehydrogenase from horse liver (LADH) can be observed at room temperature. The quenching of this long-lived light emission, which comes from a tryptophan residue well buried within the interior of the enzyme structure, was measured. The rate constants for the quenching by the small oxygen molecule and by the I -1ion were found to be 1.4 → 108 M -1 s-1 and 108 M -1 s-1, respectively, at room temperature. The temperature dependence of the quenching yields an activation energy of about 14 kcal/mol. This activation energy and the meaning of the accompanying large pre-exponential factor in the Arrhenius equation, A = 1018 M -l s-1, are discussed in terms of a model in which the quencher threads its way through the protein network.  相似文献   

2.
Abstract— N -bromosuccinimide at low molar ratios specifically oxidizes tryptophan residues in purple membranes (bR). Loss of 1 mol tryptophan per mol bR (which corresponds to oxidation of Trp10 or Trp12 or part of both) produces slight changes in the absorption and CD spectra and in the photobleaching kinetics. The efficiency of reconstituting the retinylidene protein after bleaching and heptane extraction of these membranes was comparable to control values(–80%). Photocycling yield (M412) with 265 nm or 530 nm excitation (15 ns pulse) was only slightly decreased. Another mol of tryptophan was reacted at higher NBS:bR molar ratio (10:1). Partial oxidation of several residues rather than titration of a specific residue occurred: HPLC indicated no reaction with the chromophore. A considerable loss of extinction at 570 nm including enhanced red and blue shifts of LDmax at low and high pH respectively, was observed. Also the photobleaching rate was faster and functional retinylidene membranes could not be reconstituted from heptane-extracted, apomembranes. Exogenous retinal could still locate the attachment site, based on formation of the fluorescent NaBH4-reduced retinoyl adduct. Perturbation in the near UV and visible CD infer changes in helical conformation, trimer dissociation and decreased asymmetry of the chromophore. Photocycling efficiency was greatly decreased. The relative decrease was greater for 265 nm rather than 530 nm excitation. These results are consistent with co-operative destabilization of the protein conformation by oxidized tryptophan residues, which leads to a decrease in the hydrophobicity of chromophoric site.  相似文献   

3.
The visual pigment rhodopsin is a seven-transmembrane (7-TM) G protein-coupled receptor (GPCR). Activation of rhodopsin involves two pH-dependent steps: proton uptake at a conserved cytoplasmic motif between TM helices 3 and 6, and disruption of a salt bridge between a protonated Schiff base (PSB) and its carboxylate counterion in the transmembrane core of the receptor. Formation of an artificial pigment with a retinal chromophore fluorinated at C14 decreases the intrinsic pKa of the PSB and thereby destabilizes this salt bridge. Using Fourier transform infrared difference and UV-visible spectroscopy, we characterized the pH-dependent equilibrium between the active photoproduct Meta II and its inactive precursor, Meta I, in the 14-fluoro (14-F) analogue pigment. The 14-F chromophore decreases the enthalpy change of the Meta I-to-Meta II transition and shifts the Meta I/Meta II equilibrium toward Meta II. Combining C14 fluorination with deletion of the retinal beta-ionone ring to form a 14-F acyclic artificial pigment uncouples disruption of the Schiff base salt bridge from transition to Meta II and in particular from the cytoplasmic proton uptake reaction, as confirmed by combining the 14-F acyclic chromophore with the E134Q mutant. The 14-F acyclic analogue formed a stable Meta I state with a deprotonated Schiff base and an at least partially protonated protein counterion. The combination of retinal modification and site-directed mutagenesis reveals that disruption of the protonated Schiff base salt bridge is the most important step thermodynamically in the transition from Meta I to Meta II. This finding is particularly important since deprotonation of the retinal PSB is known to precede the transition to the active state in rhodopsin activation and is consistent with models of agonist-dependent activation of other GPCRs.  相似文献   

4.
Abstract— The physical quenching of singlet molecular oxygen (1Δg) by amino acids and proteins in D2O solution has been measured by their inhibition of the rate of singlet oxygen oxidation of the bilirubin anion. Steady-state singlet oxygen concentrations are produced by irradiating the oxygenated solution with the 1–06 μm output of a Nd-YAG laser, which absorbs directly in the electronic transition 1Δg+ 1 v →3Σg-. The rate of quenching by most of the proteins studied is approximated by the sum of the quenching rates of their amino acids histidine, tryptophan and methionine, which implies that these amino acids in the protein structure are all about equally accessible to the singlet oxygen. The quenching constants differ from those obtained by the ruby-laser methylene-blue-photosensitized method of generating singlet oxygen, or from the results of steady-state methylene-blue-photosensitized oxidation, where singlet oxygen is assumed to be the main reactive species. The singlet oxygen quenching rates in D2O, pD 8, are (107ℒ mol-1 s-1): alanine 0–2, methionine 3, tryptophan 9, histidine 17, carbonic anhydrase 85, lysozyme 150, superoxide dismutase 260, aposuperoxide dismutase 250.  相似文献   

5.
Light-induced changes in the UV absorption spectrum of bovine rod outer segment membranes were measured by conventional difference spectroscopy and by flash photolysis methods. Different thermal intermediates of rhodopsin (lumirhodopsin, metarhodopsin I, metarhodopsin II, and meta-rhodopsin III) have absorption spectra in the ultraviolet which differ from the rhodopsin spectrum and from each other. The spectra associated with metarhodopsin I, metarhodopsin II, and metarhodopsin III are characteristic of perturbation of a small number of tyr. and/or trp residues, most likely one trp residue. These aromatic residues are in the neighborhood of the retinal Schiff base and undergo coordinated changes of interaction with retinal during the bleaching sequence. At the metarhodopsin II stage, the magnitude of the UV spectral changes is consistent with the exposure of a previously shielded trp residue to an aqueous environment. The present results are consistent with previous spectral studies which limit the extent of light-induced conformational changes to regions of the protein in the neighborhood of the retinal Schiff base. An analogous study was made on light-adapted purple membranes of Halobacterium halobium. The UV absorption spectrum associated with the deprotonated Schiff base intermediate of the trans-bacteriorhodopsin cycle is indicative, in part, of aromatic residue perturbation. However, significant changes in the secondary and tertiary structures of the bacterio-rhodopsin protein characteristic of a delocalized conformational change are unlikely at this intermediate stage.  相似文献   

6.
We measured the linear dichroism of several metalloporphyrins embedded in stretched polyvinyl alcohol (PVA) films to estimate the orientation of the absorption transition moments, which in hemoproteins are relevant to the radiationless energy transfer between tryptophan and heme. The metalloporphyrins were derivatives of protoporphyrin IX (PPIX), namely Fe3+-PPIX (ferric-heme) and Fe2+CO-PPIX (CO-heme), Mg-PPIX (Mg-heme) and Zn-PPIX (Zn-heme). Measurements were conducted between 300 and 700 nm. In all cases the linear dichroism was wavelength dependent, indicating the presence of several transition moments with different orientations. We focused our attention on the near-UV (300–380 nm) and Soret (380450 nm) absorption bands. Deconvolution in terms of Gaussian components gave three components between 380 and 450 nm and only one in the 300–380 nm region. Deconvolution of the near-UV and Soret spectra of oxy-, deoxy- and carbonmonoxyhemoglobin gave very similar results, suggesting a very similar orientation of the various transition moments in the free and protein-embedded hemes. It should be stressed that the single 300–380 nm band is the only one responsible for the overlap integral that regulates the energy transfer from tryptophan to heme in hemoproteins (Gryczynski et al., Biophys. J . 63, 648–653, 1992). The dichroism of this single band indicated that its transition moment is oriented at about 60 from the α-γ meso-axis of the heme moiety. We conclude that the heme should be considered a linear oscillator when it acts as acceptor of energy transfer from tryptophans.  相似文献   

7.
The functional transitions of the membrane-bound chloroplast ATPase (CF1) as influenced by low ADP and uncoupler concentrations are investigated by measurements of initial and steady-state ATP hyrolysis and concomitant membrane energization. Following activation of latent ATP hydrolysis by light in the presence of dithioerythritol, the resulting steady-state ATP hydrolysis depends on the dark-period ( t d) bteween light activation and ATP addition. ADP, added during t d, inhibits this activity ( K i about 2 μ M ) and induces a lag in the onset of ATP hydrolysis. The extent of membrane energization as monitored by an aminoacridine fluorescent probe is proportional to the ATPase activity.
An uncoupler amplifies the inhibitory effect of ADP if added during f d, whereas it induces the normal stimulation of ATP hydrolysis in the absence of ADP. The ADP effect, which is different from product inhibition, is interpreted as a conformational interaction with CF1 causing an increase of the energy threshold required for the inactive → active transition of the CF1 molecules. These results are in harmony with currently proposed models of CF1 regulation by adenine nucleotides based on binding studies.
The inactive → active transition of CF1 conformation is investigated by analysis of the lag in the onset of ATP hydrolysis at different ADP concentrations and by means of varied light pulses and single-turnover flashes, using the electric potential indicating absorption change at 515 nm as a probe for the onset of ATP hydrolysis. The half-time of the process leading to fully (re)activated ATP hydrolysis is about 0.25 s. The ATP-dependent flash-induced inactive → active transition occurs within a few turnovers of electron flow.  相似文献   

8.
Abstract The polarized UV-absorption spectra of all- trans retinal and both crystal forms of 11- cis , 12-s- cis retinal (presented in the previous paper, Part I) are analyzed using Lowry-Hudson functions to describe the band profiles. The polarization ratios of the polarized bands is used to determine the direction of the corresponding transition moments. For all- trans retinal the polarization spectra show that the absorption between 23 and 36 X 103 cm−1 is caused by three overlapping bands labeled S, A and B. For 11- cis retinal the B-band is also clearly resolved whereas the S and A bands are separated with much less certainty than for all- trans retinal.
Comparing these bands with the excited state manifold resulting from semiempirical CI-calculations including double excitations, the S-band could be assigned to the 1Ag1Ag-* and the A-band to the 1Ag1Bu+* transition. However, no transition is found in this manifold which could positively be assigned to the B-band because the transitions predicted in this spectral region have negligible oscillator strengths. In all the crystal spectra a further band C is observed around 39 X 103 cm−1 which is particularly pronounced in the case of 11- cis retinal. For this band an assignment to the 1Ag1Ag+*-transition is proposed.  相似文献   

9.
Abstract— We study the effect of solvent viscosity on the kinetics of the photocycle of bacteriorhodopsin (bR) from Halobacterium halobium. Solvent viscosity is altered by changing the glycerol concentration from 20 to 80% glycerol by volume. The kinetics of the photocycle are observed after flash photolysis at four wavelengths at several temperatures between 240 and 315 K. Assuming a sequential model, bR → K -→ L → M → O → bR, Arrhenius plots of the rate coefficients determine the activation enthalpies and frequency factors for each step. Kinetic data from all solvents are considered together and studied as a function of temperature for fixed solvent viscosities. The early steps of the cycle are insensitive to solvent viscosity, →; the later steps are retarded with increasing viscosity. Activation enthalpies are independent of viscosity; the frequency factors are proportional to η−K, where the exponent k 0.25 for the transition K → L, 0.0 for L → M, 0.8 for M → O and 0.5 for O → bR.  相似文献   

10.
Abstract— Besides the normal tryptophan (Trp) fluorescence in aqueous solution (emission maximum at 350 nm), a new emission, peaking around 380 nm, appears by long wavelength excitation. Its fluorescence yield (φs 0.24) is higher than that of tryptophan (φTrp= 0.13). The growth of this emission is observed under different experimental conditions, mainly under UV anaerobic irradiation. To explain this observation, the formation of a C3-hydroxylated derivative is tentatively suggested.  相似文献   

11.
Abstract— Using high-intensity actinic light, the chlorophyll a fluorescence transient from HCO-3-depleted chloroplasts shows a rapid initial rise (O → I) followed by a slow phase (I → P). In the presence of HCO-3, the O → I rise is delayed but the I → P phase is much more rapid. Using low-intensity actinic light, the chlorophyll a fluorescence transient from 3-(3,4-dichlorophenyl)-1,1 dimethylurea (DCMU)-treated chloroplasts is delayed in the presence of HCO-3. Bicarbonate increases the amount of delayed light emission from chloroplasts given 10 s illumination with weak blue light (0·4 W/m2). DCMU greatly increases the amount of delayed light seen in the presence of HCO-3 under these conditions but decreases the amount seen in the absence of HCO-3. It is suggested that HCO-3 may somehow form or stabilize, in the dark, a number of reaction centers corresponding to the S1 state in the model of B. Forbush, B. Kok and M. McGloin ( Photochem. Photobiol. 14, 307–321, 1971).  相似文献   

12.
Abstract— The back photoreaction from the M(412nm) intermediate in the photocycle of light-adapted bacteriorhodopsin, BRLA(570 nm), is studied using pulsed laser excitation. The decay of a primarily produced species, MP, regenerates BRLA(570nm) in a process characterized by a half life of 200 ns at 25°C. The absorption maximum of MP is blue shifted (Λmax≃ 395 nm) relative to that of M(412nm). The primary photochemical step, M(412nm) → MP, is attributed to a conformational change in the polyene residue. The energy and entropy of activation of the subsequent MP→ BRLA (570 nm) relaxation are reported and discussed.  相似文献   

13.
Abstract— The second derivative spectra of tryptophan in water and in ethylene glycol at 22°C have been integrated in order to obtain the corresponding primitive functions. The integration was carried out by making use of Tchebychev polynomials. The results show that the integrated primitive functions do not correspond to the original absorption spectra of tryptophan in various solvents, but they reflect only the contributions of the 1Lb bands of the indolic chromophore. The identification of the electronic component, which generates the second derivative spectrum, was based on the solvent insensitivity of the derivative peaks. The comparison between the absorption spectra reported in this paper and those calculated for the 1Lb1A electronic transition of indole confirmed the assumption that the derivation process eliminates the broad, although more intense, contributions coming from the 1La1A electronic transition.  相似文献   

14.
Abstract— The possibility of 1O2 (1Δg) participation in the oxidation of polyphenols and quinones has been investigated in two systems: (1) the system involving autooxidation leading to oxidative polymerization and destruction, and (2) the modified Trautz-Schorigin reaction, i.e. oxidation of polyphenols and HCHO with H2O2 in concentrated alkaline solutions. The red band with maximum at 635 nm observed in chemiluminescence of pyrocatechol, adrenaline, pyrogallol, gallic acid, adrenochrome and p -benzoquinone corresponds to the transition 2O2(1Δg) → 2O2(3Σ-g). Emission bands in the range 475–540 nm arise from the superposition of the 2O2(1Δg) → 2O2(3Σ-g) transition and radiative deactivation of excited oxidation products. In system (2) chemiluminescence has a broad band from 580 nm beyond 800 nm and much higher intensity than in system (1). Formaldehyde was found to enhance light emission in system (1) by a factor of about 30. The influence of solvents, including D2O in which 1O2 has varying lifetimes, on kinetics of chemiluminescence as well as quenching effect of β-carotene, hydroquinone, cysteine, bilirubin and biliverdin strongly support the involvement of 1O2 in the chemiluminescence of both systems.  相似文献   

15.
The activation of rhodopsin has been the focus of researchers over the past decades, revealing many aspects of the activation pathways of this prototypical G protein-coupled receptor on a molecular level, starting with the light-dependent isomerization of its retinal chromophore from 11-cis to all-trans and leading eventually to the large scale helix movements in the transition to the active receptor state, Meta II. Comparatively little is known, however, on the deactivation pathways of the light receptor, which represent essential steps in maintaining a functional photoreceptor cell. Rhodopsin's active receptor species, Meta II, decays by two fundamentally different pathways, either forming the apoprotein opsin by release of the activating all-trans retinal ligand from its binding pocket, or by a thermal isomerization of this ligand to a less activating species in the transition to metarhodopsin III (Meta III). Both decay products, opsin and Meta III, are largely inactive under physiological conditions, yet they do not restore the complete inactivity of the dark state. Although some properties of Meta III have been described already in the 1960s, its molecular nature and the pathways of its formation have remained rather obscure. In this review, we focus on recent studies from our laboratories, which have provided a major progress in our understanding of the Meta III deactivation pathway and its potential physiological roles. Using Fourier-transform infrared (FTIR) difference spectroscopy in combination with a variety of other spectroscopic and biochemical techniques and quantum chemical calculations, we have developed a general picture of the interplay between the retinal ligand and the receptor protein, which is compared to similar reaction mechanisms in invertebrate photoreceptors and microbial retinal proteins.  相似文献   

16.
Abstract— The lowest-lying allowed UV transition in p -aminobenzoic acid (PABA) is assigned Γ→1La based on quantitative absorption and fluorescence studies, as well as semiempirical PM3 multielec-tron configuration interaction calculations. The oscillator strengths, fluorescence quantum efficiencies and lifetimes are reported for PABA in several polar, nonpolar, protic and aprotic solvents (aerated) at 296 K. Reasonable agreement is found between the observed radiative rate constant and that calculated from the absorption and fluorescence spectra. Shifts in the absorption and fluorescence spectra in aprotic solvents are analyzed in terms of the Onsager reaction field model; results are consistent with an increase in dipole moment of ca 4 D between the relaxed S0 and S1, states. No evidence is found for the emission from the amino-twisted form of PABA in all solvents studied although calculations show that the amino-twisted S, state is highly polar, but higher in energy by ca 35 kJ/mol ( in vacuo ). The fluorescence efficiency is excitation wavelength independent in both methylcyclohexane and water. The temperature dependence of the nonradiative rate constant (from S1) was studied in several solvents. Nonradiative decay may be due to intersystem crossing, which would be fast enough to compete with thermally activated intramolecular NH2 twisting. The phosphorescence spectrum and lifetime obtained in an EPA glass at 77 K are reported, and the triplet energy of PABA is estimated.  相似文献   

17.
Abstract— The absorption and emission spectra of quinizarin (1,4-dihydroxy-anthraquinone) have been investigated in hydrocarbon and alcoholic solvents. Fluorescence spectra in 3 different Shpolskii matrices were recorded at 14 K. Vibrational analyses of these spectra revealed the presence of 3, 8, and 9 sites in octane, heptane, and hexane matrices, respectively. The fluorescence lifetime was found to be 6.5 ns in hexane and EPA. Fluorescence photoselection measurements in EPA (77 K) showed that the first 4 electronic transitions of quinizarin are polarized parallel, parallel, perpendicular, and parallel to the long molecular axis and can be assigned, in order of increasing energy, to 1B2, 1B2, 1A1 and 1B2 (ππ*)→1A1(C2v,) transitions, respectively. The fluorescent transition is assigned as 1B1 (ππ*)→1A1. The absence of phosphorescence is attributed to the intramolecular hydrogen bonding present which displaces the parent anthraquinone n →* states above the ππ* states, thereby rendering the intersystem crossing (S1-T1) radiationless pathway inefficient.
Photoselection measurements on daunorubicin, a substituted quinizarin and known anticancer drug, revealed an absorption band polarization pattern identical to that of quinizarin. These results are in part at variance with assumptions used in previous work on the intercalation specificity of daunorubicin with DNA.  相似文献   

18.
Abstract— The picosecond fluorescence kinetics of tryptophan residues in bacteriorhodopsin and some perturbed analogs are measured to study the different tryptophan environments and their changes upon metal cation removal, retinal removal, and M412 trapping. In bacteriorhodopsin, the emission shows four decay components designated Or, C2r, C3r, and C4r in order of increasing lifetimes. The emission wavelength of C3r and C4r is near that found in aqueous solution, while that of C1r is the shortest. The removal of retinal triples the total emission intensity and reduces the number of components to two, suggesting that the observed variation of the lifetimes in bacteriorhodopsin results from the variation of the energy transfer efficiency between different tryptophans and retinal. We conclude that the Or and C2r emission is from the closest tryptophans to the retinal. The quenching of the C3r emission by all metal cations, including those that cannot act as energy acceptors, e.g. Ca2+, is attributed to protein conformation changes caused by metal cation binding which leads to a stronger energy transfer coupling between tryptophans and retinal. The additional quenching of the C2r emission in Eu3+bound bacterioopsin is proposed to result from direct energy transfer between tryptophans and Eu3+.  相似文献   

19.
Recent studies of the activation mechanism of rhodopsin involving Fourier-transform infrared spectroscopy and a combination of chromophore modifications and site-directed mutagenesis reveal an allosteric coupling between two protonation switches. In particular, the ring and the 9-methyl group of the all-trans retinal chromophore serve to couple two proton-dependent activation steps: proton uptake by a cytoplasmic network between transmembrane (TM) helices 3 and 6 around the conserved ERY (Glu-Arg-Tyr) motif and disruption of a salt bridge between the retinal protonated Schiff base (PSB) and a protein counterion in the TM core of the receptor. Retinal analogs lacking the ring or 9-methyl group are only partial agonists--the conformational equilibrium between inactive Meta I and active Meta II photoproduct states is shifted to Meta I. An artificial pigment was engineered, in which the ring of retinal was removed and the PSB salt bridge was weakened by fluorination of C14 of the retinal polyene. These modifications abolished allosteric coupling of the proton switches and resulted in a stabilized Meta I state with a deprotonated Schiff base (Meta I(SB)). This state had a partial Meta II-like conformation due to disruption of the PSB salt bridge, but still lacked the cytoplasmic proton uptake reaction characteristic of the final transition to Meta II. As activation of native rhodopsin is known to involve deprotonation of the retinal Schiff base prior to formation of Meta II, this Meta I(SB) state may serve as a model for the structural characterization of a key transient species in the activation pathway of a prototypical G protein-coupled receptor.  相似文献   

20.
Abstract Crystals of all- trans retinal and both different forms of 11- cis , 12-s- cis retinal were grown on quartz slides with faces (101), (001) and (101), respectively, forming thin platelets of less than 0.2 μm thickness. Polarized UV absorption spectra at room temperature were measured in the range from 20 to 43 × 103 cm−1 with a microscope-spectrophotometer. In this spectral range three diffuse absorption bands were observed for all crystal types at similar wave numbers. A main absorption band was found at 25–28 × 103 cm−1, and two further bands at 32–34 and 38–40 × 103 cm−1. In case of all- trans retinal the latter band is by far the weakest in this spectral range. Additionally, the crystal spectrum of all- trans retinal shows a shoulder at the low wavenumber side of the main band which cannot be resolved in the corresponding solution spectrum. In the crystal spectra of 11- cis , 12-s- cis retinal, however, only a strong dissymmetry is observed at this side of the main band.  相似文献   

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