Highly efficient synthesis of linear pyrrole oligomers by twofold Heck reactions

The twofold Heck reaction of the vinylpyrroles 3a and 3b with the iodobenzenes 4a-c led to the linear pyrrole oligomers 5, 6, and 7. The synthesis of both symmetrical and unsymmetrical oligomers, such as 10a and 10b, was also accomplished by a Heck reaction of 8 and 9 and by a Heck reaction of 3a and 11 followed by a Wittig reaction and a second Heck reaction with 8. The pentacyclic oligomers 14 and 19 were prepared by a twofold Heck reaction of 13 with 4 and by a twofold Heck reaction of 15 with 16 followed by a Wittig reaction and a twofold Heck reaction with 8.     

Zur reaktionvon cyclotri- und cyclotri- und cyclotetrasilazanen mit silylfluoriden

Fluorosilyl substituted cyclosilazanes are formed by treating lithium salts of hexamethylcyclotri- and octa-methylcyclotetrasilazanes with silicon tetrafluoride and organo-substituted silicon fluorides. Disubstituted compounds are obtained by the reaction of dilithium hexamethylcyclotrisilazane with silicon fluorides or by the reaction of lithium hexamethylcyclotrisilazane with silicon fluorides at higher temperature. Cyclosilazanes with bulky ligands react with butyllithium with elimination of butane as a first step and then react further with a silicon fluoride compound, with LiF-elimination, to give a mixed substituted cyclosilazane. Ring coupling through a silicon bridge is achieved by the reaction of a fluorosilyl-substituted cyclotrisilazane with lithium hexamethylcyclotrisilazane. The mass,¹H and¹⁹F NMR spectra of the compounds are reported.     

Iptycene quinones: synthesis and structure

A practical and efficient method to synthesize iptycene quinones has been developed. As a result, a series of pentiptycene quinones 8-16 were conveniently synthesized by one-pot reaction of triptycene quinone 4 or 5 with anthracene 1 or its derivatives 2-3 in refluxing acetic acid in the presence of p-chloranil, followed by CAN oxidative demethylation. Similarly, a series of heptiptycene quinones 17-23 with U-shaped cavities were achieved with pentiptycene quinone 10 and triptycene diquinone 6 as precursors. Non-iptycene triquinones 24 with one tweezer-shaped cavity and 25 with two U-shaped cavities were synthesized by one-pot reactions of anthracene with pentiptycene triquinones 16a and 16b, respectively. Non-iptycene triquinone 26 with a dendritic structure was conveniently obtained by the reaction of anthracene with either pentiptycene diquinone 12 or triptycene triquinone 7. The structures of regioisomers 16a and 16b were determined by the single-crystal structure analysis of 16b. The structures of other regioisomers, including heptiptycene tetraquinones 19a/19b/19c and heptiptycene triquinones 23a/23b, were identified by comparative reactions.     

Models for Oscillating Polymerization: Activation by Product in a System with Flow

In this work, four polymerization mechanisms with flow are proposed where sustained oscillation can be present: (1) Polyaddition initiated by radicals produced by initiator decomposition, which is catalyzed by the polymer, first‐order termination, a polymer disappears by a reaction with a third substance and by leaving the system in the exit flow. (2) Polycondensation where the polymer has catalytic activity upon H to produce a monomer, first‐order termination and a monomer disappears by a reaction with a third substance, and there is exit flow for all the species. (3) Polycondensation with catalytic activity of the polymer upon A to produce a monomer, first‐order termination, conformational transitions of the polymers, one of the polymer conformations disappears by a reaction with a monomer and exit flow for all the species. (4) Polycondensation combined with polyaddition where the polycondensation polymer product has catalytic activity on the monomer, first‐order termination and exit flow of all the species.     

Polybutadiene Modification: Reactions of Halogen-Containing Polybutadienes with Organolithium Compounds

Polybutadiene (PB) can be easily halogenated by reaction with iodine chloride or bromine in tetrahydrofuran. The resulting glassy polymers were reacted with n-butyllithium, sec-butyl-lithium, and polystyryllithium in THF. Iodochlorinated PB gave a polybutadiene with a different cis/trans ratio with n-BuLi. The reformation of PB was accompanied by partial crosslinking. The reaction probably involved a halogen-metal exchange followed by intra- and intermolecular elimination of Li halide. With brominated PB, both coupling and elimination took place. With sec-BuLi, an allylic iodine derivative was obtained from iodochlorinated PB, probably by dehydrochlorination. The iodinated intermediate can easily undergo a coupling reaction with further sec-BuLi. Both iodochlorinated and brominated polybutadienes gave graft copolymers by reaction with polystyryllithium in THF. Grafting was always accompanied by gel formation.     

Role of binding entropy in the refinement of protein-ligand docking predictions: analysis based on the use of 11 scoring functions

We present results of testing the ability of eleven popular scoring functions to predict native docked positions using a recently developed method (Ruvinsky and Kozintsev, J Comput Chem 2005, 26, 1089) for estimation the entropy contributions of relative motions to protein-ligand binding affinity. The method is based on the integration of the configurational integral over clusters obtained from multiple docked positions. We use a test set of 100 PDB protein-ligand complexes and ensembles of 101 docked positions generated by (Wang et al. J Med Chem 2003, 46, 2287) for each ligand in the test set. To test the suggested method we compared the averaged root-mean square deviations (RMSD) of the top-scored ligand docked positions, accounting and not accounting for entropy contributions, relative to the experimentally determined positions. We demonstrate that the method increases docking accuracy by 10-21% when used in conjunction with the AutoDock scoring function, by 2-25% with G-Score, by 7-41% with D-Score, by 0-8% with LigScore, by 1-6% with PLP, by 0-12% with LUDI, by 2-8% with F-Score, by 7-29% with ChemScore, by 0-9% with X-Score, by 2-19% with PMF, and by 1-7% with DrugScore. We also compared the performance of the suggested method with the method based on ranking by cluster occupancy only. We analyze how the choice of a clustering-RMSD and a low bound of dense clusters impacts on docking accuracy of the scoring methods. We derive optimal intervals of the clustering-RMSD for 11 scoring functions.     

Simulation-aided design and synthesis of hierarchically porous membranes

Free-standing silica membranes with hierarchical porosity (ca. 300 nm macropores surrounded by 6-8 nm mesopores) and controllable mesopore architecture were prepared by a dual-templating method, with the structural design aided by mesoscale simulation. To create a two-dimensional, hexagonal macropore array, polymeric colloidal hemisphere arrays were synthesized by a two-step annealing process starting with non-close-packed polystyrene sphere arrays on silicon coated with a sacrificial alumina layer. A silica precursor containing a poly(ethylene) oxide-poly(propylene oxide)-poly(ethylene) oxide (PEO-PPO-PEO) triblock-copolymer surfactant as template for mesopore creation was spin-coated onto the support and aged and then converted into the free-standing membranes by dissolving both templates and the alumina layer. To test the hypothesis that the mesopore architecture may be influenced by confinement of the surfactant-containing precursor solution in the colloidal array and by its interactions with the polymeric colloids, the system was studied theoretically by dissipative particle dynamics (DPD) simulations and experimentally by examining the pore structures of silica membranes via electron microscopy. The DPD simulations demonstrated that, while only tilted columnar structure can be formed through tuning the interaction with the substrate, perfect alignment of 2D hexagonal micelles perpendicular to the plane of the membrane is achievable by confinement between parallel walls that interact preferentially with the hydrophilic components (PEO blocks, silicate, and solvent). The simulations predicted that this alignment could be maintained across a span of up to 10 columns of micelles, the same length scale defined by the colloidal array. In the actual membranes, we manipulated the mesopore alignment by tuning the solvent polarity relative to the polar surface characteristics of the colloidal hemispheres. With methanol as a solvent, columnar mesopores parallel to the substrate were observed; with a methanol-water mixed solvent, individual spherical mesopores were present; and with water as the only solvent, twisted columnar structures were seen.     

Micropatterning of copper on a poly(ethylene terephthalate) substrate modified with a self-assembled monolayer

We have developed a technique for the site-selective electroless deposition of Cu on poly(ethylene terephthalate) (PET) substrate modified with an organic self-assembled monolayer (SAM). The PET substrate was first modified with a silica-like layer by being dip-coated in an acetone solution of 3-aminopropyltrimethoxysilane and treated with UV light. The PET substrate was further modified with thiol groups using a 3-mercaptopropyltrimethoxysilane-SAM and then irradiated by UV light through a photomask to prepare thiol-group regions and OH-group regions. Cu was then deposited on only the thiol-group regions of the substrate by electroless deposition in a neutral solution with no catalysts by using dimethylamineborane as a reducing reagent. This site-selective deposition process can control the deposition conditions by an organic thin film fabricated on a surface-modified PET substrate, and thus can be applied to other low heat-resistant substrates.     

Structure formation of liquid-crystalline isotropic AB block copolymers in nematic solvents

AB block copolymers with an isotropic and a nematic block are synthesized by living anionic copolymerization of isotropic and mesogenic methacrylates. The complete phase diagrams of the corresponding homopolymers with the nematic solvent have been established. In dilute solution (0.2 to 5% by weight) in a low-molar-mass nematic solvent, the copolymers exhibit two different types of structure formation. Polymers with high isotropic block fraction form irreversible networks as a results of phase separation followed by vitrification of the polymer-rich phase. Polymers with high nematic block fraction on the other hand form thermoreversible threadlike structures perfectly ordered parallel to the director of the nematic solvent. These structures cannot be explained by a macroscopic phase separation process but more likely by a formation of micellar-like aggregates.     

Gold(I)-catalyzed intramolecular [4+2] cycloadditions of arylalkynes or 1,3-enynes with alkenes: scope and mechanism

The cyclizations of enynes substituted at the alkyne gives products of formal [4+2] cyclization with Au(I) catalysts. 1,8-Dien-3-ynes cyclize by a 5-exo-dig pathway to form hydrindanes. 1,6-Enynes with an aryl ring at the alkyne give 2,3,9,9a-tetrahydro-1H-cyclopenta[b]naphthalenes by a 5-exo-dig cyclization followed by a Friedel-Crafts-type ring expansion. A 6-endo-dig cyclization is also observed in some cases as a minor process, although in a few cases, this is the major cyclization pathway. In addition to cationic gold complexes bearing bulky biphenyl phosphines, a gold complex with tris(2,6-di-tert-butylphenyl)phosphite is exceptionally reactive as a catalyst for this reaction. This cyclization can also be carried out very efficiently with heating under microwave irradiation. DFT calculations support a stepwise mechanism for the cycloaddition by the initial formation of an anti-cyclopropyl gold(I)-carbene, followed by its opening to form a carbocation stabilized by a pi interaction with the aryl ring, which undergoes a Friedel-Crafts-type reaction.     

Potentiometric titrations of selenium with a fluoride-selective electrode

Selenite can be determined with a fluoride-selective electrode by two methods: a direct procedure based on the joint titration of selenite and standard fluoride with lanthanum and an indirect method based on precipitation of selenite with excess of lanthanum followed by back-titration with fluoride. In the first case the end-point is located by the second derivative method, and in the second case by means of a Gran plot. Direct titrations are suitable for selenite concentrations above 5 mM; indirect titrations are useful for concentrations as low as 0.5 mM.     

On the shape of a hydrostatic meniscus attached to a corrugated plate or wavy cylinder

The shape of a hydrostatic meniscus attached at a fixed contact angle to a vertical plate or circular cylinder with periodic corrugations is studied by analytical and numerical methods, and the effect of wall irregularities on the shape of the contact line and vertical component of the capillary force is discussed. An asymptotic analysis for a plate with small-amplitude sinusoidal corrugations is carried out to first order with respect to the corrugation amplitude, and a boundary-value problem is formulated and solved by a shooting method to determine the meniscus shape and elevation of the contact line. The meniscus attached to a corrugated plate with rounded corners produced by a Schwarz-Christoffel mapping function for a triangular wave is considered by numerical methods. The Laplace-Young equation determining the meniscus shape is solved in orthogonal curvilinear coordinates generated by conformal mapping using a finite-difference method. The numerical results are successfully compared with the predictions of the perturbation expansion for small amplitudes and discussed with reference to the rise of a meniscus inside a dihedral angle for large amplitudes. A companion asymptotic analysis is presented for a meniscus outside a vertical circular cylinder with small-amplitude sinusoidal corrugations. The analytical predictions are successfully compared with numerical solutions of the Laplace-Young equation for a meniscus outside an elliptical cylinder with aspect ratio near unity, regarded as a deformed circle.     

Conversion of a metastable superhydrophobic surface to an ultraphobic surface

Superhydrophobic surfaces in Wenzel and metastable wetting state were prepared and the conversion of such surfaces to ultraphobic surfaces was reported by the application of a fine-scale roughness. Silicon nitride substrates with hexagonally arranged pillars were prepared by micromachining. The two-scale roughness was achieved by coating these substrates with 60 nm silica nanoparticles. The surface was made hydrophobic by silanization with octadecytrichlorosilane (OTS). Wettability studies of the silicon nitride flat surface, silicon nitride pillars, and the surfaces with two-scale roughness showed that a two-scale roughness can effectively improve the hydrophobicity of surfaces with a higher apparent contact angle and reduced contact angle hysteresis when the original rough surface was in a metastable or Wenzel state. This study shows the pathway of converting a metastable hydrophobic surface to an ultraphobic surface by the introduction of a fine-scale roughness, which adds to the literature a new aspect of fine-scale roughness effect.     

Synthesis of polyaspartate macromonomer having a vinyl end group and application to dispersion copolymerization of styrene

Sodium polyaspartate (PAspNa) macromonomer with an acryloyl end group was synthesized for dispersion polymerization. At first, a poly(succinimide) (PSI) derivative with a hydroxyphthalimide end group was synthesized by polycondensation of l-aspartic acid and 4-hydroxyphthalic acid. Then, the PSI derivative was end-capped with an acryloyl group by a reaction with acrlyloyl chloride. Finally, a PAspNa derivative with a vinyl end group was synthesized by a hydrolysis of succinimide units by sodium hydroxide. The synthesized macromonomer was applied as a polymerizable stabilizer in dispersion copolymerization of styrene in a mixture of ethanol and water. The PAspNa macromonomer acted as an effective stabilizer and gave sub-micron-sized polymeric particles in dispersion polymerization in polar medium.     

Chemical modification of the surface of a sulfonated membrane by formation of a sulfonamide bond

This paper describes a novel approach for the surface modification of a cation-exchange membrane, bearing sulfonate groups, by a cationic layer. The modification procedure involved the chlorosulfonation of the sulfonate groups of the base membrane with thionyl chloride, followed by a reaction with a diamine to yield a sulfonamide bond and a terminal amine. The latter could be quaternized by reaction with methyl iodide or protonated by soaking in acidic media. The membranes were characterized in detail by attenuated total reflectance Fourier transform infrared and X-ray photoelectron spectroscopies as well as elemental analysis to confirm that the above reactions occurred. The selectivity of these membranes toward the electrochemically assisted transport of protons versus Zn2+ metallic cations was determined during an electrodialysis in a two-compartment electrochemical cell. The data indicate a significant decrease of the transport of the metallic cations following modification of the membrane with the cationic layer. The later allows for the transport of protons from the catholyte to the anolyte compartment with much improved selectivity since the divalent cations are excluded from the membrane due to the electrostatic barrier of the cationic layer.     

Tripodal borate ligands from tris(dimethylamino)borane: the first synthesis of a chiral tris(methimazolyl)borate ligand, and the crystal structure of a single diastereomer pseudo-C3-symmetric Ru(II) complex

The activation of tris(dimethylamino)borane towards reaction with a chiral methimazole by N-methylimidazole has been used to prepare the first example of a chiral tris(methimazolyl)borate ligand. Coordination of this neutral ligand to Ru(II) has been achieved by reaction with [(p-cymene)RuCl(2)](2) to provide a single diastereomer complex in which the chirality of the methimazolyl substituents dictate the chirality of the bicyclo[3.3.3]cage formed by the ligand on coordination to the metal. The alternative approach to chiral tris(methimazolyl)borate ligands involving the introduction of a chiral group onto the boron atom has been explored by replacing N-methylimidazole in the above reaction by chiral oxazolines as activating bases in reaction with simple methimazole. However, although the B(NMe(2))(3) is activated to reaction with methimazole by these oxazolines, an intramolecular oxazoline ring-opening by a coordinated methimazolyl sulfur occurs and prevents the successful synthesis of these ligands.     

Electroanalytical methods for determination of the metal content and acetic-acid-available metal fractions in soils

The pseudo-total and available arsenic, cadmium, and lead content of soils have been determined by stripping voltammetry with a hanging-mercury-drop electrode and by atomic absorption spectrometry with electrothermal atomization. For determination of pseudo-total metals microwave digestion with a mixture of HNO3 and HClO4, with and without addition of HF, was investigated. The single-extraction procedure with 0.43 mol L-1 CH3COOH, proposed by BCR, was used to assess the availability of metals in soils. The results obtained were validated by analysis of a certified reference material.     

Tandem Pummerer/Mannich cyclization cascade of alpha-sulfinylamides as a method to prepare aza-heterocycles

A series of alpha-sulfinylenamides was conveniently prepared by the condensation of a primary amine with a ketone, followed by reaction of the resulting imine with ethylsulfenylacetyl chloride and subsequent oxidation with sodium periodate. When treated with p-TsOH, cyclization occurred to produce fused isoquinoline lactams by a mechanism that involves an initial Pummerer reaction followed by a subsequent cyclization of the resulting N-acyliminium ion onto the tethered aromatic ring. The isolation of a single diastereomer was rationalized in terms of a Nazarov-type 4pi-electrocyclic reaction followed by pi-cyclization onto the least hindered side of the N-acyliminium ion. Another method that was used to generate the alpha-acylthionium ion intermediate involved the reaction of bis(ethylsulfenylacetyl)acetamides with dimethyl(methyl)thiosulfonium tetrafluoroborate (DMTSF). Treatment of several bis-ethylsulfenylenamides with DMTSF delivered novel spiro-heterocycles as single diastereomers in good yield by a related process. The convergency and stereochemical control associated with this cascade sequence make it particularly suited for the assembly of natural product scaffolds. Some preliminary studies were directed toward both mesembrine and deethylibophyllidine. When the model Z-enamido sulfoxide 33 was heated with p-TsOH, a 80% yield of tosylate 34 was obtained as a single diastereomer. In this case, the carbocation intermediate derived from cyclization onto the terminal pi-bond was trapped with p-TsOH from the least hindered face, opposite the angular carbomethoxy and methyl groups. Related cyclization cascades were also found to occur with systems containing tethered indole rings.     

Kinetics of two-phase bulk polymerization. II. The influence of dissolved polymer

The effect of dissolved polybutadiene on the initial rate of polymerization of styrene was investigated by using high-precision dilatometric techniques. The dissolved polymer reduced the rate of polymerization by amounts greater than can be accounted for by a reduction in monomer concentration. Rate reductions increased with the amount of dissolved polybutadiene and with its molecular weight and were greater for benzoyl peroxide initiator than for equal concentrations of azobisisobutyronitrile. Surprisingly, analogous rate reductions were observed when polystyrene were substituted for the polybutadienes, except that at high polystyrene concentrations, the expected autoacceleration was observed. These rate reductions showed no correlation with the viscosity of the reaction mass, nor did the dissolved polymer affect initiator efficiency. At a given level of a particular dissolved polybutadiene, rate reductions were diminished by increasing levels of each initiator, and by adding a chain-transfer agent. Good quantitative agreement was obtained with the number-average length of the growing polymer chains, whether varied by using different initiators, changing initiator level, or adding chain-transfer agent. These results are inconsistent with a chemical mechanism, but they are explained by a proposal originated by North and Reed whereby the dissolved polymer makes the reaction mass a “poorer” solvent for the growing polymer chains, reducing their overall coil dimensions and enhancing their rate of diffusion together for termination.     

碳酸二甲酯法合成1，5-二氨基甲酸甲酯的反应机理

应用红外光谱技术研究了在乙酸锌催化作用下1，5-萘二胺与碳酸二甲酯甲氧基羰基化反应机理．结果表明，二水合乙酸锌只有失去两个结晶水变成无水乙酸锌后才能产生催化活性．无水乙酸锌与1，5-萘二胺形成一个新的配位络合物，该配位络合物是一个适宜的亲核试剂，能与碳酸二甲酯进行亲核反应，生成1，5-萘二胺的甲氧基羰基化产物．在无水乙酸锌与1，5-萘二胺形成配位络合物的过程中，无水乙酸锌的结构从双齿型转变成单齿型．