Organic Stereochemistry. Part 5

This review continues a general presentation of the principles of stereochemistry with special reference to the medicinal sciences. Here, we discuss and illustrate molecular and clinical phenomena of stereoselectivity in pharmacological effects, namely activity differences between stereoisomers, principally enantiomers. The review begins with didactic models of chiral recognition, with a main focus on the early model of Easson and Stedman. There follows a Molecular Modeling (MM) and Molecular Dynamics (MD) depiction of the differential interaction of the enantiomers of hyoscyamine with cholinergic muscarinic receptors. The next section is devoted to various rationalizations in stereoselective pharmacological activity, e.g., the influence of optical purity on enantioselectivity, Pfeiffer's rule, and eudismic analysis. The review ends with selected examples taken from various fields of preclinical and clinical pharmacology, of differences between stereoisomers in terms of drug absorption, distribution, and excretion. The influence of conformational factor in molecular pharmacology will be discussed in Part 6, while stereoselective aspects of xenobiotic metabolism will be reviewed in Parts 7 and 8.     

Organic Stereochemistry. Part 7

This review continues a general presentation of the principles of stereochemistry with special emphasis on the biomedicinal sciences. Here, we discuss and illustrate the phenomenon of substrate stereoselectivity in biochemistry (endogenous metabolism) and principally in xenobiochemistry or drug metabolism. The review begins with an overview of the stereoselective processes occurring in the biomedicinal sciences. The general rule is for distinct stereoisomers, be they enantiomers or diastereoisomers, to elicit different pharmacological responses (Part 5), to a lesser extent be transported with different efficacies (Part 5), and to be metabolized at different rates (this Part). In other words, biological environments discriminate between stereoisomers both when acting on them and when being acted upon by them. The concept of substrate stereoselectivity describes this phenomenon in endogenous biochemistry and xenobiotic metabolism, as discussed and illustrated in the present Part. The sister concept of product stereoselectivity will be presented in Part 8.     

Synthesis and Stereochemistry of Some New 1,3-Dioxane Derivatives of 1,4-Diacetylbenzene

 The synthesis and stereochemistry of new 1,3-dioxane derivatives of 1,4-diacetylbenzene are reported. The anancomeric structure of these compounds, the axial orientation of the aryl group for both 1,3-dioxane rings, and the cis and trans isomerism of some of these compounds is discussed considering data of conformational analysis, NMR investigations, and single crystal X-ray diffractometry.     

Structural study of methyl 2,6-diphenyl-N-methyl-4-oxopiperidine-3,5-dicarboxylate enolic forms

The methyl 2,6-diphenyl-1-methyl-4-oxopiperidine-3,5-dicarboxylates 1 were synthesized by the Mannich procedure from methyl 3-oxoglutarate, benzaldehyde and methylamine. Keto-enol tautomerism as well as configurational isomerism at C-2 were observed. The stereochemistry of the Ib and Ic enolic forms were determined by ¹H and ¹³C nmr data.     

Configurational-conformational entropy of 1,4-polydienes

A method based on matrix algebra and on the rotational isomeric state scheme to study the configurational- conformational entropy of 1,4-polydienes with geometrical isomerism has been developed. Bernoullian and first-and second-order Markovian statistics for the sequences of cis and trans units along the chains have been considered, and the explicit relation between entropy and mole fraction of cis units has been derived. Calculations performed by using available experimental data for the configurational parameters and the conformational partition functions of 1,4-polybutadiene and 1,4-polyisoprene show that entropy is a monotonic function of the geometrical isomer composition. While the entropy of polybutadiene increases with the content of cis units, the reverse is true for polyisoprene.     

Synthesis and Stereochemistry of Some New 1,3-Dioxane Derivatives of 1,4-Diacetylbenzene

Summary.  The synthesis and stereochemistry of new 1,3-dioxane derivatives of 1,4-diacetylbenzene are reported. The anancomeric structure of these compounds, the axial orientation of the aryl group for both 1,3-dioxane rings, and the cis and trans isomerism of some of these compounds is discussed considering data of conformational analysis, NMR investigations, and single crystal X-ray diffractometry. Received September 12, 2001. Accepted (revised) November 5, 2001     

Organic Stereochemistry. Part 1. Symmetry Elements and Operations,Classification of Stereoisomers

This review initiates a general presentation of the principles of stereochemistry with special reference to medicinal compounds. The format is essentially identical with that of a previous Series of seven reviews on the Metabolism of Drugs and Other Xenobiotics published between October 2006 and October 2009 by B. T. and Stefanie Krämer in Chemistry & Biodiversity. Here, there will be eight reviews published in Helvetica Chimica Acta, to be grouped and published in book form together with some additional material. Part 1 introduces this new series by presenting and illustrating basic concepts on which the edifice of stereochemistry is built. At the most basic level of such foundations, we find symmetry as presented here in terms of its elements, operations, and point groups. This is followed by a classification of isomeric molecular structures, as well as a classification of steric relationships between molecular fragments.     

Synthesis and Stereochemistry of Substituted 1,3-Dioxa-2-silacyclohexanes: VII. Synthesis and Stereochemistry of Substituted 2-Vinyl-2-methyl-1,3-dioxa-2-silacyclohexanes

The stereochemistry of substituted 2-vinyl-2-methyl-1,3-dioxa-2-silacyclohexanes was studied by ^1Hand ^13C NMR spectroscopy. The configurational and conformational assignment of a mixture of 2-vinyl-2,4-dimethyl-1,3-dioxa-2-silacyclohexane diastereomers with various ratios of the cis and trans forms was made. The molecules of both conformers occur chiefly in the chair conformartion with equatorial location of the methyl group at the C⁴ atom. The experimental data were confirmed by AM1 and MM+ optimization of the molecular geometry.     

Tautomerism and conformational isomerism of mercaptoacetylhydrazones of aliphatic and aromatic aldehydes

Mercaptoacetylhydrazones of aliphatic and aromatic aldehydes exist in the solutions as tautomeric mixtures of open-chain and cyclic 1,3,4-thiadiazine forms. The linear hydrazone form consists of a set of isomers due to the configurational and conformational isomerism. At growing bulk of the alkyl substituent at the C=N bond of the aliphatic aldehydes derivatives decreases the fraction of the cyclic tautomer; therewith the logarithms of the constants of the chain-ring tautomeric equilibrium correlate with the steric constants of the alkyl substituents. In the series of the aromatic aldehydes mercaptoacetylhydrazones the linear tautomer prevails, and the equilibrium position is insignificantlyt affected at variation of the electronic characteristics of the substituents in the aromatic ring.     

Synthesis,stereochemistry and conformational properties of diastereomeric cyclic dipeptides containing tetrahydro-1,4-thiazine-3,5-dicarboxylic acid

The synthesis of linear dipeptides containing N-protected L-phenylalanine and (3R-cis)-tetrahydro-1,4-thiazine-3,5-dicarboxylic acid dialkyl diester residues is described. N-Deprotection of these dipeptides by hydrogenolysis on palladium afforded directly a mixture of cis and trans dioxopiperazines. The stereochemistry and the solution conformational properties of the cyclic dipeptides are determined.     

Rational Design of Macromolecular Structures: Focusing on the Embryonic Stages of Polymerization

Acetate-terminated oligomers of fluoral, chloral and bromal, prepared with the lithium alkoxides of tert-butanol and (-)-borneol, were analyzed by gas chromatography, polarimetry, NMR and mass spectroscopies, and by single crystal x-ray diffraction methods. The configurational and conformational properties of the “embryonic” adducts were found to depend strongly on the relative size of the trihalomethyl side group in these systems. The results of our efforts, summarized here, help to shed new light on the origins of helical geometry and crystalline order in polymers of the perhaloacetaldehydes.     

Studies on the Diastereoselective Preparation of Bis-cyclopropanes

The identification of two natural products, FR-900848 and U-106305, has stimulated interest concerning the relationship between configurational isomerism, conformational isomerism, and biological activity of polycyclopropanes. Efforts to investigate the relationship between configurational and conformational isomerism through molecular modeling suggest that significantly different three-dimensional structures will result from unique primary structures. Any effort to address these issues demands that stereoselective methods for the preparation of polycyclopropanes be developed. We have investigated the application of zinc-carbenoid cyclopropanation in the presence of chiral dioxaboralanes to the preparation of eight stereochemically unique bicyclopropanes. The trans-vinylcyclopropane starting materials demonstrated very little substrate-induced stereoselectivity, while the cis-vinylcyclopropane demonstrates modest to excellent stereocontrol. A model for the substrate-based stereocontrol is proposed. We also used the spectroscopic data gathered in this investigation to probe the substrate-mediated stereocontrol in the rhodium(II)-catalyzed cyclopropanation of vinylcyclopropanes with ethyl diazoacetate.     

General model of assignment of the relative stereochemistry in the Nicholas reaction products resulting from chiral dicobalthexacarbonyl‐1‐alkoxy‐propargylium cations

The Nicholas reaction of chiral 1‐alkoxy‐dicobalthexacarbonyl‐propargylium cations with linear and/or cyclic silyl enol ethers resulted in the formation of two pairs of diastereoisomers (syn‐1, syn‐2 and anti‐1, anti‐2), depending on the relative stereochemistry of the two new stereocenters formed in the reaction products. Here, we present a model to establish the relative stereochemistry of those stereocenters on the basis of a correlation of their ¹H and ¹³C NMR spectra, together with their conformational analysis and a study of the stereoelectronic interactions conditioning the chemical shifts and coupling constants. The importance of this method is based on its applicability to the assignment of the relative stereochemistry of non‐separable components of a diastereomeric mixture or, when diastereomers are non‐crystallizable oily products, not suitable for X‐ray diffraction analysis. Copyright © 2002 John Wiley & Sons, Ltd.     

Fragment interaction analysis in the framework of ab initio UHF MO computations. I. Conformational preference in the ethyl radical

In this paper we describe a procedure which allows to obtain estimates of the energy effects associated with the orbital interactions occurring between the component fragments of a radical species in the framework of ab initio Unrestricted Hartree-Fock computations. This procedure is used here to analyze the factors which control the conformational isomerism of the ethyl radical.On leave from C.N.R.S., GR 12, Thiais, France     

The chain configurational properties of novolak p-cresol–formaldehyde resins

Rotational isomeric state chain configurational analysis has been applied to the p-cresol–form-aldehyde chain structure. Steric interference allows the chain to be considered by using a twofold potential energy barrier. The bond rotational angles and conformational energies were set empirically to fit existing experimental dipole moment data, and the conformational angles were ±45° with a 132 cal/mole energy barrrier separating the g^±g^± from the g^±g^± rotational states. The data predict the existence of a cyclic tetramer in support of other researchers' experimental work. The limiting dipole moment ratio and characteristic ratio were computed to be 5.87 and 21.23, respectively. Support for this structure will have to wait for experimental data from higher-molecular-weight materials.     

A Hundred Years of Stereochemistry—The Principal Development Phases in Retrospect

The theory of the arrangement of atoms in space was initiated in 1874 by van't Hoff and Le Bel. The starting points were mainly in the fields of structural chemistry and optical activity. After early difficulties, stereochemistry gained acceptance in the last quarter of the 19th century and led to many interesting investigations and discoveries: the investigation of geometrical isomerism, the Baeyer strain theory, the stereochemistry of nitrogen, the determination of the configurations of carbohydrates, Walden inversion, and the beginning of inorganic stereochemistry all fall in this period. Theoretical verification of the principal stereochemical hypotheses and the exact determination of the steric arrangement of atoms by physical methods were achieved only in the 20th century.     

Organic Stereochemistry. Part 3

This review continues a general presentation of the principles of stereochemistry with special reference to medicinal compounds. Here, we discuss further stereogenic elements other than the stereogenic centers presented in Part 2. These are the axis of chirality, the plane of chirality, helicity, and (E,Z)‐diastereoisomerism (stereoisomerism about double bonds). Some of these elements of stereoisomerism are not always well understood, and they raise specific convention issues. Isomerization reactions will also be discussed. As far as possible, the examples we present have biochemical and mainly medicinal relevance; a systematic overview concerning biosystems will be presented in Parts 5–8.     

Configurational and conformational aspects of some 5-methylenedisubstituted-3-pyrrolin-2-ones

The influence of the disubstitution at the exocyclic carbon atom of 5-methylene-3-pyrrolin-2-ones upon the configurational and conformational equilibria is studied. The results obtained confirm and extend the observations reported in the literature about the factors determining the configurational and conformational equilibria in monosubstituted systems, i.e.: 5-arylmethylene-3—pyrrolin-2-ones and 5(1H)-pyrromethenones.

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Zur Konfiguration und Konformation von einigen 5-Methylen-disubstituierten-3-pyrrolin-2-onen

Zusammenfassung Es wird der Einfluß der Disubstitution des exocyclischen C-Atoms von 5-Methylen-3-pyrrolin-2-onen auf das Konfigurations- und Konformationsgleich-gewicht untersucht. Die erhaltenen Resultate stehen im Einklang mit der Literatur, die sich auf monosubstituierte Verbindungen [5-Arylmethylen-3-pyrrolin-2-one, 5 (1H)-Pyrromethenone und strukturverwandte Gallenpigmente] beziehen, und vertiefen das Verständnis der Faktoren, die für diese Gleichgewichte maßgebend sind.

     

Topological polymer chemistry by electrostatic self‐assembly

Recent developments in topological polymer chemistry are outlined. First, nonlinear polymer topologies are systematically classified on the basis of topological considerations of constitutional isomerism in a series of alkanes (C_nH_2n+2), monocycloalkanes (C_nH_2n), and polycycloalkanes (C_nH_2n?2, C_nH_2n?4, etc.). Various pairs of topological isomers are identified in randomly coiled, flexible polymer molecules with cyclic and branched structures. An electro‐ static self‐assembly and covalent fixation strategy has subsequently been developed for the efficient synthesis of a variety of topologically unique polymers, including monocyclic and polycyclic polymers, topological isomers, and topological block copolymers. In this process, new telechelics with moderately strained cyclic onium salt groups carrying multifunctional carboxylate counteranions have been designed as key polymeric precursors. Further extensions of topological polymer chem‐ istry have been achieved by the use of cyclic telechelics (kyklo‐telechelics) and cyclic macromonomers, obtainable also by means of the electrostatic self‐assembly and covalent fixation process. © 2003 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 41: 2905–2917, 2003