Covalent Labeling of Nucleosides with VIII‐ and VI‐Valent Osmium Complexes

Osmium tetroxide complexes with nitrogen ligands [Os(VIII)L] have been widely applied as probes of the DNA structure and as electroactive labels of DNA. Here we describe the electrochemical behavior of Os(VIII)2,2‐bipyridine (Os, bipy)‐base‐labeled nucleosides. We show that electroactive label can be introduced also in the nucleoside ribose residues using six‐valent osmium complex. Cyclic voltammograms of sugar‐Os(VI)‐modified ribosides are similar but not identical to those of the base‐modified ribosides. Our results showing the electroactivity of sugar modified ribosides pave the way to facile end‐labeling of RNA.     

Das erste Erdalkalimetall-Mercurato(II)-Palladat(II,IV): Ba2Hg3Pd52+ Pd24+ O14

On the First Alkaline Earth Mercurato(II)-Palladate(II, IV): Ba₂Hg₃Pd₅²⁺Pd₂⁴⁺O₁₄ Single crystals of Ba₂Hg₃Pd₇O₁₄ were prepared by oxygen high-pressure technique (3900 bar) and investigated by X-ray technique. It crystallizes with monoclinic symmetry, space group C–C2/m; Z = 2 (a = 10.583; b = 6,207; c = 10.919 Å, β = 90.56°). The Hg²⁺ ions show partially dumb-bell like and one sided 3 fold coordination respectively. Pd⁴⁺ /Pd²⁺ show an octahedric or square planar surrounding.     

Synthesis of Carbocyclic Pyrimidine Nucleosides Using the Mitsunobu Reaction: O2‐ vs. N1‐Alkylation

The Mitsunobu reaction is an important tool in carbocyclic nucleoside chemistry for the direct coupling of alcohols with heterocyclic bases under mild conditions. Chemical evidences for an unusual competitive O²‐ vs. N¹‐alkylation of 3‐substituted pyrimidines is presented.     

钯(Ⅱ)三元配合物稳定性及其与DNA作用研究

合成了[Pd(bipy)(DL-gly)]Cl•2H₂₂O(2)两个钯三元配合物. 配合物１和２的稳定常数对数值lgβ分别为13.81和13.71, 表征常数ΔlgK、lgX高于统计值, 表明在配合物分子内存在d-p π电子协同效应. 紫外光谱、荧光光谱结果表明, 配合物１和２与鱼精DNA主要以插入方式键合, 键合常数分别为2.37×10⁶(1)和4.57×10⁶(2). CD光谱图也显示, 配合物与DNA分子之间发生了作用. 质粒pBR322 DNA的凝胶电泳图表明, 配合物浓度在3.0０×10^-3～7.5０×10^-4 mol •L^-1范围内对DNA分子有切割作用, 配合物浓度低于3.75×10^-4 mol •L^-1时则主要以插入方式与DNA键合.     

Preparation and Catalytic Properties of Polymer-Bound Schiff Base Ternary Complexes

The polymer-bound Schiff base ternary manganese complexes [PS-SalPhe-Mn-L (L = Phen, Bipy and 8HQ)] have been prepared from the polymer-bound Schiff base ligand, a manganese salt and the second ligand, such as 1,10-phenanthroline (phen), 2,2‘-bipyridyl (bipy) and 8-quinolinol (8HQ). The polymer-bound Schiff base ternary manganese complexes were characterized by means of infrared spectrometry and ICPAES. The catalytic activities of the complexes have been studied in the aerobic epoxidation of long-chain linear aliphatic olefins. It is shown that 1-octene or 1-decene can be directly oxidized by molecular oxygen when catalyzed by PS-SalPhe-Mn-L(L=Phen, Bipy and 8HQ), and 1,2-epoxy alkane can be afforded in these reactions.     

1,3,5‐Triaza‐7‐phosphaadamantane (PTA) Derived Caged Phosphines for Palladium‐Catalyzed Selective Functionalization of Nucleosides and Heteroarenes

Phosphines have, in combination with transition metals, played a pivotal role in the rapid development of efficient catalytic processes. Caged phosphines constitute a class of three‐dimensional scaffolds providing unique control over steric and electronic properties. The versatility of the caged phosphine ligands has been demonstrated elegantly by the groups of Verkade, Gonzalvi as well as Stradiotto. Our research group has also been working extensively for the past several years in the development of 1,3,5‐triaza‐7‐phosphaadamantane‐based caged ligands and in this personal note we have summarized these applications pertaining to the modification of biologically useful nucleosides and heteroarenes.     

One‐dimensionally linked Chain Crown Ether Complexes. Syntheses and Crystal Structures of Complexes [K(18‐Crown‐6)]2[M(SeCN)4](H2O) (M = Pd,Pt)

18‐crown‐6(18‐C‐6) complexes with K₂[M(SeCN)₄] (M = Pd, Pt): [K(18‐C‐6)]₂[Pd(SeCN)₄] (H₂O) ( 1 ) and [K(18‐C‐6)]₂[Pt(SeCN)₄](H₂O) ( 2 ) have been isolated and characterized by elemental analysis, IR spectroscopy and single crystal X‐ray analysis. The complexes crystallize in the monoclinic space group P2₁/n with cell dimensions: 1 : a = 1.1159(3) Å, b = 1.2397(3) Å, c = 1.6003(4) Å, β = 92.798(4)°, V = 2.2111(8) ų, Z = 2, F(000) = 1140, R₁ = 0.0418, wR₂ = 0.0932 and 2 : a = 1.1167(3) Å, b = 1.2394(3) Å, c = 1.5968(4) Å, β = 92.945(4)°, V = 2.2071(9) ų, Z = 2, F(000) = 1204, R₁ = 0.0341, wR₂ = 0.0745. Both complexes form one‐dimensionally linked chains of [K(18‐C‐6)]⁺ cations and [M(SeCN)₄]^2— (M = Pd, Pt) anions bridged by K‐O‐K interactions between adjacent [K(18‐C‐6)]⁺ units.     

Synthesis of 3′,5′‐Cyclic Phosphate and Thiophosphate Esters of 2′‐C‐Methyl Ribonucleosides

2′‐C‐Methylnucleosides are known to exhibit antiviral activity against Hepatitis C virus. Since the inhibitory activity depends on their intracellular conversion to 5′‐triphosphates, dosing as appropriately protected 5′‐phosphates or 5′‐phosphorothioates appears attractive. For this purpose, four potential pro‐drugs of 2′‐C‐methylguanosine, i.e., 3′,5′‐cyclic phosphorothioate of 2′‐C‐methylguanosine and 2′‐C,O⁶‐dimethylguanosine, 1 and 2 , respectively, the S‐[(pivaloyloxy)methyl] ester of 2′‐C,O⁶‐dimethylguanosine 3′,5′‐cyclic phosphorothioate and the O‐methyl ester of 2′‐C,O⁶‐dimethylguanosine 3′,5′‐cyclic phosphate, 3 and 4 , respectively, have been prepared.     

Synthesis and Characterization of [Hg(sulfamethoxazolato)2]·2DMSO and[Cu2(μ‐CH3CO2)4(sulfamethoxazole)2]

[Hg(sulfamethoxazolato)₂]·2DMSO ( 1 ) and [Cu₂(CH₃COO)₄(sulfa‐methoxazole)₂] ( 2 ) can be obtained by the reaction of sulfamethoxazole with mercury acetate or copper acetate in methanol. The structures of the two complexes were characterized by single crystal X—ray diffractometry. Compound 1 consists of sulfamethoxazolato ligands bridging the metal ions building an unidimensional chain. Two solvent dimethylsulfoxide molecules are involved via N‐H···O hydrogen bridges. The mercury atom shows a linear primary coordination arrangement formed by two trans deprotonated sulfonamidic nitrogen atoms. The overall coordination around the metal atom may be regarded as a strongly distorted octahedron when the interactions of mercury with four sulfonamidic oxygen atoms [bond distances of 2.761(4) Å—2.971(4) Å] are also considered to build an equatorial plane and the N1 and N1′ atoms [bond distance of 2.037(5) Å] occupy the apical positions. Compound 2 is a dinuclear complex in which the copper ions are bridged by four syn‐syn acetate ligands which are related by a symmetry centre located in the centre of the complex. Each copper atom presents a nearly octahedral coordination where the equatorial plane is formed by four oxygen atoms and an isoxazolic nitrogen atom and the second copper atom occupy the apical positions.     

Oligonucleotides Containing 7‐Deaza‐2′‐deoxyinosine as Universal Nucleoside: Synthesis of 7‐Halogenated and 7‐Alkynylated Derivatives,Ambiguous Base Pairing,and Dye Functionalization by the Alkyne–Azide ‘Click’ Reaction

Oligonucleotides containing 7‐deaza‐2′‐deoxyinosine derivatives bearing 7‐halogen substituents or 7‐alkynyl groups were prepared. For this, the phosphoramidites 2b – 2g containing 7‐substituted 7‐deaza‐2′‐deoxyinosine analogues 1b – 1g were synthesized (Scheme 2). Hybridization experiments with modified oligonucleotides demonstrate that all 2′‐deoxyinosine derivatives show ambiguous base pairing, as 2′‐deoxyinosine does. The duplex stability decreases in the order C_d>A_d>T_d>G_d when 2b – 2g pair with these canonical nucleosides (Table 6). The self‐complementary duplexes 5′‐d(F⁷c⁷I‐C)₆, d(Br⁷c⁷I‐C)₆, and d(I⁷c⁷I‐C)₆ are more stable than the parent duplex d(c⁷I‐C)₆ (Table 7). An oligonucleotide containing the octa‐1,7‐diyn‐1‐yl derivative 1g , i.e., 27 , was functionalized with the nonfluorescent 3‐azido‐7‐hydroxycoumarin ( 28 ) by the Huisgen–Sharpless–Meldal cycloaddition ‘click’ reaction to afford the highly fluorescent oligonucleotide conjugate 29 (Scheme 3). Consequently, oligonucleotides incorporating the derivative 1g bearing a terminal C?C bond show a number of favorable properties: i) it is possible to activate them by labeling with reporter molecules employing the ‘click’ chemistry. ii) Space demanding residues introduced in the 7‐position of the 7‐deazapurine base does not interfere with duplex structure and stability (Table 8). iii) The ambiguous pairing character of the nucleobase makes them universal probes for numerous applications in oligonucleotide chemistry, molecular biology, and nanobiotechnology.     

Synthesis and Characterization of Monomeric Aryloxo Palladium Complexes of the Type [Pd(N–N)(OAr)(C6F5)]. Crystal Structure of [Pd(tmeda)(C6F5)(OC6H4NO2‐p)]

Mononuclear palladium‐hydroxo complexes of the type [Pd(N–N)(C₆F₅)(OH)][(N–N) = 2,2′‐bipyridine (bipy), 4,4′‐dimethyl‐2,2′‐bipyridine (Me₂bipy), 1,10‐phenantroline (phen) or N,N,N′,N′‐tetramethylethylenediamine (tmeda) react with phenols ArOH in tetrahydrofuran giving the corresponding aryloxo complexes [Pd(N–N)(C₆F₅)(OAr)]. Elemental analyses and spectroscopic (IR, ¹H and ¹⁹F) methods have been used to characterize the new complexes. The X‐ray crystal structure of [Pd(tmeda)(C₆F₅)(OC₆H₄NO₂‐p)] has been determined. In the crystal packing the planes defined by two C₆H₄ rings show a parallel orientation. There are also intermolecular C–H···F and C‐H···O hydrogen bonds.     

Ion‐Pairing Assemblies of Porphyrin–AuIII Complexes in Combination with π‐Electronic Receptor–Anion Complexes

Anion complexes of anion‐responsive π‐electronic molecules can behave as pseudo π‐electronic anions providing various ion pairs in combination with countercations. In this study, single crystals of ion‐pairing assemblies comprising porphyrin–Au^III complexes and Cl^? complexes of dipyrrolyldiketone BF₂ complexes were prepared from 1:1 mixtures of anion receptors and the Cl^? salts of cationic porphyrins in solution. In the solid state, the ion pairs formed characteristic assemblies, depending on the substituents of the anion receptors and porphyrin–Au^III complexes. Theoretical calculations on the ion pairs revealed that the stacking structures are stabilized by compensating positive and negative charges as well as π–π interactions.     

Metal—-Metal “Communication” of Rh or Pd with Nd in Novel Heterobinuclear Complexes

The reaction of a neodymium “ate” complex and an electron-rich transition metal chloride by salt elimination is an efficient method for synthesizing heterobinuclear compounds which contain a lanthanide and a Group 9 or 10 metal [Eq. (1), H₂Ap=2-amino-4-methylpyridine]. The use of bisaminopyridinato ligands allows extremely short distances between Rh or Pd and Nd.     

Electrode Kinetics and Ternary Complex Formation of Cd2+‐Antibiotics‐Vitamin‐B5 System. A Polarographic Study

Cd²⁺ complexes with antibiotics viz. neomycin, chlortetracycline, oxytetracycline, tetracycline, penicillin‐V and penicillin‐G as primary ligands and vitamin‐B₅ as secondary ligand have been reported at pH = 7.30 ± 0.01 and μ = 1.0 M KNO₃ at 298 K by polarographic technique.¹ Cd²⁺ formed 1:1:1, 1:1:2, and 1:2:1 complexes with a stability constants trend of neomycin < chlortetracycline < oxytetracycline < tetracycline < penicillin‐V < penicillin‐G can be explained on the basis of the nature of ligands, bonding, and steric hindrance of these drugs. The nature of electrode processes were reversible and diffusion controlled. The values of stability constants showed that these drugs can be used to reduce the toxicity of Cd.     

Complexes of Group 12 Metal Dihalides with 2‐Acetylpyridine‐N‐oxide 4N‐methylthiosemicarbazone (H4MLO). The Crystal Structures and Organization of [Zn(H4MLO)X2] (X = Br,I)

Reaction of group 12 metal dihalides with 2‐acetylpyridine‐N‐oxide ⁴N‐methylthiosemicarbazone (H4MLO) in ethanol afforded compounds [M(H4MLO)X₂] (M = Zn^II, Cd^II, Hg^II; X = Cl, Br, I), the structures of which were characterized by elemental analysis and by IR and ¹H and ¹³C NMR spectroscopy. In addition, the complexes of ZnBr₂ and ZnI₂ were analysed structurally by X‐ray diffractometry. In [Zn(H4MLO)Br₂] the ligand is O,N,S‐tridentate and the metal is pentacoordinated, while in [Zn(H4MLO)I₂] the thiosemicarbazone is S,O‐bis‐monodentate and the Zn^II cation has a distorted tetrahedral coordination polyhedron. In assays of antifungal activity against Aspergillus niger and Paecilomyces variotii, only the mercury compounds showed any activity, and only [Hg(H4MLO)Cl₂] and [Hg(H4MLO)I₂] were competitive with nystatin against A. niger.     

Kinetics and Mechanisms of the Reactions of π‐Allylpalladium Complexes with Nucleophiles

Which nucleophiles are capable of attacking the allyl ligand of the Pd‐stabilized allyl cation 1 ? This question is answered by the electrophilicity parameter of 1 which is derived from kinetic investigations.     

Preparation of C2‐Symmetric Bis[2‐(diphenylphosphino)ferrocen‐1‐yl]‐ methane and Its Use in Rhodium‐ and Ruthenium‐Catalyzed Hydrogenation

The two diphosphine ligands (R_p,R_p)‐ and (S_p,S_p)‐bis[2‐(diphenylphospino)ferrocenyl]methane, (R_p,R_p)‐ and (S_p,S_p)‐ 1 , resp., were prepared in six steps from (S)‐ and (R)‐ferrocenyl tolyl sulfoxide, respectively (Scheme). In the solid state, both the diborane complex (R_p,R_p)‐ 1 ? (BH₃)₂ and the palladium dichloride complex [PdCl₂((R_p,R_p)‐ 1 )] were found to adopt C₂‐pseudosymmetric structures according to X‐ray analyses (Figs. 2 and 3). In the Rh‐ and Ru‐catalyzed hydrogenation of selected alkenes and ketones in the presence of the new ligands, enantioselectivities of up to 55% ee were obtained.