(9E)‐9‐Benzylidene‐3‐methyl‐2‐methylsulfanyl‐5‐phenyl‐5,6,7,8,9,10‐hexahydropyrimido[4,5‐b]quinolin‐4(3H)‐one: polarized molecules within hydrogen‐bonded bilayers

The molecules of the title compound, C₂₆H₂₅N₃OS, which was prepared by means of an acid‐catalysed cyclocondensation reaction between a 6‐aminopyrimidinone and 2,6‐dibenzylidenecyclohexanone, exhibit a polarized electronic structure, namely (9E)‐9‐benzylidene‐3‐methyl‐2‐methylsulfanyl‐5‐phenyl‐3,5,6,7,8,9‐hexahydropyrimido[4,5‐b]quinolin‐10‐ium‐4‐olate, involving charge separation in the vinylogous amide portion. Four hydrogen bonds, two each of the C—H...O and C—H...π(arene) types, link the molecules into bilayers comprising inversion‐related pairs of sheets, each containing a single type of R₄³(36) ring.     

Analysis of γ‐globulin mobility on routine clinical CE equipment: Exploring its molecular basis and potential clinical utility

A study was conducted on the variability of γ‐globulin mobility in serum protein electrophoresis and its molecular basis. We found that the migration time of γ‐globulins can be reproducibly determined (CV=1.1%) on clinical CE equipment. Moreover, we found a significant difference (p<0.001) in the migration of γ‐globulins between chronic liver disease patients (n=98) and a healthy reference group (n=47). Serum immunoglobulins were purified from these patients' sera using protein L ‐agarose and their glycosylation was studied using CE on a DNA sequencer. This glycomics approach revealed that several non‐sialylated N‐glycans show a moderate Pearson correlation coefficient (r=0.2–0.4) with the migration time of γ‐globulins. Their sialylated structures correlate negatively (r=?0.2 to ?0.3). Immunoglobulins are significantly more sialylated in the healthy reference group compared with the patients (p<0.001). We estimated that sialylation heterogeneity contributes about 36% to the molecular variance (carbohydrates and amino acid composition) that affects the electrophoretic mobility of immunoglobulins. This is the first report on the migration time of γ‐globulins on a clinical CE instrument and its potential clinical value to the routinely analyzed serum protein CE profiles.     

On the Structure of PHB (=Poly[(R)‐3‐hydroxybutanoic Acid]) in Phospholipid Bilayers: Preparation of Trifluoromethyl‐Labeled Oligo[(R)‐3‐hydroxybutanoic Acid] Derivatives

Oligomers of (R)‐3‐hydroxybutanoate (OHB) have previously been shown to transport cations through lipid bilayers. The ion‐transport activity has been attributed to the formation of hydrophobic aggregates or pores, which have been identified by fluorescence‐microscopy measurements of membrane‐incorporated fluorescence‐labeled OHBs. To obtain more information about these aggregates, we describe here the synthesis of the specifically F‐labeled HB oligomers II – IV for structural investigation by means of solid‐state ¹⁹F‐NMR spectroscopic techniques.     

A Cole‐Cole Dielectric Relaxation Analysis of Albumin and γ‐Globulins for Protein Quantification by Electrical Impedance Spectroscopy

Optimal serum protein concentrations are vital for normal body functioning. Affordable while accurate protein quantification methods with minimum processing requirements are needed for diagnosis of related diseases. The standard automated chemistry analyzer is limited by high installation and maintenance costs. This study proposes the use of electrical impedimetric spectroscopy (EIS) as an alternative to current methods. Its practical applicability was tested using albumin and γ‐globulin or their miscellanea in three different media; water, serum and tissue‐mimicking phantoms at 25 °C. Impedance measurements were taken between frequency f=0.10 MHz to 300 MHz by an impedance analyzer. A Cole‐Cole analysis was used to elucidate the stepwise variations in the dielectric parameters of the protein medium so as to obtain empirical dielectric parameter‐protein concentration relationships and their correlation coefficients R². From the results, linear relationships between parameters and protein concentrations with high correlation coefficients over R²=0.90 were observed. Resistance to charge transfer R_ct and characteristic frequency f_c were significantly altered by changing protein concentrations as compared to bulk solution resistance R_s, relaxation time constant τ and shape factor α. The relationships developed would aid in monitoring changes in body fluid protein concentrations by EIS.     

Cobalt(III)‐Mediated Permanent and Stable Immobilization of Histidine‐Tagged Proteins on NTA‐Functionalized Surfaces

We present the cobalt(III)‐mediated interaction between polyhistidine (His)‐tagged proteins and nitrilotriacetic acid (NTA)‐modified surfaces as a general approach for a permanent, oriented, and specific protein immobilization. In this approach, we first form the well‐established Co²⁺‐mediated interaction between NTA and His‐tagged proteins and subsequently oxidize the Co²⁺ center in the complex to Co³⁺. Unlike conventionally used Ni²⁺‐ or Co²⁺‐mediated immobilization, the resulting Co³⁺‐mediated immobilization is resistant toward strong ligands, such as imidazole and ethylenediaminetetraacetic acid (EDTA), and washing off over time because of the high thermodynamic and kinetic stability of the Co³⁺ complex. This immobilization method is compatible with a wide variety of surface coatings, including silane self‐assembled monolayers (SAMs) on glass, thiol SAMs on gold surfaces, and supported lipid bilayers. Furthermore, once the cobalt center has been oxidized, it becomes inert toward reducing agents, specific and unspecific interactions, so that it can be used to orthogonally functionalize surfaces with multiple proteins. Overall, the large number of available His‐tagged proteins and materials with NTA groups make the Co³⁺‐mediated interaction an attractive and widely applicable platform for protein immobilization.     

Benzodifuran‐containing well‐defined π‐conjugated polymers for photovoltaic cells

Two well‐defined alternating π‐conjugated polymers containing a soluble electroactive benzo[1,2‐b:4,5‐b′]difuran (BDF) chromophore, poly(BDF‐(9‐phenylcarbazole)) (PBDFC), and poly(BDF‐benzothiadiazole) (PBDFBTD) were synthesized via Sonogashira copolymerizations. Their optical, electrochemical, and field‐effect charge transport properties were characterized and compared with those of the corresponding homopolymer PBDF and random copolymers of the same overall composition. All these polymers cover broad optical absorption ranges from 250 to 750 nm with narrow optical band gaps of 1.78–2.35 eV. Both PBDF and PBDFBTD show ambipolar redox properties with HOMO levels of ?5.38 and ?5.09 eV, respectively. The field‐effect mobility of holes varies from 2.9 × 10^?8 cm² V^?1 s^?1 in PBDF to 1.0 × 10^?5 cm² V^?1 s^?1 in PBDFBTD. Bulk heterojunction solar cell devices were fabricated using the polymers as the electron donor and [6,6]‐phenyl‐C₆₁‐butyric acid methyl ester as the electron acceptor, leading to power conversion efficiencies of 0.24–0.57% under air mass 1.5 illumination (100 mW cm^?2). These results indicate that their band gaps, molecular electronic energy levels, charge mobilities, and molecular weights are readily tuned by copolymerizing the BDF core with different π‐conjugated units. © 2012 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2012     

Functional carbo‐Butadienes: Nonaromatic Conjugation Effects through a 14‐Carbon, 24‐π‐Electron Backbone

A systematic study of carbo‐butadiene motifs not embedded in an aromatic carbo‐benzene ring is described. Dibutatrienylacetylene (DBA) targets R¹?C(R)?C?C?C(Ph)?C≡C?C(Ph)?C?C?C(R)?R² are devised, in which R is C≡CSiiPr₃ and R¹ and R² are R, H, or 4‐X‐C₆H₄, with the latter including three known representatives (X: H, NMe₂, or NH₂). The synthesis method is based on the SnCl₂‐mediated reduction of pentaynediols prepared by early or late divergent strategies; the latter allows access to a OMe–NO₂ push–pull diaryl‐DBA. If R¹ and R² are H, an over‐reduced dialkynylbutatriene (DAB) with two allenyl caps was isolated instead of the unsubstituted DBA. If R¹=R²=R, the tetraalkynyl‐DBA target was obtained, along with an over‐reduced DBA product with a 12‐membered 1,2‐alkylidene‐1H₂,2H₂‐carbo‐cyclobutadiene ring. X‐ray crystallography shows that all of the acyclic DBAs adopt a planar trans–transoid–trans configuration. The maximum UV/Vis absorption wavelength is found to vary consistently with the overall π‐conjugation extent and, more intriguingly, with the π‐donor character of the aryl X substituents, which varies consistently with the first (reversible) reduction potential and first (irreversible) oxidation peak, as determined by voltammetry.     

A one‐dimensional coordination polymer formed from the reaction of 1,1‐diphenyl‐3,3′‐[(1R,2R)‐cyclohexane‐1,2‐diylbis(azanediyl)]dibut‐2‐en‐1‐one with MnCl2·4H2O

In the title coordination polymer, catena‐poly[[dichloridomanganese(II)]‐μ‐1,1‐diphenyl‐3,3′‐[(1R,2R)‐cyclohexane‐1,2‐diylbis(azaniumylylidene)]dibut‐1‐en‐1‐olate‐κ²O:O′], [MnCl₂(C₂₆H₃₀N₂)]_n, synthesized by the reaction of the chiral Schiff base ligand 1,1‐diphenyl‐3,3′‐[(1R,2R)‐cyclohexane‐1,2‐diylbis(azanediyl)]dibut‐2‐en‐1‐one (L) with MnCl₂·4H₂O, the asymmetric unit contains one crystallographically unique Mn^II ion, one unique spacer ligand, L, and two chloride ions. Each Mn^II ion is four‐coordinated in a distorted tetrahedral coordination environment by two O atoms from two L ligands and by two chloride ligands. The Mn^II ions are bridged by L ligands to form a one‐dimensional chain structure along the a axis. The chloride ligands are monodentate (terminal). The ligand is in the zwitterionic enol form and displays intramolecular ionic N⁺—H...O⁻ hydrogen bonding and π–π interactions between pairs of phenyl rings which strengthen the chains.     

Electrophoretic behavior of DNA‐methyl‐CpG‐binding domain protein complexes revealed by capillary electrophoreses laser‐induced fluorescence

The free solution electrophoretic behavior of DNA‐protein complexes depends on their charge and mass in a certain experimental condition, which are two fundamental properties of DNA‐protein complexes in free solution. Here, we used CE LIF to study the free solution behavior of DNA‐methyl‐CpG‐binding domain protein (MBD2b) complexes through exploring the relationship between the mobilities, charge, and mass of DNA‐protein complexes. This method is based on the effective separation of free DNA and DNA‐protein complexes because of their different electrophoretic mobility in a certain electric field. In order to avoid protein adsorption, a polyacrylamide‐coated capillary was used. Based on the evaluation of the electrophoretic behavior of formed DNA‐MBD2b complexes, we found that the values of (μ₀/μ)‐1 were directly proportional to the charge‐to‐mass ratios of formed complexes, where the μ₀ and μ are the mobility of free DNA probe and DNA‐protein complex, respectively. The models were further validated by the complex mobilities of protein with various lengths of DNA probes. The deviation of experimental and calculated charge‐to‐mass ratios of formed complexes from the theoretical data was less than 10%, suggesting that our models are useful to analyze the DNA‐binding properties of the purified MBD2b protein and help to analyze other DNA‐protein complexes. Additionally, this study enhances the understanding of the influence of the charge‐to‐mass ratios of formed DNA‐protein complexes on their separation and electrophoretic behaviors.     

Capillary Electrophoretic Separation of Tricyclic Antidepressants Using 1‐Alkyl‐3‐Methylimidazolium‐Based Ionic Liquids as Background Electrolyte

A capillary electrophoretic (CE) method coupled with the use of 1‐ethyl‐3‐methylimidazolium tetrafluoroborate (1E‐3MI‐TFB) ionic liquid as background electrolyte (BGE) has been developed for the simultaneous separation of nine tricyclic antidepressants, viz. amitriptyline (Ami), clomipramine (Clo), desipramine (Des), fluphenazine (Flu), imipramine (Imi), nortriptyline (Nor), promazine (Pro), thioridazine (Thi) and trimipramine (Tri). Resolution of TCAs with similar molecular structures and pK_a values was accomplished by minute manipulation of the electrophoretic velocities of TCAs via reversed electroosmotic flow (EOF) generated by adsorption of 1E‐3MI cations onto the capillary wall. The optimal separation was obtained with a 50 mM 1E‐3MI‐TFB as the sole BGE at pH 3. Symmetric peaks with efficiencies up to 2.4 × 10⁵ plates/m were achieved. RSD values on migration times and peak areas were in the ranges of 0.63–0.95% and 3.41–6.34% (n = 4), respectively. The role of different alkyl groups on the imidazolium cations was also investigated.     

Phenylethenyl‐Substituted Triphenylamines: Efficient,Easily Obtainable,and Inexpensive Hole‐Transporting Materials

Star‐shaped charge‐transporting materials with a triphenylamine (TPA) core and various phenylethenyl side arm(s) were obtained in a one‐step synthetic procedure from commercially available and relatively inexpensive starting materials. Crystallinity, glass‐transition temperature, size of the π‐conjugated system, energy levels, and the way molecules pack in the solid state can be significantly influenced by variation of the structure of these side arm(s). An increase in the number of phenylethenyl side arms was found to hinder intramolecular motions of the TPA core, and thereby provide significant enhancement of the fluorescence quantum yield of the TPA derivatives in solution. On the other hand, a larger number of side arms facilitated exciton migration through the dense side‐arm network formed in the solid state and, thus, considerably reduces fluorescence efficiency by migration‐assisted nonradiative relaxation. This dense network enables charges to move more rapidly through the hole‐transport material layer, which results in very good charge drift mobility (μ up to 0.017 cm² V ^?1 s^?1).     

Enantioselective Access to (−)‐Ambrox® Starting from β‐Farnesene

Starting from inexpensive (E)‐β‐farnesene ( 1 ), an eight‐step enantioselective synthesis of the olfactively precious Ambrox^® ((?)‐ 2a ) has been performed. The crucial step is the catalytic asymmetric isomerization of (2E,6E)‐N,N‐diethylfarnesylamine ( 3 ) to the corresponding enamine (?)‐(R,E)‐ 4a , applying Takasago's well‐known industrial methodology. The resulting dihydrofarnesal ((+)‐(R)‐ 5 ) (90% yield, 96% ee), obtained after in situ hydrolysis (AcOH, H₂O), was then cyclized under catalytic SnCl₄ conditions, via its corresponding unreported enol acetate (?)‐(R)‐ 4b , to afford trans‐decalenic aldehyde (+)‐ 6a . Subsequent transformations furnished bicyclic ketone (?)‐ 8a and unsaturated nitrile (+)‐ 11 , both reported as intermediates to access to (?)‐ 2a .     

Quadruple‐Resonance Magic‐Angle Spinning NMR Spectroscopy of Deuterated Solid Proteins

¹H‐detected magic‐angle spinning NMR experiments facilitate structural biology of solid proteins, which requires using deuterated proteins. However, often amide protons cannot be back‐exchanged sufficiently, because of a possible lack of solvent exposure. For such systems, using ²H excitation instead of ¹H excitation can be beneficial because of the larger abundance and shorter longitudinal relaxation time, T₁, of deuterium. A new structure determination approach, “quadruple‐resonance NMR spectroscopy”, is presented which relies on an efficient ²H‐excitation and ²H‐¹³C cross‐polarization (CP) step, combined with ¹H detection. We show that by using ²H‐excited experiments better sensitivity is possible on an SH3 sample recrystallized from 30 % H₂O. For a membrane protein, the ABC transporter ArtMP in native lipid bilayers, different sets of signals can be observed from different initial polarization pathways, which can be evaluated further to extract structural properties.     

Reactions of vinyl ethers with 2‐cyano‐2‐propyl and benzoyloxy radicals

tert‐Butyl, cyclohexyl, n‐propyl, and n‐dodecyl vinyl ethers have been used as comonomers with styrene and methyl methacrylate using ¹³C‐enriched samples of azobis(isobutyronitrile) and benzoyl peroxide as initiators at 60°C. Examination by ¹³C‐NMR spectroscopy of either (¹³CH₃)₂C(CN) or Ph¹³COO end‐groups in the products has shown that the vinyl ethers have low reactivities toward the 2‐cyano‐2‐propyl radical but high reactivities toward the benzoyloxy radical. © 1999 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 37: 771–777, 1999     

Ambipolar Field‐Effect Transistor (FET) and Redox Characteristics of a π‐Conjugated Thiophene/1,3,4‐Thiadiazole CT‐Type Copolymer

Summary: A π‐conjugated charge transfer‐type copolymer consisting of an electron‐donating thiophene and an electron‐accepting 1,3,4‐thiadiazole, P(ThdzTh), underwent facile electrochemical p‐ and n‐doping, as revealed by cyclic voltammetry. The copolymer gave a new ambipolar field‐effect transistor (FET), which showed typical I_DS (source–drain current)–V_DS (source–drain voltage) curves in both a p‐type working mode and an n‐type working mode. In the n‐type working mode, the polymer showed a carrier mobility of about 5 × 10⁻³ cm² · V⁻¹ · s⁻¹ and an on/off ratio of about 3 × 10⁴.

n‐Channel field‐effect transistor characteristics of P(ThdzTh).     

4‐Carboxypiperidinium 1‐carboxycyclobutane‐1‐carboxylate

The title salt, C₆H₁₂NO₂⁺·C₆H₇O₄⁻ or ISO⁺·CBDC⁻, is an ionic ensemble assisted by hydrogen bonds. The amino acid moiety (ISO or piperidine‐4‐carboxylic acid) has a protonated ring N atom (ISO⁺ or 4‐carboxypiperidinium), while the semi‐protonated acid (CBDC⁻ or 1‐carboxycyclobutane‐1‐carboxylate) has the negative charge residing on one carboxylate group, leaving the other as a neutral –COOH group. The –⁺NH₂– state of protonation allows the formation of a two‐dimensional crystal packing consisting of zigzag layers stacked along a separated by van der Waals distances. The layers extend in the bc plane connected by a complex network of N—H...O and O—H...O hydrogen bonds. Wave‐like ribbons, constructed from ISO⁺ and CBDC⁻ units and described by the graph‐set symbols C₃³(10) and R₃³(14), run alternately in opposite directions along c. Intercalated between the ribbons are ISO⁺ cations linked by hydrogen bonds, forming rings described by the graph‐set symbols R₆⁶(30) and R₄²(18). A detailed analysis of the structures of the individual components and the intricate hydrogen‐bond network of the crystal structure is given.     

HPLC法拆分(-)-2(S)-苄基-4-酮-4-(顺式-全氢化异吲哚-2-基)丁酸钙对映体

目的：建立刺激胰岛素分泌的新型降糖药物(-)-2 (S)-苄基-4-酮-4-(顺式-全氢化异吲哚-2-基)丁酸钙对映体的HPLC拆分方法。方法：采用Sumichiral OA-3300手性柱(250 × 4.6 mm I.D., 5 μm), 柱温35℃,以0.05 mol·L-1醋酸铵的甲醇溶液为流动相,检测波长为210 nm。结果：本品两对映体在22分钟内实现良好分离,分离度达3以上,S－异构体分别在0.028 ~ 5.6 μg mL-1和0.03 ~ 6.0 μg mL-1范围内线性关系良好,回归方程分别为：Y=1.32×103x-2.54 (r=0.9997)和Y=1.15×103x-1.78 (r=0.9998),最低检测限分别为0.15 ng和0.10 ng,方法精密度RSD低于1.0% (n=5)。结论：建立的对映体分离方法可用于本品光学异构体的质量控制。     

Stereoselective Reduction of `Capsanthol‐3′‐ones' (=3,6′‐Dihydroxy‐β,κ‐caroten‐3′‐ones) by Complex Hydrides

The (3R,5′R,6′R)‐ and (3R,5′R,6′S)‐capsanthol‐3′‐one (=3,6′‐dihydroxy‐β,κ‐caroten‐3′‐one; 4 and 5 , resp.) were reduced by different complex metal hydrides containing organic ligands. The ratio of the thus obtained diastereoisomeric (3′S)‐capsanthols 2 and 3 or (3′R)‐capsanthols 6 and 7 , respectively, was investigated. Four complex hydrides showed remarkable stereoselectivity and produced the (3′R,6′S)‐capsanthol ( 6 ) in 80 – 100% (see Table 1). The starting materials and the products were characterized by UV/VIS, CD, ¹H‐ and ¹³C‐NMR, and mass spectra.     

Anomalous electrophoretic migration of short oligodeoxynucleotides labelled with 5′‐terminal Cy5 dyes

By using a fluorescent exonuclease assay, we reported unusual electrophoretic mobility of 5′‐indocarbo‐cyanine 5 (5′‐Cy5) labelled DNA fragments in denaturing polyacrylamide gels. Incubation time and enzyme concentration were two parameters involved in the formation of 5′‐Cy5‐labelled degradation products, while the structure of the substrate was slightly interfering. Replacement of positively charged 5′‐Cy5‐labelled DNA oligonucleotides (DNA oligos) by electrically neutral 5′‐carboxyfluorescein (5′‐FAM) labelled DNA oligos abolished the anomalous migration pattern of degradation products. MS analysis demonstrated that anomalously migrating products were in fact 5′‐labelled DNA fragments ranging from 1 to 8 nucleotides. Longer 5′‐Cy5‐labelled DNA fragments migrated at the expected position. Altogether, these data highlighted, for the first time, the influence of the mass/charge ratio of 5′‐Cy5‐labelled DNA oligos on their electrophoretic mobility. Although obtained by performing 3′ to 5′ exonuclease assays with the family B DNA polymerase from Pyrococcus abyssi, these observations represent a major concern in DNA technology involving most DNA degrading enzymes.     

Solution 1H and 13C NMR of new chiral 1,4‐oxazepinium heterocycles and their intermediates from the reaction of 2,4‐pentanedione with α‐L‐amino acids and (R)‐(—)‐2‐phenylglycinol

The reaction of 2,4‐pentanedione ( 1 ) with (R)‐(—)‐2‐phenylglycine methyl ester ( 2 ), (R)‐(—)‐2‐phenylglycinol ( 3 ) and the proteinogenic amino acids (2S,3R)‐(—)‐2‐amino‐3‐hydroxybutyric acid (L ‐threonine) ( 4 ) and (R)‐(—)‐2‐amino‐3‐mercaptopropionic acid (L ‐cysteine) ( 5 ) methyl esters was investigated. The corresponding enamines 6 , 7 and 8 were isolated and characterized spectroscopically whereas 9 , which is unstable, was transformed in situ into 13 . Treatment of 7 , 8 and 9 with boron trifluoride etherate afforded the new [1,4]oxazepines 10 , 11 and [1,4]thiazepine ( 12 ) as their BF₃O^? salts. The structures of the enamines and their corresponding seven‐membered heterocycles were assessed by 1D and 2D NMR spectroscopy. Variable‐temperature experiments revealed different molecular mobility behavior among these heterocycles. Copyright © 2003 John Wiley & Sons, Ltd.