Metal-thiolate bonds in bioinorganic chemistry

Metal-thiolate active sites play major roles in bioinorganic chemistry. The M--S(thiolate) bonds can be very covalent, and involve different orbital interactions. Spectroscopic features of these active sites (intense, low-energy charge transfer transitions) reflect the high covalency of the M--S(thiolate) bonds. The energy of the metal-thiolate bond is fairly insensitive to its ionic/covalent and pi/sigma nature as increasing M--S covalency reduces the charge distribution, hence the ionic term, and these contributions can compensate. Thus, trends observed in stability constants (i.e., the Irving-Williams series) mostly reflect the dominantly ionic contribution to bonding of the innocent ligand being replaced by the thiolate. Due to high effective nuclear charges of the Cu(II) and Fe(III) ions, the cupric- and ferric-thiolate bonds are very covalent, with the former having strong pi and the latter having more sigma character. For the blue copper site, the high pi covalency couples the metal ion into the protein for rapid directional long range electron transfer. For rubredoxins, because the redox active molecular orbital is pi in nature, electron transfer tends to be more localized in the vicinity of the active site. Although the energy of hydrogen bonding of the protein environment to the thiolate ligands tends to be fairly small, H-bonding can significantly affect the covalency of the metal-thiolate bond and contribute to redox tuning by the protein environment.     

The reactions of nitrosyl complexes with cysteine

The reaction kinetics of a set of ruthenium nitrosyl complexes, {(X)5MNO}n, containing different coligands X (polypyridines, NH3, EDTA, pz, and py) with cysteine (excess conditions), were studied by UV-vis spectrophotometry, using stopped-flow techniques, at an appropriate pH, in the range 3-10, and T = 25 degrees C. The selection of coligands afforded a redox-potential range from -0.3 to +0.5 V (vs Ag/AgCl) for the NO+/NO bound couples. Two intermediates were detected. The first one, I1, appears in the range 410-470 nm for the different complexes and is proposed to be a 1:1 adduct, with the S atom of the cysteinate nucleophile bound to the N atom of nitrosyl. The adduct formation step of I1 is an equilibrium, and the kinetic rate constants for the formation and dissociation of the corresponding adducts were determined by studying the cysteine-concentration dependence of the formation rates. The second intermediate, I2, was detected through the decay of I1, with a maximum absorbance at ca. 380 nm. From similar kinetic results and analyses, we propose that a second cysteinate adds to I1 to form I2. By plotting ln k1(RS-) and ln k2(RS-) for the first and second adduct formation steps, respectively, against the redox potentials of the NO+/NO couples, linear free energy plots are obtained, as previously observed with OH- as a nucleophile. The addition rates for both processes increase with the nitrosyl redox potentials, and this reflects a more positive charge at the electrophilic N atom. In a third step, the I2 adducts decay to form the corresponding Ru-aqua complexes, with the release of N2O and formation of cystine, implying a two-electron process for the overall nitrosyl reduction. This is in contrast with the behavior of nitroprusside ([Fe(CN)5NO]2-; NP), which always yields the one-electron reduction product, [Fe(CN)5NO]3-, either under substoichiometric or in excess-cysteine conditions.     

The bioinorganic chemistry and associated immunology of chronic beryllium disease

Chronic beryllium disease (CBD) is a debilitating, incurable, and often fatal disease that is caused by the inhalation of beryllium particulates. The growing use of beryllium in the modern world, in products ranging from computers to dental prosthetics (390 tons of beryllium in the US in the year 2000) necessitates a molecular based understanding of the disease in order to prevent and cure CBD. We have investigated the molecular basis of CBD at Los Alamos National Laboratory during the past six years, employing a multidisciplinary approach of bioinorganic chemistry and immunology. The results of this work, including speciation, inhalation and dissolution, and immunology will be discussed.     

The coordination chemistry ofN-vinylimidazole

Summary The synthesis of coordination compounds of formula M(viz)_n(A)₂ is described, where viz. =N-vinylimidazole, M = Mn, Fe, Co, Ni, Cu, Zn or Cd, A = ClO ₄ ^– , BF ₄ ^– or NO ₃ ^– , and n varies from 3 to 6, depending upon the particular combination of cation and anion. The compounds are easily prepared in ethanol from the hydrated metal(II) salts and the ligand and the products were characterized using i.r., ligand-field, far-i.r. and e.p.r. spectra in conjunction with x-ray powder diagrams and magnetic techniques. Octahedral cations [M(viz)₆]²⁺ are formed in many cases, although square planar species Cu(viz)₄(A)₂ and tetrahedral species [M(viz)₄]²⁺ for M = Co and Zn are also found.Compared withN-alkylimidazole ligands, viz behaves differently in some cases, resulting in special effects in the crystal packing, and can be related to the quite rigid ligand structure. The pyridine-type N-atom of the imidazole ring appears to be coordinated; in all compounds no evidence is found for C=C double bond coordination.     

The coordination chemistry of 1,2,4,5-tetrazines

1,2,4,5-Tetrazine and its 3,6-disubstituted derivatives exhibit a particular coordination chemistry, characterized by electron and charge transfer phenomena and by the ability of these heteroatom-rich ligands to bridge metal centers in various ways. A very low-lying π* orbital localized at the four nitrogen atoms is responsible for intense low-energy charge transfer absorptions, electrical conductivity of coordination polymers, unusual stability of paramagnetic radical or mixed-valent intermediates and for often well-resolved EPR hyperfine structure in the radical complexes. Substituted 1,4-dihydro-1,2,4,5-tetrazines have also been used as bridging ligands. The structural consequences of electron transfer as well as the capability for efficient and variable metal–metal bridging render the tetrazines as valuable components of supramolecular materials.     

The coordination chemistry of the proton

It is well known that an acidic hydrogen atom can form hydrogen bonds to a hydrogen bond acceptor, a Lewis base. It is considerably less known that the proton can coordinate two or more atoms conveniently in bonding modes that cannot be described as hydrogen bonding. Agostic interactions, bridging hydrides, 3-centre-2-electron bonds in boranes, bifurcated hydrogen atoms, they are all elements of the coordination chemistry of the proton and, of course, the hydrogen bond comes in more than one facette as well.     

An entry route into non-aqueous plutonyl coordination chemistry

The Pu(VI) molecular complex, [PuO(2)Cl(2)(thf)(2)]2, is prepared by addition of a HCl/Et(2)O solution to a suspension of PuO(2)CO(3) in thf, yielding the first example of a precursor suitable for investigation of the non-aqueous chemistry of the plutonyl dioxo cation under inert atmospheric conditions.     

Analytical reactions of substituted cyanoferrates: 3. Spectrophotometric determination of azide ion in an aqueous medium

The pentacyanoamminoferrate(II) ion and N^?₃, in acidic condition produce a colored species absorbing at 555 nm that is useful in the spectrophotometric determination of the latter in an aqueous medium. The results show a linear response for N^?₃ in 0.42 to 4.2 ppm range under controlled experimental conditions. Many common anions including Cl^?, SO^2?₄, and NO^?₃ do not interfere, and color development attains maximum intensity in 30 min.     

Hemoglobin--an inspiration for research in coordination chemistry.

Hemoglobin transports oxygen in the blood and is responsible for its red color. Being one of the most closely studied proteins, it is entitled an “honorary enzyme”. This admirable natural substance invites chemists to copy it, imitate it, and vary or modify it. The first means a total synthesis of the original molecule, but such reproduction does not increase our knowledge of its function. In the case of imitation, the biochemical effect of the “original” (i.e. hemoglobin) is achieved in full or in part with simpler molecules of similar structure, i.e. with models. Research is here directed at the function of hemoglobin. In the case of variation or modification the original molecule is changed to various extents, which reveals the factors underlying its action. In all three cases—reproduction, imitation, and modification—hemoglobin serves as an inspiration for research. The aim of the present review is to summarize recent investigations inspired by hemoglobin in the field of coordination chemistry. A brief outline of the coordination chemistry of the porphin system serves as an introduction.     

The coordination chemistry of guanidines and guanidinates

Species containing the Y-shaped CN₃ unit have recently attracted increasing attention as electronically and sterically flexible ligands. Neutral guanidines [(R₂N)₂CNR], guanidinates(−1) [(RN)₂CNR₂]⁻ and guanidinates(2) [(RN)₂CNR]²⁻ are capable of exhibiting a variety of coordination modes and a range of donor properties leading to compatibility with a remarkably wide range of metal ions from all parts of the periodic table. The coordination chemistry of these species is reviewed up to July 2000, and aspects of their electronic structures and metal-ligand bonding characteristics discussed.     

Electronic structure of ferric heme nitrosyl complexes with thiolate coordination

The effect of trans thiolate ligation on the coordinated nitric oxide in ferric heme nitrosyl complexes as a function of the thiolate donor strength, induced by variation of NH-S(thiolate) hydrogen bonds, is explored. Density functional theory (DFT) calculations (BP86/TZVP) are used to define the electronic structures of corresponding six-coordinate ferric [Fe(P)(SR)(NO)] complexes. In contrast to N-donor-coordinated ferric heme nitrosyls, an additional Fe-N(O) sigma interaction that is mediated by the dz2/dxz orbital of Fe and a sigma*-type orbital of NO is observed in the corresponding complexes with S-donor ligands. Experimentally, this is reflected by lower nu(N-O) and nu(Fe-N) stretching frequencies and a bent Fe-N-O moiety in the thiolate-bound case.