Platinum Group Metal Clusters: From Gas‐Phase Structures and Reactivities towards Model Catalysts

Transition‐metal clusters have long been proposed as model systems to study heterogeneous catalysts. In this Concept article we show how advanced spectroscopic techniques can be used to determine the structures of gas‐phase transition‐metal clusters and their complexes with small molecules. Combined with computational studies, this can help to develop an understanding of the reactivity of these catalytic models.     

Gas‐phase interactions of organotin compounds with cysteine

The gas‐phase interactions of cysteine with di‐organotin and tri‐organotin compounds have been studied by mass spectrometry experiments and quantum calculations. Positive‐ion electrospray spectra show that the interaction of di‐ and tri‐organotins with cysteine results in the formation of [(R)₂Sn(Cys‐H)]⁺ and [(R)₃Sn(Cys)]⁺ ions, respectively. MS/MS spectra of [(R)₂Sn(Cys‐H)]⁺ complexes are characterized by numerous fragmentation processes, notably associated with elimination of NH₃ and (C,H₂,O₂). Several dissociation routes are characteristic of each given organic species. Upon collision, both the [(R)₃Sn(Gly)]⁺ and [(R)₃Sn(Cys)]⁺ complexes are associated with elimination of the intact amino acid, leading to the formation of [(R)₃Sn]⁺ cation. But for the latter complex, two additional fragmentation processes are observed, associated with the elimination of NH₃ and C₃H₄O₂S. Calculations indicate that the interaction between organotins and cysteine is predominantly electrostatic but also exhibits a considerable covalent character, which is slightly more pronounced in tri‐organotin complexes. A preferred bidentate interaction of the type ‐η²‐S‐NH₂, with sulfur and the amino group, is observed. As for the [(R)₃Sn(Cys)]⁺ complexes, their stability is due to the combination of the hydrogen bond taking place between the amino group and the sulfur lone pair and the interaction between the carboxylic oxygen atom and the metal. Copyright © 2016 John Wiley & Sons, Ltd.     

Gas‐phase interactions of organotin compounds with glycine

Gas‐phase interactions of organotins with glycine have been studied by combining mass spectrometry experiments and quantum calculations. Positive‐ion electrospray spectra show that the interaction of di‐ and tri‐organotins with glycine results in the formation of [(R)₂Sn(Gly)‐H]⁺and [(R)₃Sn(Gly)]⁺ ions, respectively. Di‐organotin complexes appear much more reactive than those involving tri‐organotins. (MS/MS) spectra of the [(R)₃Sn(Gly)]⁺ ions are indeed simple and only show elimination of intact glycine, generating the [(R)₃Sn]⁺ carbocation. On the other hand, MS/MS spectra of [(R)₂Sn(Gly)‐H]⁺complexes are characterized by numerous fragmentation processes. Six of them, associated with elimination of H₂O, CO, H₂O + CO and formation of [(R)₂SnOH]⁺ (?57 u),[(R)₂SnNH₂]⁺( ?58 u) and [(R)₂SnH]⁺ (?73 u), are systematically observed. Use of labeled glycines notably concludes that the hydrogen atoms eliminated in water and H₂O + CO are labile hydrogens. A similar conclusion can be made for hydrogens of [(R₂)SnOH]⁺and [(R₂)SnNH₂]⁺ions. Interestingly, formation [(R)₂SnH]⁺ ions is characterized by a migration of one the α hydrogen of glycine onto the metallic center. Finally, several dissociation routes are observed and are characteristic of a given organic substituent. Calculations indicated that the interaction between organotins and glycine is mostly electrostatic. For [(R)₂Sn(Gly)‐H]⁺complexes, a preferable bidentate interaction of the type η²‐O,NH2 is observed, similar to that encountered for other metal ions. [(R)₃Sn]⁺ ions strongly stabilize the zwitterionic form of glycine, which is practically degenerate with respect to neutral glycine. In addition, the interconversion between both forms is almost barrierless. Suitable mechanisms are proposed in order to account for the most relevant fragmentation processes. Copyright © 2013 John Wiley & Sons, Ltd.     

Origin of the Regioselectivity in the Gas‐Phase Aniline+CH3+ Electrophilic Aromatic Substitution

Nonadiabatic ab initio molecular dynamics simulations are carried out to monitor the attack of CH₃⁺ on aniline in the gas phase to form the corresponding σ complexes. The reaction is ultrafast and is governed by a single electron transfer within 30 fs, which involves two sequential conical intersections and finally produces a radical pair. Positive‐charge allocation in the aromatic compound is found to govern the substitution pattern in ortho, meta, or para position. Although the major products in the first step of the electrophilic aromatic substitution are the ortho and para σ complexes, initially 26 % of the simulated trajectories also form meta complexes, which then undergo H shifts, mainly to the para position.     

Initial Subsurface Incorporation of Oxygen into Ru(0001): A Density Functional Theory Study

The adsorption and diffusion of oxygen on Ru(0001) surfaces as a function of coverage are systematically investigated by using density functional theory. A high incorporation barrier of low‐coverage adsorbed oxygen into the subsurface is discovered. Calculations show that the adsorption of additional on‐surface oxygen can lower the penetration barrier dramatically. The minimum penetration barrier obtained is 1.81 eV for a path starting with oxygen in mixed on‐surface hcp and fcc sites at an oxygen coverage of 0.75 ML, which should be regarded as close to 1 ML. Energy diagrams show that oxygen‐diffusion barriers on the surface and in the subsurface are much lower than the penetration barrier. Oxygen diffusion on the surface is an indispensable step for its initial incorporation into the subsurface.     

Gas‐Phase Preparation of Carbonic Acid and Its Monomethyl Ester

Carbonic acid (H₂CO₃), an essential molecule of life (e.g., as bicarbonate buffer), has been well characterized in solution and in the solid state, but for a long time, it has eluded its spectral characterization in the gas phase owing to a lack of convenient preparation methods; microwave spectra were recorded only recently. Here we present a novel and general method for the preparation of H₂CO₃ and its monomethyl ester (CH₃OCO₂H) through the gas‐phase pyrolysis of di‐tert‐butyl and tert‐butyl methyl carbonate, respectively. H₂CO₃ and CH₃OCO₂H were trapped in noble‐gas matrices at 8 K, and their infrared spectra match those computed at high levels of theory [focal point analysis beyond CCSD(T)/cc‐pVQZ] very well. Whereas the spectra also perfectly agree with those of the vapor phase above the β‐polymorph of H₂CO₃, this is not true for the previously reported α‐polymorph. Instead, the vapor phase above α‐H₂CO₃ corresponds to CH₃OCO₂H, which sheds new light on the research that has been conducted on molecular H₂CO₃ over the last decades.     

Structure and Dynamics of Oligonucleotides in the Gas Phase

By combining ion‐mobility mass spectrometry experiments with sub‐millisecond classical and ab initio molecular dynamics we fully characterized, for the first time, the dynamic ensemble of a model nucleic acid in the gas phase under electrospray ionization conditions. The studied oligonucleotide unfolds upon vaporization, loses memory of the solution structure, and explores true gas‐phase conformational space. Contrary to our original expectations, the oligonucleotide shows very rich dynamics in three different timescales (multi‐picosecond, nanosecond, and sub‐millisecond). The shorter timescale dynamics has a quantum mechanical nature and leads to changes in the covalent structure, whereas the other two are of classical origin. Overall, this study suggests that a re‐evaluation on our view of the physics of nucleic acids upon vaporization is needed.     

Understanding the Role of Water in Aqueous Ruthenium‐Catalyzed Transfer Hydrogenation of Ketones.

We report an accurate computational study of the role of water in transfer hydrogenation of formaldehyde with a ruthenium‐based catalyst using a water‐specific model. Our results suggest that the reaction mechanism in aqueous solution is significantly different from that in the gas phase or in methanol solution. Previous theoretical studies have shown a concerted hydride and proton transfer in the gas phase (M. Yamakawa, H. Ito, R. Noyori, J. Am. Chem. Soc. 2000 , 122, 1466–1478;J.‐W. Handgraaf, J. N. H. Reek, E. J. Meijer, Organometallics 2003 , 22, 3150–3157; D. A. Alonso, P. Brandt, S. J. M. Nordin, P. G. Andersson, J. Am. Chem. Soc. 1999 , 121, 9580–9588; D. G. I. Petra, J. N. H. Reek, J.‐W. Handgraaf, E. J. Meijer, P. Dierkes, P. C. J. Kamer, J. Brussee, H. E. Schoemaker, P. W. N. M. van Leeuwen, Chem. Eur. J. 2000 , 6, 2818–2829), whereas a delayed, solvent‐mediated proton transfer has been observed in methanol solution (J.‐W. Handgraaf, E. J. Meijer, J. Am. Chem. Soc. 2007 , 129, 3099–3103). In aqueous solution, a concerted transition state is observed, as in the previous studies. However, only the hydride is transferred at that point, whereas the proton is transferred later by a water molecule instead of the catalyst.     

Femtochemistry of trans‐Azomethane: A Combined Experimental and Theoretical Study

The dissociation dynamics of trans‐azomethane upon excitation to the S₁(n,π*) state with a total energy of 93 kcal mol^?1 is investigated using femtosecond‐resolved mass spectrometry in a molecular beam. The transient signal shows an opposite pump–probe excitation feature for the UV (307 nm) and the visible (615 nm) pulses at the perpendicular polarization in comparison with the signal obtained at the parallel polarization: The one‐photon symmetry‐forbidden process excited by the UV pulse is dominant at the perpendicular polarization, whereas the two‐photon symmetry‐allowed process initiated by the visible pulse prevails at the parallel polarization. At the perpendicular polarization, we found that the two C? N bonds of the molecule break in a stepwise manner, that is, the first C? N bond breaks in ≈70 fs followed by the second one in ≈100 fs, with the intermediate characterized. At the parallel polarization, the first C? N bond cleavage was found to occur in 100 fs with the intensity of the symmetry‐allowed transition being one order of magnitude greater than the intensity of the symmetry‐forbidden transition at the perpendicular polarization. Theoretical calculations using time‐dependent density functional theory (TDDFT) and the complete active space self‐consistent field (CASSCF) method have been carried out to characterize the potential energy surface for the ground state, the low‐lying excited states, and the cationic ground state at various levels of theory. Combining the experimental and theoretical results, we identified the elementary steps in the mechanism: The initial driving force of the ultrafast bond‐breaking process of trans‐azomethane (at the perpendicular polarization) is due to the CNNC torsional motion initiated by the vibronic coupling through an intensity‐borrowing mechanism for the symmetry‐forbidden n–π* transition. Following this torsional motion and the associated molecular symmetry breaking, an S₀/S₁ conical intersection (CI) can be reached at a torsional angle of 93.1° (predicted at the CASSCF(8,7)/cc‐pVDZ level of theory). Funneling through the S₀/S₁ CI could activate the asymmetric C? N stretching motion, which is the key motion for the consecutive C? N bond breakages on the femtosecond time scale.     

Group Additive Values for the Gas‐Phase Standard Enthalpy of Formation,Entropy and Heat Capacity of Oxygenates

A complete and consistent set of 60 Benson group additive values (GAVs) for oxygenate molecules and 97 GAVs for oxygenate radicals is provided, which allow to describe their standard enthalpies of formation, entropies and heat capacities. Approximately half of the GAVs for oxygenate molecules and the majority of the GAVs for oxygenate radicals have not been reported before. The values are derived from an extensive and accurate database of thermochemical data obtained by ab initio calculations at the CBS‐QB3 level of theory for 202 molecules and 248 radicals. These compounds include saturated and unsaturated, α‐ and β‐branched, mono‐ and bifunctional oxygenates. Internal rotations were accounted for by using one‐dimensional hindered rotor corrections. The accuracy of the database was further improved by adding bond additive corrections to the CBS‐QB3 standard enthalpies of formation. Furthermore, 14 corrections for non‐nearest‐neighbor interactions (NNI) were introduced for molecules and 12 for radicals. The validity of the constructed group additive model was established by comparing the predicted values with both ab initio calculated values and experimental data for oxygenates and oxygenate radicals. The group additive method predicts standard enthalpies of formation, entropies, and heat capacities with chemical accuracy, respectively, within 4 kJ mol^?1 and 4 J mol^?1 K^?1 for both ab initio calculated and experimental values. As an alternative, the hydrogen bond increment (HBI) method developed by Lay et al. (T. H. Lay, J. W. Bozzelli, A. M. Dean, E. R. Ritter, J. Phys. Chem.­ 1995 , 99, 14514) was used to introduce 77 new HBI structures and to calculate their thermodynamic parameters (Δ_fH°, S°, C_p°). The GAVs reported in this work can be reliably used for the prediction of thermochemical data for large oxygenate compounds, combining rapid prediction with wide‐ranging application.     

Tailor‐Made Ruthenium‐Triphos Catalysts for the Selective Homogeneous Hydrogenation of Lactams

The development of a tailored tridentate ligand enabled the synthesis of a molecular ruthenium‐triphos catalyst, eliminating dimerization as the major deactivation pathway. The novel catalyst design showed strongly increased performance and facilitated the hydrogenation of highly challenging lactam substrates with unprecedented activity and selectivity.     

Vibrational Spectrum and Gas‐Phase Structure of Disulfur Dinitride (S2N2)

Gas‐phase FTIR spectra of the ν₆ (B‐type) and the ν₄ (C‐type) fundamental bands of S₂N₂ (D_2h) were recorded with a resolution of ≤0.004 cm^?1 and the vibrational spectrum of S₂N₂ (D_2h) in solid Ar has been revisited. All IR‐active fundamentals and four combination bands were assigned in excellent agreement with calculated values from anharmonic VPT2 and VCI theory based on (explicitly correlated) coupled‐cluster surfaces. Accurate experimental vibrational ground‐ and excited‐state rotational constants of ³²S₂¹⁴N₂ are obtained from a rovibrational analysis of the ν₆ and ν₄ fundamental bands, and precise zero‐point average r_z (R_z(SN)=1.647694(95) Å, α_z(NSN)=91.1125(33)°) and semi‐experimental equilibrium structures (R_e(SN)=1.64182(33) Å, α_e(NSN)=91.0716(93)°) of S₂N₂ have been established. These are compared to the solid‐state structure of S₂N₂ and structural properties of related sulfur nitrogen compounds and to results of ab initio structure calculations.     

Self‐Assembled Multimetallic/Peptide Complexes: Structures and Unimolecular Reactions of [Mn(GlyGly−H)2n−1]+ and Mn+1(GlyGly−H2n]2+ Clusters in the Gas Phase

The unimolecular chemistry and structures of self‐assembled complexes containing multiple alkaline‐earth‐metal dications and deprotonated GlyGly ligands are investigated. Singly and doubly charged ions [M_n(GlyGly?H)_n‐1]⁺ (n=2–4), [M_n+1(GlyGly?H)_2n]²⁺ (n=2,4,6), and [M(GlyGly?H)GlyGly]⁺ were observed. The losses of 132 Da (GlyGly) and 57 Da (determined to be aminoketene) were the major dissociation pathways for singly charged ions. Doubly charged Mg²⁺ clusters mainly lost GlyGly, whereas those containing Ca²⁺ or Sr²⁺ also underwent charge separation. Except for charge separation, no loss of metal cations was observed. Infrared multiple photon dissociation spectra were the most consistent with the computed IR spectra for the lowest energy structures, in which deprotonation occurs at the carboxyl acid groups and all amide and carboxylate oxygen atoms are complexed to the metal cations. The N?H stretch band, observed at 3350 cm^?1, is indicative of hydrogen bonding between the amine nitrogen atoms and the amide hydrogen atom. This study represents the first into large self‐assembled multimetallic complexes bound by peptide ligands.     

Single‐Electron Self‐Exchange between Cage Hydrocarbons and Their Radical Cations in the Gas Phase

We show that the radical cations of adamantane (C₁₀H₁₆^.+, 1 H^.+) and perdeuteroadamantane (C₁₀D₁₆^.+, 1 D^.+) are stable species in the gas phase. The radical cation of adamantylideneadamantane (C₂₀H₂₈^.+, 2 H^.+) is also stable (as in solution). By using the natural ¹³C abundances of the ions, we determine the rate constants for the reversible isergonic single‐electron transfer (SET) processes involving the dyads 1 H^.+/ 1 H, 1 D^.+/ 1 D and 2 H^.+/ 2 H. Rate constants for the reaction 1 H^.++ 1 D? 1 H+ 1 D^.+ are also determined and Marcus’ cross‐term equation is shown to hold in this case. The rate constants for the isergonic processes are extremely high, practically collision‐controlled. Ab initio computations of the electronic coupling (H_DA) and the reorganization energy (λ) allow rationalization of the mechanism of the process and give insights into the possible role of intermediate complexes in the reaction mechanism.