A theoretical study on the conformation of 3‐phosphinoxido‐ and 3‐phosphono‐1,2,3,4,5,6‐hexahydrophosphinine 1‐oxides

The title compounds ( 2 and 4 ) obtained by the diastereoselective hydrogenation of the corresponding 1,2,3,6‐tetrahydrophosphinine oxides ( 1 and 3 ) were subjected to a detailed quantum chemical study. The possible chair conformers were calculated at the HF/6‐31G* level of theory, according to which, the 1‐phenyl‐3‐P(O)Y₂‐substituted products ( 2 ) exist in the trans₁ form, in which all substituents are equatorial. At the same time, the 1‐ethoxy‐3‐dialkylphosphono compounds ( 4 ) adopt the cis conformations, in which the 1‐ethoxy group is axial and the 3‐P(O)(OR)₂ moiety is equatorial. The major diastereomer ( 4–1 ) is cis₃, in which the 5‐methyl group is axial, while the minor one is cis₁ with an equatorial methyl substituent. It is noteworthy that the rotational position of the exocyclic P(O)Z₂ function affected the energy content of the chair conformer to a high extent. The possibility of the involvement of the twist conformers was also considered. © 2005 Wiley Periodicals, Inc. Heteroatom Chem 16:520–524, 2005; Published online in Wiley InterScience ( www.interscience.wiley.com ). DOI 10.1002/hc.20148     

Influence of Central Metalloligand Geometry on Electronic Communication between Metals: Syntheses,Crystal Structures,MMCT Properties of Isomeric Cyanido‐Bridged Fe2Ru Complexes,and TDDFT Calculations

To investigate how the central metalloligand geometry influences distant or vicinal metal‐to‐metal charge‐transfer (MMCT) properties of polynuclear complexes, cis‐ and trans‐isomeric heterotrimetallic complexes, and their one‐ and two‐electron oxidation products, cis/trans‐ [Cp(dppe)Fe^IINCRu^II(phen)₂CN‐Fe^II(dppe)Cp][PF₆]₂ (cis/trans‐ 1 [PF₆]₂), cis/trans‐[Cp(dppe)Fe^IINCRu^II(phen)₂CNFe^III‐(dppe)Cp][PF₆]₃ (cis/trans‐ 1 [PF₆]₃) and cis/trans‐[Cp(dppe)Fe^IIINCRu^II(phen)₂CN‐Fe^III(dppe)Cp][PF₆]₄ (cis/trans‐ 1 [PF₆]₄) have been synthesized and characterized. Electrochemical measurements show the presence of electronic interactions between the two external Fe^II atoms of the cis‐ and trans‐isomeric complexes cis/trans‐ 1 [PF₆]₂. The electronic properties of all these complexes were studied and compared by spectroscopic techniques and TDDFT//DFT calculations. As expected, both mixed valence complexes cis/trans‐ 1 [PF₆]₃ exhibited different strong absorption signals in the NIR region, which should mainly be attributed to a transition from an MO that is delocalized over the Ru^II‐CN‐Fe^II subunit to a Fe^III d orbital with some contributions from the co‐ligands. Moreover, the NIR transition energy in trans‐ 1 [PF₆]₃ is lower than that in cis‐ 1 [PF₆]₃, which is related to the symmetry of their molecular orbitals on the basis of the molecular orbital analysis. Also, the electronic spectra of the two‐electron oxidized complexes show that trans‐ 1 [PF₆]₄ possesses lower vicinal Ru^II→Fe^III MMCT transition energy than cis‐ 1 [PF₆]₄. Moreover, the assignment of MMCT transition of the oxidized products and the differences of the electronic properties between the cis and trans complexes can be well rationalized using TDDFT//DFT calculations.     

Spin‐component‐scaled double hybrids: An extensive search for the best fifth‐rung functionals blending DFT and perturbation theory

Following up on an earlier preliminary communication (Kozuch and Martin, Phys. Chem. Chem. Phys. 2011, 13 , 20104), we report here in detail on an extensive search for the most accurate spin‐component‐scaled double hybrid functionals [of which conventional double hybrids (DHs) are a special case]. Such fifth‐rung functionals approach the performance of composite ab initio methods such as G3 theory at a fraction of their computational cost, and with analytical derivatives available. In this article, we provide a critical analysis of the variables and components that maximize the accuracy of DHs. These include the selection of the exchange and correlation functionals, the coefficients of each component [density functional theory (DFT), exact exchange, and perturbative correlation in both the same spin and opposite spin terms], and the addition of an ad‐hoc dispersion correction; we have termed these parametrizations “DSD‐DFT” (Dispersion corrected, Spin‐component scaled, Double‐hybrid DFT). Somewhat surprisingly, the quality of DSD‐DFT is only mildly dependent on the underlying DFT exchange and correlation components, with even DSD‐LDA yielding respectable performance. Simple, nonempirical GGAs appear to work best, whereas meta‐GGAs offer no advantage (with the notable exception of B95c). The best correlation components appear to be, in that order, B95c, P86, and PBEc, while essentially any good GGA exchange yields nearly identical results. On further validation with a wider variety of thermochemical, weak interaction, kinetic, and spectroscopic benchmarks, we find that the best functionals are, roughly in that order, DSD‐PBEhB95, DSD‐PBEP86, DSD‐PBEPW91, and DSD‐PBEPBE. In addition, DSD‐PBEP86 and DSD‐PBEPBE can be used without source code modifications in a wider variety of electronic structure codes. Sample job decks for several commonly used such codes are supplied as electronic Supporting Information. Copyright © 2013 Wiley Periodicals, Inc.     

First‐principles calculations on the four phases of BaTiO3

The calculations based on linear combination of atomic orbitals basis functions as implemented in CRYSTAL09 computer code have been performed for cubic, tetragonal, orthorhombic, and rhombohedral modifications of BaTiO₃ crystal. Structural and electronic properties as well as phonon frequencies were obtained using local density approximation, generalized gradient approximation, and hybrid exchange‐correlation density functional theory (DFT) functionals for four stable phases of BaTiO₃. A comparison was made between the results of different DFT techniques. It is concluded that the hybrid PBE0 [J. P. Perdew, K. Burke, M. Ernzerhof, J. Chem. Phys. 1996, 105, 9982.] functional is able to predict correctly the structural stability and phonon properties both for cubic and ferroelectric phases of BaTiO₃. The comparative phonon symmetry analysis in BaTiO₃ four phases has been made basing on the site symmetry and irreducible representation indexes for the first time. © 2012 Wiley Periodicals, Inc.     

Ab initio static and molecular dynamics study of 4-styrylpyridine.

We report an in‐depth theoretical study of 4‐styrylpyridine in its singlet S₀ ground state. The geometries and the relative stabilities of the trans and cis isomers were investigated within density functional theory (DFT) as well as within Hartree–Fock (HF), second‐order Møller–Plesset (MP2), and coupled cluster (CC) theories. The DFT calculations were performed using the B3LYP and PBE functionals, with basis sets of different qualities, and gave results that are very consistent with each other. The molecular structure is thus predicted to be planar at the energy minimum, which is associated with the trans conformation, and to become markedly twisted at the minimum of higher energy, which is associated with the cis conformation. The results of the calculations performed with the post‐HF methods approach those obtained with the DFT methods, provided that the level of treatment of the electronic correlation is high enough and that sufficiently flexible basis sets are used. Calculations carried out within DFT also allowed the determination of the geometry and the energy of the molecule at the biradicaloid transition state associated with the thermal cis?trans isomerization and at the transition states associated with the enantiomerization of the cis isomer and with the rotations of the pyridinyl and phenyl groups in the trans and cis isomers. Car–Parrinello molecular dynamics simulations were also performed at 50, 150, and 300 K using the PBE functional. The studies allowed us to evidence the highly flexible nature of the molecule in both conformations. In particular, the trans isomer was found to exist mainly in a nonplanar form at finite temperatures, while the rotation of the pyridinyl ring in the cis isomer was incidentally observed to take place within ≈1 ps during the simulation carried out at 150 K on this isomer.     

Structural characterization of isomeric 2,3,5‐substituted tetrahydropyrrolo[3,4‐d]isoxazole‐4,6‐diones prepared by cycloaddition of N‐methyl‐C‐arylnitrones to N‐phenyl‐ or N‐methylmaleimide

1,3‐Dipolar cycloaddition reactions of N‐methyl‐C‐arylnitrones with N‐phenyl‐ or N‐methylmaleimide were studied. The reaction of p‐dimethylamino‐, 4‐benzyloxy‐3‐methoxy‐, p‐nitro‐ and p‐chloro‐substituted phenylnitrones with N‐phenylmaleimide gave cis and trans cycloadducts but that of the corresponding phenylnitrones with N‐methylmaleimides only the cis adducts in the case of p‐dimethylamino and 4‐benzyloxy‐3‐methoxy substitution. All cis adducts attain a biased conformation whereas the trans forms are shown (by ¹H NMR at 233 K and ¹³C NMR at 208 K) to be mixtures of two invertomers, namely o‐(N‐lone pair antiperiplanar to 3H; minor) and i‐conformations (3H‐C‐C‐3aH dihedral angle close to 90°; major). PM3 and DFT calculations at the B3LYP/6–31G(d) level of theory prove qualitatively that these two conformers of the trans adduct are of comparable stability and represent energy minima.     

Conformation‐Determined Through‐Bond versus Through‐Space Electronic Communication in Mixed‐Valence Systems with a Cross‐Conjugated Urea Bridge

Bis‐triarylamine 2 and cyclometalated diruthenium 6 (PF₆)₂ with a linear trans,trans‐urea bridge have been prepared, together with the bis‐triarylamine 3 and cyclometalated diruthenium 8 (PF₆)₂ with a folded cis,cis‐N,N‐dimethylurea bridge. The linear or folded conformations of these molecules are supported by single‐crystal X‐ray structures of 2 , 3 , and other related compounds. These compounds display two consecutive anodic redox waves (N ^{. +/0} or Ru^III/II processes) with a potential separation of 110–170 mV. This suggests that an efficient electronic coupling is present between two redox termini through the cross‐conjugated urea bridge. The degree of electronic coupling has been investigated by using spectroelectrochemical measurements. Distinct intervalence charge‐transfer (IVCT) transitions have been observed for mixed‐valent (MV) compounds with a linear conformation. The IVCT transitions can also be identified for the folded MV compounds, albeit with a much weaker intensity. DFT results support that the electronic communication occurs by a through‐bond and through‐space pathway for the linear and folded compounds, respectively. The IVCT transitions of the MV compounds have been reproduced by TDDFT calculations. For the purpose of comparison, a bistriarylamine and a diruthenium complex with an imidazolidin‐2‐one bridge and a urea‐containing mono‐triarylamine and monoruthenium complex have been synthesized and studied.     

Poly(1,4‐cyclohexylenedimethylene 1,4‐cyclohexanedicarboxylate): Influence of stereochemistry of 1,4‐cyclohexylene units on the thermal properties

A series of poly(1,4‐cyclohexylenedimethylene 1,4‐cyclohexanedicarboxylate) (PCCD) samples, characterized by different cis/trans ratio of the 1,4‐cyclohexanedicarbonyl unit, have been synthesized and analyzed by thermogravimetry (TGA), calorimetry (DSC), and X‐ray diffraction (WAXD). The thermal stability results are good and are not affected by the stereochemistry of the 1,4‐cyclohexylene units. On the other hand, the thermal transitions are notably influenced by the cis/trans content. With the increment of the trans content the polymer changes from completely amorphous to semicrystalline material. T_g, T_m, and crystallinity increase. These results suggest that the trans configuration induces a better chain packing and higher symmetry, improving the crystallizability of the samples. The effect of the molecular structure on the thermal properties is analyzed by using a statistical approach. From the effective correlations found between stereochemistry of the C₆ rings and transition temperatures it is possible to extrapolate that the configuration of 1,4‐cyclohexylene ring deriving from 1,4‐cyclohexanedicarboxylic acid or dimethyl 1,4‐cyclohexanedicarboxylate results to be the main element responsible for the thermal properties. This is due to the high rigidity of the 1,4‐cyclohexanedicarbonyl unit with respect to 1,4‐cyclohexanedimethyleneoxy unit, deriving from the diol. © 2008 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 46: 619–630, 2008     

Cationic photopolymerization of cis‐2,3‐tetramethylene‐1,4,6‐trioxaspiro[4,4]nonane

The spiro‐orthoester, cis‐2,3‐tetramethylene‐1,4,6‐trioxaspiro[4,4]nonane (cis‐TTN) ( I ), underwent rapid cationic photopolymerization when exposed to UV light using diphenyliodonium salts as a photoinitiator. The polymer, poly[(trans‐OCB)_x′‐(cis‐OCB)_x″‐(CHO)_y] thus formed consisted of poly(trans‐2‐oxycyclohexyl butanoate) (trans‐OCB)_x′ ( II ), poly(cis‐2‐oxycyclohexyl butanoate) (cis‐OCB)_x″ ( III ), and poly‐ (1,2‐cyclohexene oxide) (CHO)_y segments, and no expected pure poly(ether‐ester), that is, poly(2‐oxycyclohexyl butanoate), was isolated. The structure of the polymer was identified, and the mechanism of the reaction was deduced. The polymer thus formed exhibited expansion in volume during cationic photopolymerization when compared to that obtained by conventional cationic polymerization using a Lewis acid (e.g., BF₃OEt₂, CH₃OSO₂CF₃, or SnCl₄) as an initiator, which demonstrated volume shrinkage during polymerization. The volume expansion of the polymer during polymerization was due to (1) the lower content of the higher density (CHO)_y segment in the polymer chain and, more importantly, (2) the higher and optimal mole ratio of (trans‐OCB)_x′ and (cis‐OCB)_x″ segments that led the polymer in a more disordered, less dense, and higher volumetric state. © 2009 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 47: 3680–3690, 2009     

Quantum study on the electrocyclic reactions of CH2CHCHCHX (XH,F, Cl)

The microscopic mechanisms of the electrocyclic reactions for cis‐1,3‐butadiene and its monofluoro‐, monochloroderivatives have been studied by density functional theory (DFT), using the B3LYP method and 6‐311++G** basis sets. We optimized the geometric configurations of reactants, transition states, and products; verified all the probable transition states through vibrational analysis; and calculated the relative single‐point energies at the QCISD(T)/6‐311++G**//B3LYP/6‐311++G**. The results show that the monofluoro‐, monochloroderivatives of cis‐1,3‐butadiene both have two conformers; the reactant favors the electrocyclic reaction when one outboard hydrogen atom of the CH₂ groups is substituted by the fluorine or chlorine atom. © 2004 Wiley Periodicals, Inc. Int J Quantum Chem, 2004     

Uranium–Carbene–Imido Metalla‐Allenes: Ancillary‐Ligand‐Controlled cis‐/trans‐Isomerisation and Assessment of trans Influence in the R2C=UIV=NR′ Unit (R=Ph2PNSiMe3; R′=CPh3)

Uranium(IV)–carbene–imido complexes [U(BIPM^TMS)(NCPh₃)(κ²‐N,N′‐BIPY)] ( 2 ; BIPM^TMS=C(PPh₂NSiMe₃)₂; BIPY=2,2‐bipyridine) and [U(BIPM^TMS)(NCPh₃)(DMAP)₂] ( 3 ; DMAP=4‐dimethylamino‐pyridine) that contain unprecedented, discrete R₂C=U=NR′ units are reported. These complexes complete the family of E=U=E (E=CR₂, NR, O) metalla‐allenes with feasible first‐row hetero‐element combinations. Intriguingly, 2 and 3 contain cis‐ and trans‐C=U=N units, respectively, representing rare examples of controllable cis/trans isomerisation in f‐block chemistry. This work reveals a clear‐cut example of the trans influence in a mid‐valent uranium system, and thus a strong preference for the cis isomer, which is computed in a co‐ligand‐free truncated model—to isolate the electronic trans influence from steric contributions—to be more stable than the trans isomer by approximately 12 kJ mol^?1 with an isomerisation barrier of approximately 14 kJ mol^?1.     

Structural Properties and Stereochemically Distinct Folding Preferences of 4,5‐cis and trans‐Methano‐L‐Proline Oligomers: The Shortest Crystalline PPII‐Type Helical Proline‐Derived Tetramer

The synthesis, structural properties, and folding patterns of a series of L ‐proline methanologues represented by cis‐ and trans‐4,5‐methano‐L ‐proline amides and their oligomers are reported as revealed by X‐ray crystallography, circular dichroism measurements, and DFT calculations. We disclose the first example of a crystalline tetrameric proline congener to exhibit a polyproline II helical conformation. Experimental evidence of PPII‐type helical arrangement (both in solution and in the solid state) of cis‐4,5‐methano‐L ‐proline oligomers is supported by theoretical calculations reflecting the extent of n→π* stabilization of the trans‐amide conformation.     

cis‐trans Peptide‐Bond Isomerization in α‐Methylproline Derivatives

α‐Methyl‐L ‐proline is an α‐substituted analog of proline that has been previously employed to constrain prolyl peptide bonds in a trans conformation. Here, we revisit the cis‐trans prolyl peptide bond equilibrium in derivatives of α‐methyl‐L ‐proline, such as N‐Boc‐protected α‐methyl‐L ‐proline and the hexapeptide H‐Ala‐Tyr‐αMePro‐Tyr‐Asp‐Val‐OH. In Boc‐α‐methyl‐L ‐proline, we found that both cis and trans conformers were populated, whereas, in the short peptide, only the trans conformer was detected. The energy barrier for the cis‐trans isomerization in Boc‐α‐methyl‐L ‐proline was determined by line‐shape analysis of NMR spectra obtained at different temperatures and found to be 1.24 kcal/mol (at 298 K) higher than the corresponding value for Boc‐L ‐proline. These findings further illuminate the conformationally constraining properties of α‐methyl‐L ‐proline.     

carbo‐Naphthalene: A Polycyclic carbo‐Benzenoid Fragment of α‐Graphyne

A ring carbo‐mer of naphthalene, C₃₂Ar₈ (Ar=p‐n‐pentylphenyl), has been obtained as a stable blue chromophore, after a 19‐step synthetic route involving methods inspired from those used in the synthesis of carbo‐benzenes, or specifically devised for the present target, like a double Sonogashira‐type coupling reaction. The last step is a SnCl₂/HCl‐mediated reduction of a decaoxy‐carbo‐decalin, which is prepared through successive [8+10] macrocyclization steps. Two carbo‐benzene references are also described, C₁₈Ar₆ and o‐C₁₈Ar₄(C≡C‐SiiPr₃)₂. The carbo‐naphthalene bicycle is locally aromatic according to structural and magnetic criteria, as revealed by strong diatropic ring current effects on the deshielding of ¹H nuclei of the Ar groups and on the negative value of the DFT‐calculated NICS at the center of the C₁₈ rings (?12.8 ppm). The stability and aromaticity of this smallest fused molecular fragment of α‐graphyne allows prediction of the same properties for the carbon allotrope itself.     

The Structure and Torsional Dynamics of Two Methyl Groups in 2‐Acetyl‐5‐methylfuran as Observed by Microwave Spectroscopy

The molecular‐beam Fourier transform microwave spectrum of 2‐acetyl‐5‐methylfuran is recorded in the frequency range 2–26.5 GHz. Quantum chemical calculations calculate two conformers with trans or cis configuration of the acetyl group, both of which are assigned in the experimental spectrum. All rotational transitions split into quintets due to the internal rotations of two nonequivalent methyl groups. By using the program XIAM, the experimental spectra can be simulated with standard deviations within the measurement accuracy, and yield well‐determined rotational and internal rotation parameters, inter alia the V₃ potentials. Whereas the V₃ barrier height of the ring‐methyl rotor does not change for the two conformers, that of the acetyl‐methyl rotor differs by about 100 cm^?1. The predicted values from quantum chemistry are only on the correct order of magnitude.     

Synthesis and Characterization of Novel Gold(III) Complexes of Asymmetrically Aryl‐Substituted 1,2‐Dithiolene Ligands Featuring Potential‐Controlled Spectroscopic Properties

The tetrabutylammonium (TBA⁺) salts of square‐planar monoanionic gold complexes of the unsymmetrically substituted Ar,H‐edt^2? 1,2‐dithiolene ligands (Ar,H‐edt^2?=arylethylene‐1,2‐dithiolato; Ar=phenyl ( 1 ^?), 2‐naphthyl ( 2 ^?), and 1‐pyrenyl ( 3 ^?)) were synthesized and characterized by spectroscopic and electrochemical methods and the corresponding neutral species ( 1 , 2 , and 3 , respectively) were obtained in CH₂Cl₂ solution at room temperature by diiodine oxidation. The single‐crystal X‐ray diffraction structural data collected for (TBA⁺)( 2 ^?), supported by DFT theoretical calculations, are consistent with the ene‐1,2‐dithiolate form of the ligand and the Au^III oxidation state. All complexes feature intense near‐IR absorptions (at about 1.5 μm) in their neutral states and Vis‐emitting properties in the 400–550 nm range, the energy of which is controlled by the charge of the complex in the case of the 3 ^?/ 3 couple. The spectroscopic and electrochemical features of 1 ^x? and 2 ^x? (x=0, 1), both in their cis and trans conformations, were investigated by means of DFT and time‐dependent (TD) DFT calculations.     

Applications of density functional theory methods in millimeter‐wave spectroscopy

Density functional theory (DFT), using the most common functionals, and ab initio quantum chemistry methods are used to calculate the rotational constants and dipole moments of the astrophysically important molecules HCN, CH₃CN, CH₃CNH⁺, HCCCN, and HCCNC. As far as millimeter‐wave spectroscopy is of interest the DFT methods performed well with most functionals, giving results within ±1% of experiments for rotational constants and ±3% for dipole moments. Analyzing the results obtained with all theoretical models, it may be concluded that the Becke's three‐parameter exchange functional and the gradient‐corrected functional of Lee, Yang, and Paar (B3LYP) and Becke's three‐parameter functional with Perdew–Wang correlational functional [B3PW91/6‐31G(d, p)] give the best performances. A detailed analysis of the electron correlation effects shows that HCCCN is more stable than is HCCNC, by 1.16 eV, with important contribution arising from triple excitations. This result is also compared with those obtained with DFT methods. Despite occasional difficulties, DFT with the currently available functionals are of great utility in quickly assessing spectroscopic parameters of astrophysical interest. © 2002 Wiley Periodicals, Inc. Int J Quantum Chem, 2003