Computational studies of effects of tubular lengths on the NMR properties of pristine and carbon decorated boron phosphide nanotubes

Density functional theory (DFT) calculations were performed to investigate the effects of tubular lengths on the nuclear magnetic resonance (NMR) properties of boron phosphide (BP) nanotubes. To this aim, the properties of pristine and carbon decorated (C-decorated) models of representative zigzag and armchair BP nanotubes were investigated. The results indicated that the atoms at the edges of nanotubes do not detect any significant changes. The NMR properties of boron atoms only detect slight changes but those of phosphorous atoms are more notable.     

Influence of Mn-doping on the chemical shielding tensors of Ga and N in the armchair GaN nanotubes: A DFT study

The chemical shielding (CS) tensors of Gallium-71 and nitrogen-15 are computed for the first time in order to investigate the influence of Mn-doping on the electronic properties of the (5, 5) Gallium nitride nanotube (GaNNT). A GaNNT consisting of 40 Ga and 40 N atoms and having a 1.2 nm length was considered. One portal of the nanotube was capped by ten hydrogen atoms and other-end was kept open. Additionally, two other forms of this model of Mn-doped GaNNT were considered where a Mn-atom was substituted for a Ga atom either in the first or in the second layer. The calculations reveal that in both models of Mn-doped GaNNTs, the N atoms that are directly connected to the Mn atom have the smallest isotropic chemical shielding among other N atoms. These calculations were performed at the level of the density functional theory (DFT) using GAUSSIAN 03 package. The basis sets for Ga and N atoms were chosen to be 6-31G (d) and those for Mn atom were chosen to be LanL2DZ.     

First-principles study of hydrogen adsorption on Mo(1 1 0)

First-principles calculations based on density functional theory-generalized gradient approximation method have been performed for hydrogen (H) adsorption on Mo(1 1 0) surface. For various coverages, the hollow (hol) site was found to be the most stable binding site. The adsorption energy of this site was slightly increased as the increasing of hydrogen coverage. Subsurface (sub) occupation at low and medium coverages was ruled out while it became to be stable at the coverage of 1 ML. This is also supported by the potential energy surface (PES) study for hydrogen diffusing from hol to sub site. It’s interesting to find a surface reconstruction at the coverage of 1 ML, which is characterized by the lateral shift of the topmost layer for the sub adsorption. At higher coverage, the local density of states (LDOS) analysis showed that a new peak was clearly visible which was ascribed to a surface state induced by hydrogen adsorption. This surface state was mostly localized on the hydrogen atom and the first Mo layer, implying the hybridization of the hydrogen 1s states and the Mo metal states.     

General trends of the carbon penetration in Si(0 0 1) surfaces: influences of relevant parameters

Due to its importance in Si-based devices, carbon incorporation in a silicon matrix has become an object of intensive research. However, the size difference between carbon and silicon makes this incorporation difficult, and only small amounts of carbon (a few percent) can be introduced without giving rise to SiC precipitation. Experimental and theoretical studies combined together have led to important progress in the general understanding of surface–subsurface carbon incorporation in the clean and hydrogenated Si(0 0 1) reconstructed surfaces. These results emphasize the role of the surface reconstruction and the carbon–carbon interactions. However, the Si(0 0 1) surface often presents defects such as dimer vacancies or ad-dimers. By modifying the local stress, these defects can play an important role in carbon incorporation. We review the results of recent studies and discuss the role of different relevant parameters such as local stress, carbon–defect interactions, carbon concentration, position and orientation of the defects, defect–defect distance, defect concentration… Finally, we show how, acting on the surface defects, one might improve carbon penetration in Si(0 0 1) and allow a better control of the carbon position in the subsurface layers.     

A DFT study on structural stability and electronic property of VIIIB transition metal-doped carbon nanocaps

Carbon nanocap (CNC) was selected for the systems doped with VIIIB transition metal (TM) atoms. The geometrical structures and electronic properties of TM-doped CNCs were calculated using the density functional theory method. It was found that TM atoms can interact with CNC to form TM–CNC complexes, which corresponded with the large partial charge transfer. All of molecular orbitals of TM–CNC complexes were localized in vicinity doping site. The density of states of these TM-doped CNCs were exhibited mostly metallic or narrow–gap semiconductor.     

Addition reactions of nitrones on the reconstructed C(1 0 0)-2 × 1 surfaces

In this paper, the reactions of nitrone, N-methyl nitrone, N-phenyl nitrone and their hydroxylamine tautomers (vinyl-hydroxylamine, N-methyl-vinyl-hydroxylamine and N-phenyl-vinyl-hydroxylamine) on the reconstructed C(1 0 0)-2 × 1 surface have been investigated using hybrid density functional theory (B3LYP), Møller–Plesset second-order perturbation (MP2) and multi-configuration complete-active-space self-consistent-field (CASSCF) methods. The calculations showed that all the nitrones can react with the surface “dimer” via facile 1,3-dipolar cycloaddition with small activation barriers (less than 12.0 kJ/mol at B3LYP/6-31g(d) level). The [2+2] cycloaddition of hydroxylamine tautomers on the C(1 0 0) surface follows a diradical mechanism. Hydroxylamine tautomers first form diradical intermediates with the reconstructed C(1 0 0)-2 × 1 surface by overcoming a large activation barrier of 50–60 kJ/mol (B3LYP), then generate [2+2] cycloaddition products via diradical transition states with negligible activation barriers. The surface reactions result in hydroxyl or amino-terminated diamond surfaces, which offers new opportunity for further modifications.     

CnBδ(δ=0, ±1; n =1～6)团簇的结构、稳定性和光谱

采用密度泛函理论(DFT)的B3LYP方法,在6-31G*和6-311＋G(3df)水平上对C_nB(n=1～6)团簇及其阴离子和阳离子的几何构型和电子结构进行了优化和振动频率计算.得到了C_nB(n=1～6)团簇的电离能,绝热电子亲合势以及C_nB^δ(δ=0,±1)团簇的能隙.结果表明C_nB^－(n=1～6)团簇的基态构型均为线形,这与等电子的C_n簇合物的结构是一致的; C_nB(n=1～6)团簇的基态构型中,除C₂B为不对称的三角形,C₆B为具有C_2v对称性的环状结构外,其余均为线形结构.阳离子团簇中n=2、3、6的基态结构具有C_2v对称性外,其它几个均为线形结构.从几何参数和振动频率上发现,采用密度泛函B3LYP方法在6-311＋G(3df)和6-31G*两种基组上计算得到的键长参数和振动频率非常接近,说明B3LYP方法在计算C_nB簇合物结构参数上对于基组的选择是不太敏感的.通过对C_nB(n=1～6)的光电子能谱性质的研究发现,C₄B容易获得一个电子形成阴离子团簇,但失去一个电子是很困难的,这与实验上观测到的结果非常吻合.     

Formal chromium–chromium triple bonds and bent rings in the binuclear cycloheptatrienylchromium carbonyls (C7H7)2Cr2(CO)n (n = 6, 5, 4, 3, 2, 1, 0): A density functional theory study

Binuclear cycloheptatrienylchromium carbonyls of the type (C₇H₇)₂Cr₂(CO)_n (n = 6, 5, 4, 3, 2, 1, 0) have been investigated by density functional theory. Energetically competitive structures with fully bonded heptahapto η⁷-C₇H₇ rings are not found for (C₇H₇)₂Cr₂(CO)_n structures having two or more carbonyl groups. This result stands in contrast to the related (C_nH_n)₂M₂(CO)_n (M = Mn, n = 6; M = Fe, n = 5; M = Co, n = 4) systems. Most of the predicted (C₇H₇)₂Cr₂(CO)_n structures have bent trihapto or pentahapto C₇H₇ rings and CrCr distances in the range 2.4–2.5 Å suggesting formal triple bonds. In some cases rearrangement of the heptagonal C₇H₇ ring to a tridentate cyclopropyldivinyl or tridentate bis(carbene)alkyl ligand is observed. In addition structures with CO insertion into the C₇H₇–Cr bond are predicted for (C₇H₇)₂Cr₂(CO)_n (n = 6, 4, 2). The global minima found for the (C₇H₇)₂Cr₂(CO)_n derivatives for n = 6, 5, and 4 are (η⁵-C₇H₇)(OC)₂CrCr(CO)₄(η¹-C₇H₇), (η³-C₇H₇)(OC)₂CrCr(CO)₃(η^2,1- C₇H₇), and (η⁵-C₇H₇)₂Cr₂(CO)₄, respectively. The global minima for (C₇H₇)₂Cr₂(CO)_n (n = 3, 2) have rearranged C₇H₇ groups. Singlet and triplet structures with heptahapto η⁷-C₇H₇ rings are found for the dimetallocenes (η⁷-C₇H₇)₂Cr₂(CO) and (η⁷-C₇H₇)₂Cr₂, with the singlet structures being of much lower energies in both cases.     

Interaction of vitamins A,B1, C,B3 and D with zigzag and armchair boron nitride nanotubes: A DFT study

In this work, based on the density functional theory, the interaction of vitamins A, B1, C, B3 and D with (5, 5) armchair and (9, 0) zigzag single-walled boron nitride nanotubes (BNNTs) are studied. It is found that binding of vitamins A, B1, C, B3 and D with (9, 0) and (5, 5) BNNTs is thermodynamically favorable. Calculated solvation energies show that the solubility of functionalized (9, 0) BNNTs is higher than that of functionalized (5, 5) BNNT, and both dissolutions in water are spontaneous. The results showed that BNNTs can act as a suitable drug delivery vehicle for vitamins A, B1, C, B3 and D within biological systems. This study may provide a new insight into the development of the functionalized boron nitride nanotubes as drug delivery systems for virtual applications.     

Conformational fluxionality in a palladium(II) complex of flexible click chelator 4-phenyl-1-(2-picolyl)-1,2,3-triazole: A dynamic NMR and DFT study

An experimental and theoretical DFT study was carried out on the solution behavior in [D₇]DMF for bis-chelate complex [Pd(L)₂](BF₄)₂·2CH₃CN (L = 4-phenyl-1-(2-picolyl)-1,2,3-triazole). In structure of [Pd(L)₂]²⁺, the central square-planar palladium(II) cation is trans-chelated by two L substrates, each through the pyridine and the triazole N2 nitrogen atoms, forming two six-membered metallacycles. These can adopt boat-like conformations anti-trans-[Pd(L)₂]²⁺ and syn-trans-[Pd(L)₂]²⁺ in which the picolyl methylene carbons are anti or syn, respectively, relative to the palladium coordination plane. In solution, the boat-to-boat inversion at both metallacycles takes place. The conformers are in a dynamic equilibrium, which was monitored by variable-temperature (VT) ¹H NMR spectroscopy in the temperature range of 223-353 K. The equilibrium lies on the side of the anti-trans-[Pd(L)₂]²⁺ conformer and the corresponding reaction enthalpy and entropy is estimated to be 0.6 ± 0.5 kcal mol⁻¹ and 0.8 ± 1 cal mol⁻¹ K⁻¹, respectively. From the full-line-shape analysis of resonances in the VT ¹H NMR spectra, the activation enthalpy and activation entropy was determined to be 13.0 ± 0.4 kcal mol⁻¹ and 2.7 ± 1.6 cal mol⁻¹ K⁻¹, respectively. The activation entropy close to zero suggests a nondissociative mechanism for the isomerisation. DFT investigation revealed that the isomerisation proceeds through a one step mechanism with a barrier of 11.40 kcal mol⁻¹. The structures of the syn and anti conformers as well as that of the transition state were characterized. Energy decomposition analysis was carried out in order to explore the origins of the stability difference between the syn and anti isomers.     

Computational (DFT) and Experimental (NMR) Study of the Chelation of an Iridium Hyperpolarization Transfer Catalyst by Amino Acids

Non-hydrogenative Para-Hydrogen Induced Hyperpolarization (nhPHIP) is a Nuclear Magnetic Resonance (NMR) hyperpolarization technique which has experimentally been used to analyze complex biological samples containing amino acids using the Ir-IMes hyperpolarization transfer catalyst. A computational study based on Density Function Theory (DFT) was performed on all relevant stereoisomers of [Ir(H)₂(IMes)(AA)(Py)] (with AA=glycine, alanine, valine; Py=pyridine), for which R/S chirality and orientation of the amino acid chelation (C/A) were considered. A total of 30 structures were calculated comprising of 6 stereoisomers for achiral glycine, and 12 stereoisomers for each of the chiral amino acids. The abundances derived from the DFT energies confirmed the trends observed in thermal (non-hyperpolarized) NMR experiments. Additionally, theoretical calculations of electronic (Wiberg bond indices, Natural Bond Orders, Frontier Orbital Analysis), bond dissociation energies, transition states, and activation energies related to interconversion between binding modes, and steric factors (Solid angle) were performed to provide detailed explanations for NMR experimental observations.     

NQR and NMR study of hydrogen bonding interactions in anhydrous and monohydrated guanine cluster model: A computational study

In this paper extensive systematic computational study has been carried out to justify hydrogen bonding interactions and their influence on the oxygen, nitrogen and hydrogen NQR and NMR parameters of the anhydrous and monohydrated guanine crystal structures at two different levels, B3LYP and MP2, using 6-311++G** and D95** basis sets. These theoretical data have been compared with experimental NMR and NQR measurements. For further investigation, results of cluster calculation have been compared with that of a single molecule. Our theoretical NQR and NMR parameters of ¹⁷O, ¹⁵N and ²H atoms of anhydrous and monohydrated guanine exhibited extreme sensitivity to electron distribution around mentioned nuclei caused by cooperative influences of various types of hydrogen bonding interactions. Fortunately, our calculated isotropic shielding values and CS tensors for the ¹⁷O and ¹⁵N nuclei as well as obtained ¹⁴N-NQR parameters are in excellent agreement with experimental data. Therefore, we can undoubtedly conclude that for anhydrous and monohydrated guanine tetrameric clusters including intermolecular interactions, our theoretical estimates are in better agreement with observed experimental values than those in which these interactions have been ignored.     

Chemical reactivity of hypervalent silicon compounds: The local hard and soft acids and bases principle viewpoint

The silicon atom may increase its coordination number to values greater than four, to form pentacoordinated compounds. It has been observed experimentally that, in general, pentacoordinated compounds show greater reactivity than tetracoordinated compounds. In this work, density functional theory is used to calculate the global softness and the condensed softness of the silicon atom for SiH _n F_4−n and SiH _n F _5−n ¹⁻ . The values obtained show that the global and condensed softness are greater in the pentacoordinated compounds than in the tetracoordinated compounds, a result that explains the enhanced reactivity. If the results are analysed through a local version of the hard and soft acids and bases principle, it is possible to suggest that in nucleophilic substitution reactions, soft nucleophiles preferably react with SiH _n F _5−n ¹⁻ , and hard nucleophiles with SiH _n F_4−n .     

Experimental,DFT studies and molecular dynamic simulation on the corrosion inhibition of carbon steel in 1 M HCl by two newly synthesized 8-hydroxyquinoline derivatives

In the present work, two new 8-hydroxyquinoline derivatives namely, 5-(((2-hydroxybenzylidene)amino)methyl) 8-hydroxyquinoline [HBMQ] and 5-(((4-chlorobenzylidene)amino)methyl) 8-hydroxyquinoline [CBMQ] were synthesized and investigated as corrosion inhibitors against the dissolution of carbon steel (C38 steel) in 1 M HCl. These compounds were obtained with high yield, and their structures were characterized by nuclear magnetic resonance spectroscopy (NMR) and elemental analysis. Gravimetric, electrochemical impedance spectroscopy (EIS), potentiodynamic polarization (PDP), and surface morphology analyses utilizing scanning electron microscopy (SEM) with energy dispersive spectroscopy (EDS) were used to quantify inhibitory performance. The adsorption process of inhibitory compounds was then demonstrated using quantum mechanics approaches such as Density Functional Theory (DFT) and Molecular Dynamic Simulation (MD). Based on EIS results, the investigated derivatives effectively inhibit the degradation of C38 steel over the entire concentration range with a maximum efficiency of 91.9% and 88.0% for [CBMQ] and [HBMQ], respectively, at 10^?3 M. In addition, the PDP studies revealed that [HBMQ] and [CBMQ] compounds acted according to a mixed-type mechanism. Moreover, the adsorption mechanism follows the Langmuir isotherm model. The quantum theoretical study by DFT and MD simulation confirmed the experimental results.     

M(CO)4 (M = Mo or W) complexes of 2,6-bis(methylthiomethyl)pyridine (L) and 2,6-bis(p-tolylthiomethyl)pyridine (L): a dynamic NMR study

The hybrid S/N/S donor ligands 2,6-bis(methylthiomethyl)pyridine (L¹) and 2,6-bis(p-tolylthiomethyl)pyridine (L²) react with the [M(CO)₅(THF)] (M = Mo or W) compounds to form complexes of general formula [M(CO)₄L] (M = Mo, L = L²; M = W, L = L¹ or L²), where both L¹ and L² act in a S/N bidentate chelate fashion. In solution, these complexes undergo three fluxional processes, viz. inversion at the coordinated S atom, S¹–S² switching, and combined inversion and S¹–S² switching, leading to an interconversion of the four possible permutational isomers. Energy barriers for all three processes have been evaluated by standard one-dimensional band-shape analysis techniques. The mechanism of the S¹–S² switch is discussed.     

Myers–Saito and Schmittel cyclizations of enyne-(hetero)-1,2,3-trienes: A DFT study on the structure–reactivity relationship

The Myers–Saito (C²–C⁷) cyclization and the alternative Schmittel (C²–C⁶) cyclization of enyne-1,2,3-triene 1R and its hetero analogues 2R–5R were investigated by using pure density functional theory method (BPW91) in connection with the 6-311G(d, p) basis set. It has been shown that heteroatom-containing reactants lower significantly reaction barriers for both cyclization modes and reduce the difference between the barrier of the C²–C⁷ cyclization mode and that of the C²–C⁶ one. The Myers–Saito cyclization of 4R is associated with the smallest reaction barrier and the highest exothermicity. Whereas the Schmittel cyclization of 4R is exothermic, all the others are predicted to be endothermic.     

电场对(4, 0)Zigzag模型单壁碳纳米管的影响

The structural and electronic properties of a (4, 0) zigzag single-walled carbon nanotube (SWCNT) under parallel and transverse electric fields with strengths of 0-1.4×10~(-2) a.u. Were studied using the density functional theory (DFT) B3LYP/6-31G~* method. Results show that the properties of the SWCNT are dependent on the external electric field. The applied external electric field strongly affects the molecular dipole moments. The induced dipole moments increase linearly with increase in the electrical field intensities. This study shows that the application of parallel and transverse electric fields results in changes in the occupied and virtual molecular orbitals (Mos) but the energy gap between the highest occupied MO (HOMO) and the lowest unoccupied MO (LUMO) of this SWCNT is less sensitive to the electric field strength. The electronic spatial extent (ESE) and length of the SWCNT show small changes over the entire range of the applied electric field strengths. The natural bond orbital (NBO) electric charges on the atoms of the SWCNT show that increase in the external electric field strength increases the separation of the center of the positive and negative electric charges of the carbon nanotube.     

A NMR, X-ray, and DFT combined study on the regio-chemistry of nucleophilic addition to platinum(II) coordinated terminal olefins

The series of platinum complexes [PtCl(η²-CH₂CH-C₆H₄-X)(tmeda)](ClO₄) (X = H, 1b; 4-OMe, 1c; 3-OMe, 1d; 4-CF₃, 1e; 3-CF₃, 1f; 3-NO₂, 1g; tmeda = N,N,N′,N′-tetramethyl-1,2-ethanediamine) has been considered. In the styrene complex (1b) both solution (NMR) and solid state (X-ray) data indicate a significant difference in the Pt-C bond lengths (the longer bond being that involving the olefin carbon atom carrying the phenyl ring). Such a difference increases when X is an electron donor group (EDG, 1c) and decreases when X is an electron withdrawing group (EWG, 1d-g). The attack of a nucleophile (MeO⁻) to the substituted carbon (Markovnikov type, M) is by far the most favoured in the case of unsubstituted (1b) or EDG-substituted (1c) styrenes. The presence of an EWG (compounds 1d-g) levels off the probability of M and anti-M type of attack. DFT calculations on 1b,c and 1e were also performed. The NLMO analysis reveals the crucial role of the interaction between the filled π orbital of the olefin and the empty d orbital of platinum; the carbon with greater electron density becoming less susceptible of nucleophilic attack.     

DFT study of electronic structure and geometry of anionic silver clusters (n = 11, 12, 17)

Based on both total energy calculations and comparison of experimental and calculated characteristics of photoelectron spectra (PHES), the structural assignment of clusters and has been made using DFT model with recently developed S2LYP functional. The calculated characteristics of PHES for the assigned structures are in excellent agreement with the experimental ones. The electronic structure, geometry and energetic characteristics of low-lying isomers have also been studied. The calculated geometrical parameters of and clusters as well as the geometries of earlier established clusters have been compared with the geometrical characteristics of anionic sodium clusters. The structures of anionic silver and sodium clusters have been found to be very similar. The difference has been observed only for . Based on similarity of the geometries of silver and sodium clusters as well as on the comparison of calculated and experimental characteristics of PHES, the geometry of cluster has been assigned.