Ba2In2O4(OH)2: Proton sites, disorder and vibrational properties

The structure of Ba₂In₂O₄(OH)₂ is analysed by the explicit full optimization of a large number of possible proton arrangements using periodic density functional theory. It is shown that the experimental assignments in which protons appear to be located at high symmetry positions with unphysical bond lengths do not correspond to minima on the potential energy hypersurface. The apparent sites are averages of a number of possible proton locations involving a set of possible local structural environments in which the internuclear separations are more realistic. Such problems with structural refinements are common where profile refinement programs place the atoms at the average position due to dynamic and/or static disorder. Thus while the calculations support a previous neutron diffraction analysis of the structure in that the average structure contains two different proton sites, they also reveal substantial information about the local environments of the protons. In all optimizations, the protons moved from the average positions suggested in the neutron diffraction study with calculated O–H and OHO distances consistent with those observed in other oxides. The energies of different proton distributions vary significantly so the protons are not randomly distributed. We also present an analysis of the vibrational properties of the O–H bonds. Since the strength of the hydrogen bonds is closely related to the local structural environments of the protons, a range of vibrational frequencies is obtained providing a prediction of the vibrational spectra. In O–HO linkages, O–H stretching modes soften with increasing HO hydrogen bond strength, while the in-plane and out-of-plane bending or libration modes stiffen. Together, our results show how modern theoretical methods can provide a clearer understanding of the structure and dynamics of a complex inorganic material.     

The catalytic effects of various third molecules on reaction channels of weakly bound complex CO2HF systems in the vapor phase

In this investigation, reaction channels of weakly bound complexes CO₂HF, CO₂HFH₂O, CO₂HFNH₃, CO₂HFCH₃OH, CO₂HFNH₂CH₃, CO₂HFNH(CH₃)₂ and CO₂HFN(CH₃)₃ systems were studied at the B3LYP/6-311++G(3df,2pd) level. The conformers of syn-fluoroformic acid or syn-fluoroformic acid plus a third molecule (H₂O, NH₃, CH₃OH, NH₂CH₃, NH(CH₃)₂ or N(CH₃)₃) were found to be more stable than the conformers of the related anti-fluoroformic acid or anti-fluoroformic acid plus a third molecule (H₂O, NH₃, CH₃OH, NH₂CH₃, NH(CH₃)₂ or N(CH₃)₃). However, the weakly bound complexes were found to be more stable than either the related syn- and anti- type fluoroformic acid or the acid plus third molecule (H₂O, NH₃, CH₃OH, NH₂CH₃, NH(CH₃)₂ or N(CH₃)₃) conformers. They decomposed into CO₂+HF, CO₂+H₃OF, CO₂+NH₄F, CO₂+(CH₃)OH₂F, CO₂+NH₃(CH₃)F, CO₂+NH₂(CH₃)₂F, or CO₂+NH(CH₃)₃F combined molecular systems. The weakly bound complexes have seven reaction channels, each of which includes weakly bound complexes and their related systems. Moreover, each reaction channel includes two transition state structures. The transition state between the weakly bound complex and anti-fluoroformic acid type structure (T₁₃) is significantly higher than that of internal rotation (T₂₃) between the syn- and anti-FCO₂H (or FCO₂HH₂O, FCO₂HNH₃, FCO₂HCH₃OH, FCO₂HNH₂CH₃, FCO₂HNH(CH₃)₂, or FCO₂HN(CH₃)₃) structures. However, adding the third molecule H₂O, NH₃, CH₃OH, NH₂CH₃, NH(CH₃)₂ or N(CH₃)₃ can significantly reduce the activation energy of T₁₃. The catalytic strengths of the third molecules are predicted to follow the order H₂O<NH₃<CH₃OH<.NH₂CH₃<NH(CH₃)₂<N(CH₃)₃.     

Novel M(II)–Hg(II) coordination polymers generated from metal-containing building blocks M(2-pyrazinecarboxylate)2 · (H2O)2 (M=Cu, Ni, Co) and HgCl2

A new class of M(II)–Hg(II) (M=Cu(II), Co(II), Ni(II)) mixed-metal coordination polymers, Cu(2-pyrazinecarboxylate)₂HgCl₂ (4), [Co(2-pyrazinecarboxylate)₂(HgCl₂)₂] · 0.61H₂O (5) and [Ni(2-pyrazinecarboxylate)₂(HgCl₂)₂] · 0.77H₂O (6), have been prepared by self assembly of metal-containing building blocks, M(2-pyrazinecarboxylate)₂ · (H₂O)₂(M=Cu(II), Co(II), Ni(II)), with HgCl₂. Compounds 4–6 were characterized fully by IR, elemental analysis and single crystal X-ray diffraction. Compound 4 crystallized in the monoclinic space group C2/c, with a=17.916(5) Å, b=7.223(2) Å, c=13.335(4) Å, β=128.726(3)°, V=1346.2(6) ų, Z=4. It contains alternating Hg(II) and Cu(II) metal centers that are cross-linked by 2-pyrazinecarboxylate spacers and chlorine co-ligands to generate a unique three-dimensional Hg(II)–Cu(II) mixed metal framework. Compound 5 crystallized in the triclinic space group P , with a=6.3879(7) Å, b=6.6626(8) Å, c=13.2286(15) Å, α=96.339(2)°, β=91.590(2)°, γ=113.462(2)°, V=511.71(10) ų, Z=1. Compound 6 also crystallized in the triclinic space group P , with a=6.3543(8) Å, b=6.6194(8) Å, c=13.2801(16) Å, α=96.449(2)°, β=92.263(2)°, γ=113.541(2)°, V=506.67(11) ų, Z=1. Compounds 5 and 6 are isostructural and in the solid state the Hg(II)M(II)Hg(II) units are connected by Hg₂Cl₂ linkages to produce a novel M(II)–Hg(II) (M=Co(II), Ni(II)) zigzag mixed-metal chain, in which a new type of M–M′–M′–M array was observed. The metal containing building blocks, M(2-pyrazinecarboxylate)₂ · (H₂O)₂ (M=Cu(II), Co(II), Ni(II)), exhibit different connectivities to HgCl₂ depending on the metal cation contained within them.     

Vibrational satellite of Na(3d ← 3s) dipole-forbidden transition in Na/CF4 mixture

Excitation spectra of Na fluorescence in mixtures with CF₄ display a new band shifted by the energy of one-vibrational quantum of the IR active ν₃-mode of CF₄ (1281 cm⁻¹) from Na 3d states. This band is attributed to a Na(3s)CF₄(ν₃ = 0) → Na(3d)CF₄(ν₃ = 1) transition and its intensity is explained by coupling with Na(4p)CF₄(v₃ = 0) resonance state which lies  180 cm⁻¹ below in energy. An analogous satellite of the Na 6p state combined with the same vibration and lying close to the Na 7p state is reported and discussed.     

(1,4-dabH)2MnSnS4: The first thiostannate with integrated Mn ions in an anionic chain structure

The new thiostannate (1,4-dabH)₂MnSnS₄ (1,4-dab = 1,4-diaminobutane) was synthesized under solvothermal conditions. The compound crystallizes in the non-centrosymmetric space group Fdd2 with a = 22.8124(15) Å, b = 24.7887(16) Å, c = 6.4153(6) Å, Z = 8, and V = 3627.8(5) Å³. The structure consists of one-dimensional straight anionic chains composed of alternating SnS₄ and MnS₄ tetrahedra sharing common edges. The chains are directed along [001] and are surrounded by the organic cations which form undulated chains along [100] by strong intermolecular N–HN hydrogen bonding interactions. Several SH contacts suggest weak interactions between the anionic chains and the cations. The band gap amounts to 2.9 eV indicating that the compound is a photo-conductor. The compound is stable up to about 190 °C and decomposes in two distinct steps above this temperature.     

Molybdenum(VI) network polymers based on anion–π interaction and hydrogen bonding: Synthesis, crystal structures and oxidation catalytic application

A crystallographic investigation of anion–π interactions and hydrogen bonds on the preferred structural motifs of molybdenum(VI) complexes has been carried out. Two molybdenum(VI) network polymers MoO₂F₄·(Hinca)₂ (1) and MoO₂F₃(H₂O)·(Hinpa) (2), where inca = isonicotinamide and inpa = isonipecotamide, have been synthesized, crystallographically characterized and successfully applied to alcohol oxidation reaction. Complex 1 crystallizes in the monoclinic space C2/c: a = 16.832(3) Å, b = 8.8189(15) Å, c = 12.568(2) Å, β = 118.929(3)°, V = 1560.1(5) Å³, Z = 4. Complex 2 crystallizes in the triclinic space P-1: a = 5.459(2) Å, b = 9.189(4) Å, c = 12.204(5) Å, α = 71.341(6)°, β = 81.712(7)°, γ = 77.705(7)°, V = 564.8(4) Å³, Z = 2. Complex 1 consists of hydrogen bonding and anion–π interactions, both of which are considered as important factors for controlling the geometric features and packing characteristics of the crystal structure. The geometry of the sandwich complex of [MoO₂F₄]²⁻ with two pyridine rings indicates that the anion–π interaction is an additive and provides a base for the design and synthesis of new complexes. For complex 2, the anions and the protonated inpa ligands form a 2D supramolecular network by four different types of hydrogen contacts (N–HF, N–HO, O–HF and O–HO). The catalytic ability of complexes 1 and 2 has also been evaluated by applying them to the oxidation of benzyl alcohol with TBHP as oxidant.     

Capture of aromatic carboxylate anion through second sphere coordination: Topological complementarity of [cis-Co(en)2(N3)2] and ions

[cis-Co(en)₂(N₃)₂]C₇H₃ClNO₄·1.25H₂O (Cocnb) was synthesised and detailed packing analyses were undertaken to delineate the topological complementarity of [cis-Co(en)₂(N₃)₂]⁺ and a 2-chloro-4-nitro benzoate anion (cnb) for second sphere coordination in the crystal lattice. The complex was completely characterised by elemental analyses, spectroscopic studies (IR, UV/visible, ¹H and ¹³C NMR). The compound crystallizes in the monoclinic (space group C2/c) with a = 21.9843(18), b = 8.7959(7), c = 23.0121(18) Å, β = 116.426(1)°, V = 3984.9(6) Å³, and Z = 8. In the crystal lattice, discrete ions of [cis-Co(en)₂(N₃)₂]⁺ and cnb are arranged in A–B–A–B pattern (in both a and c directions of the lattice) forming columns of anions and cations. The anionic columns are π stacked and are involved in extensive hydrogen bonding interaction. It appears that the topological feature of [cis-Co(en)₂(N₃)₂]⁺ is conducive for generating second sphere interactions with aromatic carboxylates. This strategy may be used as a viable method for the capture of aromatic carboxylate anions.     

Unimolecular chemistry of metastable dimethyl isophthalate radical cations

The MS/MS spectrum of the metastable molecular ions of dimethyl isophthalate 1 differs from that of the isomeric dimethyl terephthalate 2 by the observation of, inter alia, a quite intense loss of C,H₂,O ascribed to formaldehyde. Results obtained using a combination of mass spectrometry techniques suggest that this process could consist of an isomerization reaction of the molecular ion into an ion–neutral complex (INC) linking a benzoyl radical and neutral formaldehyde to a proton [ArCOHOCH₂]⁺. Within the complex, a proton transfer catalyzed by formaldehyde occurs resulting in the production of an ionized cyclohexadienylidene methanone (ketene) structure.     

C–HPt(II) interaction-controlled self-assembly and photophysics of chiral bis(pyrrol-2-ylmethyleneamino)cyclohexane platinum(II) complexes

Reaction of (R,R)-(−)- and (S,S)-(+)-1,2-bis(pyrrol-2-ylmethyleneamino)cyclohexane with K₂PtCl₄ afforded chiral, neutral platinum(II) Schiff base complexes of (R,R)-PtL and (S,S)-PtL with high yields. The rare C–HPt(II) intermolecular interaction was found to show considerable strength and directionality for controlling M and P helical supramolecular architectures of (R,R)-PtL and (S,S)-PtL, respectively, in crystal lattices. More importantly, the open square-planar geometry of platinum(II) complexes allows axial C–HPt(II) interaction, resulting in the ³(ππ^*) excited state with some mixing of the Pt(II) metal character observed both in concentrated solutions and in the solid state at room temperature.     

Nonadiabatic dissociation dynamics of ClHD van der Waals complex initiated by electron detachment of Cl–HD

Nuclear dynamics following the electron detachment of the Cl⁻–HD anion is investigated by a time-dependent wave packet propagation approach. Photodetachment of Cl⁻–HD promotes it to the van der Waals well region of the reactive ClHD potential energy surface. The latter is a manifold of three electronic states coupled by the electronic and (relativistic) spin-orbit coupling. Among the three surfaces, the electronic ground one is of ²Σ_1/2 type and yields products in their electronic ground state. The remaining two, ²Π_3/2 and ²Π_1/2, on the other hand, yield products in their excited electronic states. However, these two can yield products in their electronic ground state via nonadiabatic transitions to the ²Σ_1/2 state. The channel specific, HCl + D or DCl + H or Cl + HD, dissociation probabilities on this latter state are calculated both in the uncoupled and coupled surface situations. Separate initial transitions (via, photodetachment) to the ²Σ_1/2, ²Π_3/2 and ²Π_1/2 adiabatic electronic states of ClHD are considered in order to elucidate the nonadiabatic coupling effects on this important class of chemical reactions initiated by an electron detachment.     

Weak hydrogen-, halogen- and stacking ππ bonding in crystalline 5-chloro-1-indanone. An analysis by using X-ray diffraction, vibrational spectroscopy and theoretical methods

Intermolecular forces of C–HO, C–Hπ, COCl and ππ types are present in the stable triclinic crystal structure of 5-chloro-1-indanone. They are analysed from a geometrical point of view supported in some extent by the analysis of the vibrational spectrum of the titled compound. Moreover, the molecular structure of the isolated species is calculated by using ab initio as well as density functional theory (DFT) methods together an assortment of basis sets. In order to obtain some information about the influence of intermolecular forces on the molecular structure, the calculated geometries of a free molecule were compared with the experimental solid phase geometry determined by X-ray crystallography.An analysis and assignment of the vibrational spectrum of the 5-chloro-1-indanone is accomplished by using IR and Raman experimental data along with Pulay et al.’s scaled quantum mechanical force field (SQM) methodology starting from the theoretical B3LYP/6-31G(d) and BLYP/6-31G(d) force fields under C_s symmetry.     

FT-Raman and high-pressure infrared spectroscopic studies of dicalcium phosphate dihydrate (CaHPO4·2H2O) and anhydrous dicalcium phosphate (CaHPO4)

The FT-Raman spectra and the pressure dependence of the infrared spectra of the hydrated and anhydrous forms of dicalcium phosphate, CaHPO₄ · 2H₂O and CaHPO₄, have been studied. The hydrated salt exhibits a phase transition at 21 kbar (1.0 kbar=0.1 Gpa) but no high pressure transition was observed for anhydrous dicalcium phosphate. The O–H stretching frequencies of the water molecules in CaHPO₄·2H₂O all showed negative pressure dependences and correlate with the OO distances. The PO–H stretch increased with increasing pressure, indicating a strong hydrogen bond. The frequencies associated with the phosphate ion showed a normal pressure dependence.     

Competition between non-classical and classical hydrogen bonded sites in [BH3CN]: Spectral, energetic, structural and electronic features

Interaction of the salt (Ph₃PNPPh₃)BH₃CN with the various OH and NH proton donors in low polar media was studied by variable temperature (200–290 K) IR spectroscopy and theoretically by DFT calculations. The formation of two types of complexes containing non-classical dihydrogen bond to the hydride hydrogen (DHB) and classical hydrogen bond (HB) to nitrogen lone pair was shown in solution. The 1:1 complexes of both types (XHH and XHN) coexist in the presence of equimolar amount of proton donor. The addition of excess XH-acid leads to the increase of the classical HB content and appearance of the 1:2 complexes, where two basic sites work simultaneously. The structure, spectral characteristics, energy and electron redistribution were studied by DFT (B3LYP) method. The comparison DHB parameters of [BH₃CN]⁻ with those of the unsubstituted analogue [BH₄]⁻ allowed analyzing the electronic effects of the CN group on the basic properties of boron hydride moiety. The electronic influence of the BH₃ group on CN⁻HX hydrogen bond was also established by comparison with the corresponding classical HB to the CN⁻ anion.     

H NMR Dynamic study of thermal Z/E isomerization of 5-substituted 2-alkylidene-4-oxothiazolidine derivatives: Barriers to rotation about CC bond

The rotational barriers between the configurational isomers of two structurally related push–pull 4-oxothiazolidines, differing in the number of exocyclic CC bonds, have been determined by dynamic ¹H NMR spectroscopy. The equilibrium mixture of (5-ethoxycarbonylmethyl-4-oxothiazolidin-2-ylidene)-1-phenylethanone (1a) in CDCl₃ at room temperature to 333 K consists of the E- and Z-isomers which are separated by an energy barrier ΔG^# 98.5 kJ/mol (at 298 K). The variable-temperature ¹H NMR data for the isomerization of ethyl (5-ethoxycarbonylmethylidene-4-oxothiazolidin-2-ylidene)ethanoate (2b) in DMSO-d₆, possessing the two exocyclic CC bonds at the C(2)- and C(5)-positions, indicate that the rotational barrier ΔG^# separating the (2E,5Z)-2b and (2Z,5Z)-2b isomers is 100.2 kJ/mol (at 298 K). In a polar solvent-dependent equilibrium the major (2Z,5Z)-form (>90%) is stabilized by the intermolecular resonance-assisted hydrogen bonding and strong 1,5-type S · · · O interactions within the SCCCO entity. The ¹³C NMR Δδ_C(2)C(2′) values, ranging from 58 to 69 ppm in 1a–d and 49-58 ppm in 2a–d, correlate with the degree of the push-pull character of the exocyclic C(2)C(2′) bond, which increases with the electron withdrawing ability of the substituents at the vinylic C(2′) position in the following order: COPh COEt > CONHPh > CONHCH₂CH₂Ph. The decrease of the Δδ_C(2)C(2′) values in 2a–d has been discussed for the first time in terms of an estimation of the electron donor capacity of the S fragment on the polarization of the CC bonds.     

Interligand interactions involved in the molecular recognition between copper(II) complexes and adenine or related purines

The available crystal structure information in the CSD database on ternary species prepared by the reaction of diverse copper(II) complexes (CuL) and purine, adenine and guanine or related purine derivatives is considered in order to deepen the intra-molecular interligand interactions affecting the molecular recognition patterns of the ‘metal complex + purine nucleobase’ and closely related systems. The degree of protonation and the possibilities of different tautomeric forms in the purine-like moieties are taken into account. The main conclusion is a general trend to form a CuN(purine-like) coordination bond which can be reinforced by an intra-molecular interligand H-bonding interaction. NH(purines)A (O or Cl acceptor) or NH(amino ligand L)O6(oxo-purines) are commonly observed. In addition, selected examples revealed that the presence of a variety of non-coordinating groups in L or in the purine-like nucleobases can significantly influence the structurally observed molecular recognition pattern. Moreover, examples are known where binuclear cores of the types Cu^II₂(μ₂-N3,N9-adeninate)₄(aqua)₂ or Cu^I₂(μ₂-N3,N9-adeninate)₂(aqua)₂ recognise CuL chelates by means of the expectable pattern (CuN7 coordination bond + N6HO(L) interaction).     

Influence of hydration on the protomeric tautomerism in selenium analogue of methimazole: A computational chemistry study

Hydrogen bond assisted proton transfer reactions were investigated in 3-methyl-1H-imidazole-2(3H)-selone (MSeI) and 1H-imidazole-2(3H)-selone (SeI) at B3LYP/6-311++G(2d,2p) level of theory. The B3LYP results predict that the direct proton transfer process in MSeI and SeI is more difficult than the water-assisted one. The results also show that the selone complexes are more stable than corresponding selenol ones. Interaction energies for a single NHSe hydrogen bond in dimers MSeI and SeI are −31.3 and −32.7 kJ/mol, respectively. ZPE-corrected binding energies in the self-association complexes of the MSeI and SeI are greater than the water-associated complexes. The small negative value of H(r) obtained by AIM analysis at B3LYP/6-311++G(2d,2p) level reveals some contribution of sharing interaction (partially covalent) to the SeHN bond in dimers of the MSeI and SeI. AIM data also reveal the partially covalent nature of SeH6 interaction and electrostatic nature of OH5 interaction in water-associated complexes. Results of charge analysis show that the selenium analogue of the methimazole is more nucleophilic than the methimazole. Our results confirm that the selenium analogue of methimazole can exist as a zwitterionic form.     

The phase transition behaviors of Li1−xMn0.5Fe0.5PO4 during lithium extraction studied by in situ X-ray absorption and diffraction techniques

How the structural changes take place in LiMn_yFe_1−yPO₄-type cathode materials during lithium extraction/insertion is an important issue, especially on if they go through the single-phase reaction (i.e., solid solution reaction) or the two-phase reaction regions. Here we report the studies on the phase transition behaviors of a carbon coated Li_1−xMn_0.5Fe_0.5PO₄ (CLi₁₋xMn_0.5Fe0_.5PO₄, 0.0  x  1.0) sample during the first charge using in situ X-ray absorption spectroscopy (XAS) and X-ray diffraction (XRD) techniques. The combination of in situ XAS and XRD results clearly identify two two-phase coexistence regions at two voltage plateaus of 3.6 (Fe²⁺/Fe³⁺) and 4.2 V (Mn²⁺/Mn³⁺) and a narrow intermediate region which proceeds via single-phase reaction in between two two-phase regions. In addition, simultaneous redox reactions of Fe²⁺/Fe³⁺ and Mn²⁺/Mn³⁺ in the narrow single-phase region are reported and discussed for the first time.     

Crystal structure of olanzapine and its solvates. Part 3. Two and three-component solvates with water, ethanol, butan-2-ol and dichloromethane

Crystalline solvates of olanzapine (1), 2-methyl-4-(4-methyl-1-piperazinyl)-10H-thieno[2,3-b][1,5]benzodiazepine, have been characterized by an X-ray analysis and thermal (DSC) data. Crystallization of 1 from ethanol gives a solid containing both water and ethanol molecules; the solvate 1 · H₂O · EtOH (2:2:1) is monoclinic with the space group P2₁/c and the unit-cell volume V = 3752.8(12) Å³. Butan-2-ol forms with 1 solvate which is also a three-component phase, 1 · H₂O · BuOH, but its stoichiometry is different (1:1:1). The space group for this crystal is P2₁/c and the unit-cell volume V = 2216.5(7) Å³. Crystalline olanzapine dichloromethane solvate (2:1), 1 · CH₂Cl₂, is triclinic with the space group .The characteristic feature of all crystal structures is presence of a pair of olanzapine molecules which form dimer stabilized by multiple weak C–Hπ interactions between the N-methylpiperazine fragment and the phenyl / thiophene systems. Theoretical calculations have been performed indicating that the total C–Hπ binding energy is about 8 kcal mol⁻¹. In the crystal structure, the self-assembled olanzapine molecular dimers are arranged into parallel crystal planes. Packing of the layers proceeds in two ways in which structural motives are replicated by (i) perpendicular translation forming columns, and (ii) rotation around the twofold screw axis (parallel to the layer).     

Molecular DFT structure and packing effect of thiodipropionic and dithiodiglycolic acids and salts

Molecular and periodic DFT structure calculations of thiodipropionic and dithiodiglycolic acids, S_n[(CH₂)(COOR)]₂ (n = 1,2, R = H, Na), were performed. Computed structures were analyzed and compared to the experimental data (a C_s conformation is favored in solution than C₂ in solid state). Four close and low-energy optimized conformations were analyzed: C_2v, C₂, C_s and C₁. Small changes in the conformation stability (ΔG) and symmetry group were observed in polar medium. Periodic DFT-GGA approaches have been performed to determine the importance of weak interaction upon the crystal structure of the thiodipropionic acid, e.g., S–H and/or O–H hydrogen bonding. More SH and OH dispersed bands were observed in the optimized structure. Using a full analysis of the DOS of O–H or S–H bonding contributions, a notable interlayer bonding in the parent structure was revealed. Therefore, the presence of such weak interaction ONa⁺ or OH may thus change the point group symmetry of the crystal upon packing effect.     

Syntheses, crystal structures, spectral and thermal analysis and biological activities of copper(II)-pyridine-2,5-dicarboxylate complexes with 4-methylimidazole, imidazole, and 3,4-dimethylpyridine

In this study, three novel Cu(II)-pyridine-2,5-dicarboxylate (pydc) complexes with 4-methylimidazole (4-Meim), [Cu(pydc)(H₂O)(4-Meim)₂]·H₂O (1), imidazole (im), {[Cu(μ-pydc)(im)₂]·2H₂O}_n (2), and 3,4-dimethylpyridine (dmpy), [Cu(μ-pydc)(H₂O)(dmpy)]_n (3) have been synthesized. Elemental and thermal analyses, magnetic susceptibilities, IR and UV/vis spectroscopic studies have been performed to characterize the complexes. The molecular structures of mononuclear (1) and polynuclear (2 and 3) complexes have been determined by the single crystal X-ray diffraction technique. In 1 and 2, Cu(II) ions have distorted square planer geometry, while 3 has distorted octahedral coordination. The pyridine-2,5-dicarboxylate exhibits three different coordination modes namely bidentate (1), tridentate (2) and tetradentate (3). The complex 1 is further constructed to form three-dimensional framework by hydrogen bonding, C–Hπ and ππ stacking interactions. The adjacent chains of 2 and 3 are then mutually linked via hydrogen bonding, ππ and C–Hπ interactions, which are further assembled to form three-dimensional framework. 1 exhibits the magnetic moment value of 1.70 BM, which corresponds to one of the unpaired electron, while the polynuclear complexes 2 and 3 exhibit 1.58 and 1.46 BM, which is lower than the spin only value for one unpaired electron, indicates to antiferromagnetic effect. The first thermal decomposition process of all the complexes is endothermic dehydration. This stage is followed by partial (or complete) decomposition of the neutral and pydc ligands. In the later stage, the remained organic residue exothermically burns. The final decomposition products which identified by IR spectroscopy were the CuO.