Time-resolved measurements of the photolysis and recombination of adenosylcobalamin bound to glutamate mutase

Femtosecond to nanosecond transient absorption spectroscopy is used to investigate the photolysis of 5'-deoxyadenosylcobalamin (coenzyme B12, AdoCbl) bound to glutamate mutase. The photochemistry of AdoCbl is found to be inherently dependent upon the environment of the cofactor. Excitation of AdoCbl bound to glutamate mutase results in formation of a metal-to-ligand charge transfer intermediate state which decays to form cob(II)alamin with a time constant of 105 ps. This observation is in contrast to earlier measurements in water where the photohomolysis proceeds through an intermediate state in which the axial dimethylbenzimidazole ligand appears to have dissociated, and measurements in ethylene glycol where prompt bond homolysis is observed (Yoder, L. M.; Cole, A. G.; Walker, L. A., II; Sension, R. J. J. Phys. Chem. B 2001, 105, 12180-12188). The quantum yield for formation of stable radical pairs in the enzyme is found to be phi = 0.05 +/- 0.03, and the resulting intrinsic rate constants for geminate recombination and "cage escape" are 1.0 +/- 0.1 and 0.05 +/- 0.03 ns(-1), respectively. The rate constant for geminate recombination is 30% less than that observed for AdoCbl in water or ethylene glycol. This reduction is insufficient to account for the 10(12)-fold increase in the homolysis rate observed when substrate is bound to the protein. Finally, the protein provides a cage to prevent diffusive loss of the adenosyl radical; however, the ultimate yield for long-lived radicals is determined by the evolution from a singlet to a triplet radical pair as proposed for AdoCbl in ethylene glycol.     

The Origin of Magnetic Field Dependent Recombination in Alkylcobalamin Radical Pairs

Magnetic field effect studies of alkylcobalamin photolysis provide evidence for the formation of a reactive radical pair that is born in the singlet spin state. The radical pair recombination process that is responsible for the magnetic field dependence of the continuous-wave (CW) quantum yield is limited to the diffusive radical pair. Although the geminate radical pair of adenosylcob(III)alamin also undergoes magnetic field dependent recombination (A. M. Chagovetz and C. B. Grissom, J. Am. Chem. Soc. 115, 12152–12157, 1993), this process does not account for the magnetic field dependence of the CW quantum yield that is only observed in viscous solvents. Glycerol and ethylene glycol increase the microviscosity of the solution and thereby increase the lifetime of the spin-correlated diffusive radical pair. This enables magnetic field dependent recombination among spin-correlated diffusive radical pairs in the solvent cage. Magnetic field dependent recombination is not observed in the presence of nonviscosigenic alcohols such as isopropanol, thereby indicating the importance of the increased microviscosity of the medium. Paramagnetic radical scavengers that trap alkyl radicals that escape the solvent cage do not diminish the magnetic field effect on the CW quantum yield, thereby ruling out radical pair recombination among randomly diffusing radical pairs, as well as excluding the involvement of solvent-derived radicals. Magnetic field dependent recombination among alkylcobalamin radical pairs has been simulated by a semiclassical model of radical pair dynamics and recombination. These calculations support the existence of a singlet radical pair precursor.     

Time-resolved spectroscopic studies of B(12) coenzymes: a comparison of the primary photolysis mechanism in methyl-, ethyl-, n-propyl-, and 5'-deoxyadenosylcobalamin.

An ultrafast transient absorption study of the primary photolysis of ethyl- and n-propylcobalamin in water is presented. Data have been obtained for two distinct excitation wavelengths, 400 nm at the edge of the UV gamma-band absorption, and 520 nm in the strong visible alphabeta-band absorption. These data are compared with results reported earlier for the B(12) coenzymes, methyl- and adenosylcobalamin. The data obtained for ethylcobalamin and n-propylcobalamin following excitation at 400 nm demonstrate the formation of one major photoproduct on a picosecond time scale. This photoproduct is spectroscopically identifiable as a cob(II)alamin species. Excitation of methyl-, ethyl-, and n-propylcobalamin at 520 nm in the low-lying alphabeta absorption band results in bond homolysis proceeding via a bound cob(III)alamin MLCT state. For all of the cobalamins studied here competition between geminate recombination of caged radical pairs and cage escape occurs on a time scale of 500 to 700 ps. The rate constants for geminate recombination in aqueous solution fall within a factor of 2 between 0.76 and 1.4 ns(-1). Intrinsic cage escape occurs on time scales ranging from 相似文献   

Femtosecond pump-probe transient absorption study of the photolysis of [Cp'Mo(CO)3]2 (Cp' = eta5-C5H4CH3): role of translational and rotational diffusion in the radical cage effect

Femtosecond pump-probe studies of the photodissociation and subsequent radical cage pair recombination dynamics of the organometallic dimer [Cp'Mo(CO)3]2 (Cp' = eta5-C5H4CH3) are reported. The dynamics following photodissociation were studied in numerous noncoordinating hydrocarbon solvents. The results indicate that primary geminate recombination occurs on an ultrafast time scale (tau approximately 5 ps) and the efficiency of cage escape is inversely proportional to solvent viscosity. Investigation of the time-dependent anisotropy in this system allowed for an estimate of the rotational correlation time of the radical fragments (tau approximately 5-25 ps). Comparison of the rates of rotational motion with the population kinetics shows that the primary solvent cage dynamics and recombination efficiency are controlled by radical diffusion and not by radical rotation.     

ANTHRALIN-DERIVED TRANSIENTS—II. FORMATION OF THE RADICAL BY SPONTANEOUS FRAGMENTATION OF BOTH SINGLET AND TRIPLET STATES OF THE 10,10''-DEHYDRODIMER: RADICAL PAIR MULTIPLICITY EFFECTS

The singlet and triplet states of the anthralin (1,8-dihydroxy-9-anthrone) dehydrodimer have been produced selectively in benzene via pulsed laser excitation and pulse radiolysis respectively. The lifetime of S1 is less than or equal to 30 ps, that of T1 short but unspecified. Both states fragment spontaneously to yield a pair of anthralin radicals. The singlet radical pair predominantly undergoes geminate recombination within the solvent cage. In contrast, the corresponding triplet radical pair undergoes essentially exclusive cage escape to give the anthralin free radical (lambda max 370, 490 and 720 nm) which recombines under normal diffusive conditions. Both recombination processes lead, at least in part, to one or more species which have been assigned as tautomeric forms of the original dimer. The anthralin free radical in benzene is insensitive to the vitamin E model 6-hydroxy-2,2,5,7,8-pentamethylchroman and reacts only slowly with oxygen.     

Time-resolved spectroscopic study of the reaction Cl + n-C5H12 --> HCl + C5H11 in solution

We study the hydrogen abstraction reaction from pentane by chlorine radicals using four different experimental approaches. We use two different solvents (CH2Cl2 and CCl4) and two different chlorine atom sources (photodissociation of dissolved Cl2 and two-photon photolysis of the solvent) to investigate their effects on the recombination and reactivity of the chlorine radical. All four experimental schemes involve direct probing of the transient chlorine population via a charge transfer transition with a solvent molecule. In one of the four approaches, photolysis of Cl2 in dichloromethane, we also monitor the nascent reaction products (HCl) by transient vibrational spectroscopy. Probing both the reactants and the products provides a comprehensive view of this bimolecular reaction in solution. Between one-third and two-thirds of the chlorine radicals that initially escape the solvent cage undergo diffusive geminate recombination with their partner radical (either another chlorine atom or the solvent radical). The rest react with pentane with the bimolecular rate constants k(bi) = (9.5 +/- 0.7) x 10(9) M(-1) s(-1) in CH2Cl2 and k(bi) = (7.4 +/- 2) x 10(9) M(-1) s(-1) in CCl4. The recombination yield phi(rec) depends on both the chlorine atom precursor and the solvent and is larger in the more viscous carbon tetrachloride solutions. The bimolecular reaction rate k(bi) depends only on the solvent and is consistent with a nearly diffusion-limited reaction.     

Synthesis and photochemistry of a new class of photocleavable protein cross-linking reagents

A new series of photocleavable protein cross-linking reagents based on bis(maleimide) derivatives of diaryl disulfides have been synthesised. They have been functionalised with cysteine and transient absorption spectra for the photolysis reaction have been recorded by using the pump-probe technique with a time resolution of 100 femtoseconds. Photolysis of the disulfide bond yields the corresponding thiyl radicals in less than a picosecond. There is a significant amount of geminate recombination, but some of the radicals escape the solvent cage and the quantum yield for photocleavage is 30 % in water.     

Mechanistic investigation of a novel vitamin B(12)-catalyzed carbon [bond] carbon bond forming reaction, the reductive dimerization of arylalkenes

In the presence of catalytic vitamin B(12) and a reducing agent such as Ti(III)citrate or Zn, arylalkenes are dimerized with unusual regioselectivity forming a carbon [bond] carbon bond between the benzylic carbons of each coupling partner. Dimerization products were obtained in good to excellent yields for mono- and 1,1-disubstituted alkenes. Dienes containing one aryl alkene underwent intramolecular cyclization in good yields. However, 1,2-disubstituted and trisubstituted alkenes were unreactive. Mechanistic investigations using radical traps suggest the involvement of benzylic radicals, and the lack of diastereoselectivity in the product distribution is consistent with dimerization of two such reactive intermediates. A strong reducing agent is required for the reaction and fulfills two roles. It returns the Co(II) form of the catalyst generated after the reaction to the active Co(I) state, and by removing Co(II) it also prevents the nonproductive recombination of alkyl radicals with cob(II)alamin. The mechanism of the formation of benzylic radicals from arylalkenes and cob(I)alamin poses an interesting problem. The results with a one-electron transfer probe indicate that radical generation is not likely to involve an electron transfer. Several alternative mechanisms are discussed.     

Photoinduced electron transfer and geminate recombination for photoexcited acceptors in a pure donor solvent

Photoinduced electron transfer and geminate recombination are studied for the systems rhodamine 3B (R3B(+)) and rhodamine 6G (R6G(+)), which are cations, in neat neutral N,N-dimethylaniline (DMA). Following photoexcitation of R3B(+) or R6G(+) (abbreviated as R(+)), an electron is transferred from DMA to give the neutral radical R and the cation DMA(+). Because the DMA hole acceptor is the neat solvent, the forward transfer rate is very large, approximately 5x10(12) s(-1). The forward transfer is followed by geminate recombination, which displays a long-lived component suggesting several percent of the radicals escape geminate recombination. Spectrally resolved pump-probe experiments are used in which the probe is a "white" light continuum, and the full time-dependent spectrum is recorded with a spectrometer/charge-coupled device. Observations of stimulated emission (excited state decay-forward electron transfer), the R neutral radical spectrum, and the DMA(+) radical cation spectrum as well as the ground-state bleach recovery (geminate recombination) make it possible to unambiguously follow the electron transfer kinetics. Theoretical modeling shows that the long-lived component can be explained without invoking hole hopping or spin-forbidden transitions.     

Recombination of Lophyl Radicals in Pyrrolidinium‐Based Ionic Liquids

The recombination of photolytically generated lophyl radicals has been investigated by UV/Vis spectroscopy in 1‐alkyl‐1‐methylpyrrolidinium bis(trifluoromethylsulfonyl)imides (NTf₂) in comparison with 1‐butyl‐3‐methylimidazolium NTf₂, dimethyl sulfoxide, and triacetin. The 1‐alkyl‐1‐methylpyrrolidinium‐based ionic liquids contain an alkyl substituent varying between butyl and decyl groups. Optically pure ionic liquids are used in these studies. Temperature‐dependent investigation of lophyl radical recombination shows an increase in the radical recombination rate with increasing temperature in each solvent, which is caused by decreasing viscosity with increasing temperature. Furthermore, the viscosity of the 1‐alkyl‐1‐methylpyrrolidinium NTf₂ increases nearly linearly within the row of these ionic liquids. In contrast, the recombination of the photolytically generated lophyl radicals is significantly faster in the ionic liquids than in the traditional organic solvents under investigation. Moreover, the recombination rate increases with the length of the alkyl chain bound at the cation of the ionic liquid at a given temperature. This may be caused by an increase in the extent of lophyl radical recombination within the solvent cage. Solvent cage effects dominate in the case of lophyl radical recombination in ionic liquids bearing a long alkyl chain or if the temperature is near the melting temperature of the ionic liquid. The positive value of the activation entropy supports this hypothesis. The results obtained are important for discussion of bimolecular radical reactions in ionic liquids.     

Photoinduced electron transfer in naphthalimide-pyridine systems: effect of proton transfer on charge recombination efficiencies

We studied the effect of proton-coupled electron transfer on lifetimes of the charge-separated radicals produced upon light irradiation of the thiomethyl-naphthalimide donor SMe-NI-H in the presence of nitro-cyano-pyridine acceptor (NO(2)-CN-PYR). The dynamics of electron and proton transfer were studied using femtosecond pump-probe spectroscopy in the UV/vis range. We find that the photoinduced electron transfer between excited SMe-NI-H and NO(2)-CN-PYR occurs with a rate of 1.1 × 10(9) s(-1) to produce radical ions SMe-NI-H(?+) and NO(2)-CN-PYR(?-). These initially produced radical ions in a solvent cage do not undergo a proton transfer, possibly due to unfavorable geometry between N-H proton of the naphthalimide and aromatic N-atom of the pyridine. Some of the radical ions in the solvent cage recombine with a rate of 2.3 × 10(10) s(-1), while some escape the solvent cage and recombine at a lower rate (k = 4.27 × 10(8) s(-1)). The radical ions that escape the solvent cage undergo proton transfer to produce neutral radicals SMe-NI(?) and NO(2)-CN-PYR-H(?). Because neutral radicals are not attracted to each other by electrostatic interactions, their recombination is slower that the recombination of the radical ions formed in model compounds that can undergo only electron transfer (SMe-NI-Me and NO(2)-CN-PYR, k = 1.2 × 10(9) s(-1)). The results of our study demonstrate that proton-coupled electron transfer can be used as an efficient method to achieve long-lived charge separation in light-driven processes.     

CHLORANIL-PHOTOSENSITIZED MONOMERIZATION OF DIMETHYLTHYMINE CYCLOBUTANE DIMERS and EFFECT OF MAGNESIUM PERCHLORATE

The photosensitized monomerization of the cyclobutane dimers of 1,3-dimethylthymine by p-chloranil was investigated by means of steady-state irradiation and laser-flash photolysis. Quantum yields for the monomerization are 0.34 for the cis,syn dimer, 0.39 for the trans,syn dimer, and much less than 10(-2) for the cis,anti isomer. Formation of the chloranil anion radical associated with quenching of triplet chloranil by the dimers demonstrates that electron transfer from dimers to triplet chloranil occurs to initiate the monomerization. Kinetic analysis suggested that the syn-dimer cation radicals undergo the ring cleavage at greater than or equal to 10(9) s-1 before escaping from the solvent cage, while the reactivity of the anti-dimer cation radical is very low. The different reactivities of the syn and anti dimer cation radicals are discussed in terms of through-bond coupling between the n orbitals of N(1) and N(1') involving the cyclobutane-ring sigma orbitals. In the cases of the syn-dimers, the sensitizer-dimer ion-radical pairs undergo the rapid geminate recombination that works as a major energy dissipating channel responsible for the lower-than-unity quantum yields. It has been found that the presence of Mg(ClO4)2 at 0.1 M enhances approximately 1.5 times either the monomerization of the syn dimers or the formation of the chloranil anion radical. A laser-flash photolysis study shows that Mg2+ forms a complex with either the triplet or the anion radical of chloranil. The net salt effects are attributed to the retardation of the rapid geminate recombination by the participation of Mg2+ in the sensitizer-dimer ion-radical pairs.     

Studies of the photolysis of aromatic esters in solution and in polymer films

Photolysis of 2-naphthylenemethyl-1-naphthylacetate (NMNA) and 9-anthracenemethyl-9-anthrylacetate (AMAA) yields radicals of methylnaphthalene and methylanthracene, respectively. The longevity of these radicals makes them suitable probes for studying primary and secondary cage recombination processes in solution, and in polymeric matrices. 2,2-Di-(4-tert-octylphenyl-1-picrylhydrazyl) (DPPH) is utilized as a radical trap to report on radicals which escape from the solvent cage. Quantum yields for photolysis of NMNA and AMAA were determined in solution and in poly(methyl methacrylate) films. Both unimolecular and bimolecular processes are suppressed as a result of the greater effective viscosity in polymeric media.     

Cage reactions in the photolysis of 2,2,4,4-tetramethyl-3-pentanone

The product quantum yields in the photolysis of 2,2,4,4-tetramethyl-3-pentanone have been measured in homogeneous solvents of different viscosities, in micellar solutions of cetyltrimethylammonium chloride and sodium dodecyl sulfate, and in dioctadecyl ammonium chloride vesicles. The product quantum yield in n-heptane was found to be 1. This value decreases to 0.5 in paraffin oil as a consequence of geminate recombination. In the presence of free radical scavengers, the extent of geminate disproportionation can be evaluated from the yields of isobutene and 2,2-dimethyl propionaldehyde. From these yields and the geminate recombination yields the total amount of geminate processes and the disproportionation-to-combination ratio for caged radicals are estimated. It is found that micelles provide the most efficient cages. In these media only about 10% of the radicals avoid cage processes. The disproportionation-to-combination ratio of tert-butyl and pivaloyl radicals was found to be extremely media dependent. The measured values ranged from about 0.2 in paraffin oil to 0.8 in cetyltrimethylammonium chloride micelles.     

Photolysis and recombination of adenosylcobalamin bound to glutamate mutase

Ultrafast spectroscopic measurements are used to determine the kinetics of homolysis and recombination for adenosylcobalamin bound in the active site of glutamate mutase. These are the first such measurements on an adenosylcobalamin-dependent enzyme. A short-lived intermediate is formed prior to formation of the cob(II)alamin radical. This intermediate was not observed upon photolysis of adenosylcobalamin in free solution. The intrinsic rate constant for geminate recombination for adenosylcobalamin bound to glutamate mutase is 1.08 +/- 0.10 ns-1, only 16% smaller than the rate constant measured in free solution, 1.39 +/- 0.06 ns-1, suggesting the protein does not greatly perturb the stability of the cobalt-carbon bond upon binding the coenzyme.     

Magnetic Field Effects on the Dynamics of Radical Pairs: The Partition Effect in Vesicles

A combination of product studies and laser flash photolysis (LFP) was used to study the recombination of radical pairs derived from dibenzyl ketone (DBK) and its methyl derivative. Two sizes of vesicles consisting of dioctade-cyldimethylammonium chloride (DODAC) were generated. In the product studies, irradiation of the ketone led to a substantial overall cage effect both above and below the phase-transition temperature. However, LFP results demonstrate that no geminate reactions, that correspond to the reactions of radicals generated from the same precursor molecule are occurring even at room temperature. The results are discussed in terms of the partition effect where the cage effect is determined by the differences in the solubility of the radical inside the vesicle bilayer and in the aqueous phase. In small (30 nm diameter) vesicles, most of the random recombination occurs after re-entry of the radicals into the bilayer, whereas in large (?150 nm) liposomes, a significant proportion of the recombination reactions takes place in the bulk water. This work demonstrates that magnetic fields can efficiently alter the reactivity of radicals involved in nongeminate pathways and further supports the use of the radical pair mechanism to explain possible effects of magnetic fields in biological systems.     

Molecular dynamics simulation of the geminate radical recombination in solution: effects of the large dipole moment of the radicals

Molecular dynamics simulation of a simple model system of the geminate radical pair in solution has been performed to elucidate the dynamic behavior of radicals. The diffusion process of radicals in the microscopic region was simulated and the effect of the dipole of the radicals was investigated in both the nonpolar and polar solvents. We found that the dipole-dipole interaction stabilized the radical pair with a small separation. The dipole pair can be the precursor of the experimentally observed sandwich radical dimer. The conformation of the dipole pair may not be favorable for the recombination of the radicals, which can be the reason of the high escape probability observed for the p-aminophenylthiyl radical.     

Enhanced cage effects in supercritical fluid solvents. the behavior of diffusive and geminate caged-pairs in supercritical carbon dioxide

The behavior of geminate and diffusive radical caged-pairs arising from the photolysis of dicumyl ketone in conventional and supercritical carbon dioxide (SC--CO(2)) solvents has been examined. The results suggest that locally enhanced solvent density about a solute (solvent/solute clustering) can lead to an enhanced cage effect near the critical pressure in supercritical fluid solvents. This enhanced cage effect is similar in magnitude for both diffusive and geminate caged-pairs.     

Kinetics of the thermal decomposition of 1,2-dioxaspiro[2,5]octane

The products and kinetics of the thermolysis of 1,2-dioxaspiro[2,5]octane in cyclohexanone and cyclohexanone-CCl₄ mixtures are studied. 1,2-Dioxaspiro[2,5]octane is consumed via two parallel routes: isomerization to oxepan-2-one and solvent (cyclohexanone) oxidation with the partial escape of radicals from the cage (17% at 25 °C). Under an inert atmosphere, the alkyl radicals formed by solvent oxidation initiate the chain radical decomposition of 1,2-dioxaspiro[2,5]octane. The mechanism of 1,2-dioxaspiro[2,5]octane thermolysis is discussed on the basis of the results obtained. The activation parameters of 1,2-dioxaspiro[2,5]octane isomerization to oxepan-2-one and reactions of dioxaspiro[2,5]octane with cyclohexanone are discussed.     

Electron magnetic resonance and density functional theory study of room temperature X-irradiated β-D-fructose single crystals

Stable free radical formation in fructose single crystals X-irradiated at room temperature was investigated using Q-band electron paramagnetic resonance (EPR), electron nuclear double resonance (ENDOR), and ENDOR induced EPR (EIE) techniques. ENDOR angular variations in the three main crystallographic planes allowed an unambiguous determination of 12 proton HFC tensors. From the EIE studies, these hyperfine interactions were assigned to six different radical species, labeled F1-F6. Two of the radicals (F1 and F2) were studied previously by Vanhaelewyn et al. [Vanhaelewyn, G. C. A. M.; Pauwels, E.; Callens, F. J.; Waroquier, M.; Sagstuen, E.; Matthys, P. J. Phys. Chem. A 2006, 110, 2147.] and Tarpan et al. [Tarpan, M. A.; Vrielinck, H.; De Cooman, H.; Callens, F. J. J. Phys. Chem. A 2009, 113, 7994.]. The other four radicals are reported here for the first time and periodic density functional theory (DFT) calculations were used to aid their structural identification. For the radical F3 a C3 carbon centered radical with a carbonyl group at the C4 position is proposed. The close similarity in HFC tensors suggests that F4 and F5 originate from the same type of radical stabilized in two slightly different conformations. For these radicals a C2 carbon centered radical model with a carbonyl group situated at the C3 position is proposed. A rather exotic C2 centered radical model is proposed for F6.