6,6′-Bis(1,5-diazabicyclo[3.1.0]hexane)

The interaction of 1,3-diaminopropane with glyoxal and NaOCl in water at pH 9.5–10.5 afforded the previously unknown 6,6′-bis(1,5-diazabicyclo[3.1.0]hexane). According to X-ray diffraction data, both bicyclic fragments of the title compound adopt a boat conformation. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 3, pp. 623–625, March, 1999.     

Electron Diffraction Study of the Molecular Structure of 6,6′-bis>(1,5-Diazabicyclo[3.1.0]hexane)

The molecular structure of 6,6-bis(1,5-diazabicyclo[3.1.0]hexane) was investigated by gas-phase electron diffraction using quantum-chemical calculations. Two conformations were found: boat for bicyclic fragments and anti relative to the exocyclic bond.     

Molecular structure of 6-cyclopropyl-1,5-diazabicyclo[3.1.0]hexane: gas phase electron diffraction and theoretical study

The molecular structure and conformational composition of 6-cyclopropyl-1,5-diazabicyclo[3.1.0]hexane were determined by gas phase electron diffraction and quantum chemical calculations. The gas phase electron diffraction data were well reproduced for the mixture of two conformers with anti-boat and gauche-boat mutual ring orientation having 15 and 85% relative abundance, respectively. The standard enthalpy of formation of substance under study was calculated using atomization reactions, yielding value of 307.9 ± 3.3 kJ mol^-1 in gas phase.     

Electron Diffraction Determination of Equilibrium Structure for Rigid Molecules. Equilibrium Configuration of 1,2-Thiaarsol According to Gas-Phase Electron Diffraction and Quantum-Chemical Data

For rigid polyatomic molecules, a procedure is described for determining their equilibrium geometrical structures by processing gas-phase electron diffraction, spectroscopy, and quantum-chemical data. The efficiency of the procedure is demonstrated by reference to the 1,2-thiaarsol molecule. For this molecule, quantum-chemical calculations of different degrees of complexity have been carried out, and harmonic and anharmonic force fields have been constructed. The force constants were employed for determining the equilibrium geometry from experimental data. Analysis of the results of this study suggests that the calculated vibrational corrections to the internuclear distances are almost independent of the level of the quantum-chemical calculations.Original Russian Text Copyright © 2004 by Yu. I. Tarasov, I. V. Kochikov, D. M. Kovtun, N. Vogt, B. K. Novosadov, and A. S. Saakyan__________Translated from Zhurnal Strukturnoi Khimii, Vol. 45, No. 5, pp. 822–829. September–October, 2004.     

Molecular Structure of PrBr3 and HoBr3 According to Simultaneous Electron Diffraction and Mass Spectrometry Experiment

The saturated vapors of praseodymium and holmium tribromides were investigated for the first time by electron diffraction with mass spectral monitoring at 1100(10) and 991(10) K. It is established that the molecules have a pyramidal effective configuration with bond angles Br–Pr–Br = 114.7(10)° and Br–Ho–Br = 115.3(11)°. Given the low deformation vibration frequencies of lanthanide tribromide molecules, the insignificant pyramidality of the r_g configuration may correspond to the planar equilibrium geometry of D_3h symmetry for the molecules. The internuclear distances r_g(Pr–Br) = 2.696(6) and r_g(Ho–Br) = 2.594(5) point to the lanthanide compression effect. The vibration frequencies of PrBr₃ and HoBr₃ molecules were estimated from electron diffraction data.     

Molecular Structure of Neodymium Tribromide from Gas-Phase Electron Diffraction Data

The structural investigation of molecules in the vapor over neodymium tribromide was performed by synchronous gas-phase electron diffraction and mass spectrometric (GED/MS) experiments at 1110(10) K. Besides the monomeric molecules (NdBr₃), a small amount (0.7%) of the dimer (Nd₂Br₆) was detected. For NdBr₃, the thermal-average bond length r _g (Nd–Br) of 2.675(6) Å was determined. The equilibrium structure was estimated to be planar (or nearly planar) with r _e (Nd–Br) of 2.659(7) Å. Three vibrational frequencies were estimated using the GED data: ₁ = 193 cm^–1, ₂ = 35 cm^–1, ₄ = 41 cm^–1. The structural parameters of Nd₂Br₆ could not be refined and were constrained at the estimated values during the analysis.     

Molecular structure of 1,5-diazabicyclo[3.1.0]hexane as determined by gas electron diffraction and quantum-chemical calculations

The equilibrium molecular structure and conformation of 1,5-diazabicyclo[3.1.0]hexane (DABH) has been studied by the gas-phase electron-diffraction method at 20 degrees C and quantum-chemical calculations. Three possible conformations of DABH were considered: boat, chair, and twist. According to the experimental and theoretical results, DABH exists exclusively as a boat conformation of C s symmetry at the temperature of the experiment. The MP2 calculations predict the stable chair and twist conformations to be 3.8 and 49.5 kcal mol(-1) above the boat form, respectively. The most important semi-experimental geometrical parameters of DABH (r(e), A and angle)e), deg) are (N1-N5) = 1.506(13), (N1-C6) = 1.442(2), (N1-C2) = 1.469(4), (C2-C3) = 1.524(7), (C6-N1-C2) = 114.8(8), (N5-N1-C2) = 107.7(4), (N1-C2-C3) = 106.5(9), and (C2-C3-C4) = 104.0(10). The natural bond orbital (NBO) analysis has shown that the most important stabilization factor in the boat conformation is the n(N) --> sigma*(C-C) anomeric effect. The geometry calculations and NBO analysis have been performed also for the bicyclohexane molecule.     

Determination of Molecular Structure in Terms of Potential Energy Functions from Gas-Phase Electron Diffraction Supplemented by Other Experimental and Computational Data

Different approaches of equilibrium structure determinations by the gas-phase electron diffraction (ED) method or by its combination with other relevant techniques have been reviewed. Some problems and limitations of these approaches are discussed. Special attention is paid to various potential energy function models. Different types of equilibrium bond lengths obtained by the optimization of ED data or their combination with experimental and computational spectroscopic data are compared in tables. Relations between different types of vibrational corrections are discussed. Structure data determined by other methods or approaches are given for comparison.     

1,5-Diazabicyclo[3.1.0]hexanes and 1,6-diazabicyclo[4.1.0]heptanes: a new method for the synthesis,quantum-chemical calculations,and X-ray diffraction study

A new method was developed for the synthesis of 6-substituted 1,5-diazabicyclo[3.1.0]hexanes and 7-substituted 1,6-diazabicyclo[4.1.0]heptanes by condensation of N-monohalotrimethylene- and N-monohalotetramethylenediamines with carbonyl compounds in the presence of bases. X-ray diffraction studies and quantum-chemical B3LYP/6-31G* calculations demonstrated that the conformations of the resulting bicyclic systems are stabilized by stereoelectronic interactions. As a result, a boat conformation prevails in 1,5-diazabicyclo[3.1.0]hexanes, whereas the energies of chair, half-chair, and boat conformations of 1,6-diazabicyclo[4.1.0]heptanes are equalized.     

Kinetics and mechanism of the anodic dissolution of gold in solutions of 1,5-diazabicyclo[3.1.0]hexane and its precursors

Studies of the electrochemical behavior of hexahydropyrimidine, 1,5-diazabicyclo[3.1.0]hexane, and 1,3-diaminopropane on a gold electrode via cyclic voltammetry allow us to conclude that gold anodes are subject to corrosion in presence these compounds, yielding complexes that migrate into the solutions and discharge on the counter electrode, producing gold metal deposit. 1,5-Diazabicyclo[3.1.0]hexane is found to form complexes with gold that are much more stable that those formed by hexahydropyrimidine and 1,3-diaminopropane.     

Molecular Structure of BiBr3: An Electron Diffraction Study

The molecular structure of BiBr₃ was determined by gas-phase electron diffraction. The principal geometrical parameters are r (Bi—Br) = 2.567 ± 0.005 Å and _221D;Br—Bi—Br = 98.6 ± 0.2°. The force field of the molecule was obtained by a normal coordinate analysis utilizing both experimental vibrational frequencies and electron diffraction mean amplitudes of vibration. The variation of bond lengths and bond angles within the Group 15 trihalides is consistent with the expected trend, except that all bismuth trihalide bond angles appear to be somewhat large.     

Toward a More Accurate Silicon Stereochemistry: An Electron Diffraction Study of the Molecular Structure of Tetramethylsilane

The present electron diffraction study of the molecular structure of tetramethylsilane, augmented with theoretical calculations, answers the need for accurate and detailed information on the most fundamental molecules containing silicon. The Si—C bond length is r _g = 1.877 ± 0.004 Å, in perfect agreement with a previous study (Beagley, B.; Monaghan, J. J.; Hewitt, T. G. J. Mol. Struct. 1971 8 401). The C—H bond length is r _g= 1.110 ± 0.003 Å and the Si—C—H angle is 111.0 ± 0.2°. The experimental data are consistent with a model of T _d symmetry and staggered methyl conformation. The barrier to methyl rotation is estimated to be 5.7 ± 2.0 kJ mol^–1 on the basis of the experimentally observed average torsion of the methyl groups.     

Molecular Structure and Conformation of p-Bis(trimethylsilyl)benzene: A Study by Gas-Phase Electron Diffraction and Theoretical Calculations

The molecular structure and conformation of p-bis(trimethylsilyl)benzene have been investigated by gas-phase electron diffraction, ab initio MO calculations at the HF/6-31G*, MP2(f.c.)/6-31G*, and B3LYP/6-31G* levels, and MM3 molecular mechanics calculations. The calculations indicate the syn- and anti-coplanar conformations, with two bonds in the plane of the benzene ring, to be energy minima. The perpendicular conformations, with two bonds in a plane orthogonal to the ring plane, are transition states. The two coplanar conformers have nearly the same energy with a low interconversion barrier, 0.3–0.5 kJ mol^–1. The calculated lengths of the and bonds differ by only a few thousandths of an angstrom, in agreement with electron diffraction results from molecules containing either or bonds. The geometrical distortion of the benzene ring in p-bis(trimethylsilyl)-benzene may be described by superimposing independent distortions from each of the two SiMe₃ groups. The electron diffraction intensities from a previous study (Rozsondai, B.; Zelei, B.; Hargittai, I. J. Mol. Struct. 1982, 95, 187) have been reanalyzed, imposing constraints from the theoretical calculations, and using a model based on a 1:1 mixture of the two coplanar conformers. The effective torsion angles of the SiMe₃ groups may indicate nearly free rotation. Important geometrical parameters from the present electron diffraction analysis are , and . While the mean bond lengths are virtually the same from the previous and present analyses, the new ipso angle is in better agreement with the MO calculations [HF, 116.9° MP2(f.c.), 117.1° B3LYP, 116.9°].     

ChemInform Abstract: The Molecular Structure of Hexaborane(12) in the Gas Phase as Determined by Electron Diffraction.

The structure of gaseous arachno-B6H12 (I) is determined, because geometrical parameters such as interatomic distances and angles are entirely lacking.     

Structure and energy studies of β-diketonates. XIII. Molecular structure of gadolinium tris-hexafluoroacetylacetonate Gd(C5O2HF6)3

In a mass spectrometric study, it was found that the saturated vapor over gadolinium tris-hexafluoroacetylacetonate Gd(C₅O₂HF₆)₃ contains molecular forms with a mass exceeding the mass of the dimer. The vapor overheated to 250–300°C contains only the monomer form. Simultaneous electron diffraction and mass spectrometric experiment aimed at investigating the structure of the Gd(hfa)₃ monomer molecule was carried out at 284(5)°C. The Gd(hfa)₃ molecule was found to have the symmetry of the equilibrium D ₃ configuration. The basic structural parameters are r _h1(Gd-O) = 2.291(10) Å, r _h1(O-C) = 1.257(10) Å, r _h1(C-C_r) = 1.404(6) Å, r _h1(C_F-F)_av = 1.341(3) Å, ∠OGdO = 72.8(0.4)°. The GdO₆ coordination polyhedron has the structure of a distorted antiprism. The rotation angle of the O-O-O trigonal faces relative to their position in a regular prism is 18.7(0.9)°. Quantum chemical calculations (HF/SBK, 6-31G*) generally reproduce the experimental structure, but the Gd-O internuclear distance is exaggerated by 0.04 Å.     

ChemInform Abstract: Electron Diffraction Study of the Molecular Structure of Zirconium Perchlorate in the Gas Phase.

ChemInform is a weekly Abstracting Service, delivering concise information at a glance that was extracted from about 100 leading journals. To access a ChemInform Abstract of an article which was published elsewhere, please select a “Full Text” option. The original article is trackable via the “References” option.     

Microcrystal Electron Diffraction (MicroED) for Small‐Molecule Structure Determination

The development of new methods to analyze and determine molecular structures parallels the ability to accelerate synthetic research. For many decades, single‐crystal analysis by X‐ray diffraction (SXRD) has been the definitive tool for structural analysis at the atomic level; the drawback, however, is that a suitable single crystal of the analyte needs to be grown. The recent innovation of the crystalline sponge (CS) method allows the microanalysis of compounds simply soaked in a readily prepared CS crystal, thus circumventing the need to screen crystallization conditions while also using only a trace amount of the sample. In this context, electron diffraction for the structure determination of small molecules is discussed as potentially the next big development in this field.     

Electron diffraction and quantum-chemical studies of the conformational properties of the 1,3-benzenedisulfochloride molecule

A combined electron diffraction (T = 394(5) K) and quantum-chemical (MP2/6-31G**) study has been performed to investigate the molecular structure of 1,3-benzenedisulfochloride (1,3-BDSC). The 1,3-BDSC molecule was found to exist as the trans (I) and cis (II) stable conformers where the planes containing S-Cl bonds are perpendicular to the plane of the benzene ring. The energy of conformer I is 0.13 kJ/mol lower than that of conformer II. The mutual effect of the sulfochloride groups was found to be absent, which is evident from the coincident bond lengths and angles in the two conformers. The main structural parameters of the conformers are r _h1(C-H)_av = 1.103(4) Å, r _h1(C-C)_av = 1.401(3) Å, r _h1(C-S) = 1.767(4) Å, r _h1(S=O) = 1.422(3) Å, r _h1(S-Cl) = 2.048(4) Å, ∠Cl-S-O = 106.6(2)°, ∠C-S-Cl = 100.4(5)°, ∠ O-S-O = 123.2(5)°.     

Molecular and crystal structure of 3,3-dimethyl-5-(2-naphthyl)-1-(4-nitrophenyl)-3,5a-dihydro-1H-azireno[1,2-c]imidazole

An X-ray study of 3,3-dimethyl-5-(2-naphthyl)-1-(4-nitrophenyl)-3,5a-dihydro-1H-azireno[1,2-c]imidazole revealed that the pyrazoline cycle has an envelope conformation. The endocyclic C=N double bond is slightly twisted. Quantum chemical calculations showed that this ring conformation is due to intramolecular interactions and is typical for substituted bicyclic aziridines.     

Molecular Structure of 1,3,5-Tris (Trimethylstannyl) Benzene: An Electron Diffraction Study

The molecular structure of 1,3,5-tris (trimethylstannyl) benzene has been determined by gas-phase electron diffraction. The C — C bond length is in good agreement with that in benzene. In agreement with the somewhat electron-releasing character of the substituents, the endocyclic bond angles at the substituents are somewhat smaller than 120°. The mean value of Sn — C bond lengths is greater than that in tetraphenyltin and tetramethyltin. The SnMe₃ groups appear freely rotating around the C_aryl — Sn bonds. The following bond lengths (r _g) and bond angles were determined: (Sn — C)_mean 2.150 ± 0.007 Å, C — C 1.399 ± 0.005 Å, (C — H)_mean 1.105 ± 0.006 Å, < C — C(Sn) — C 117.7 ± 1.7º, < C_aryl — Sn — C_methyl 106.7 ± 0.7º < Sn — C — H 111.5 ± 0.9º.