DNA separation at a liquid-solid interface

We demonstrate that it is possible to separate a broad band of DNA on a solid substrate without topological obstacles. The mobility was found to scale with molecular size (N) as N(-0.25), while the resolution scaled as N(0.75) indicating that diffusivity on this substrate was minimal. By varying the buffer concentration we were able to show that the mobility for a given chain length scaled with the persistent length (p) as p(1/2). This could be shown to be related to the Gaussian conformation of the chains adsorbed on the surface. A two-dimensional corrugated surface of nonporous silica beads was produced using a self-assembling process at the air/water interface. Even though the surface corrugations were comparable to persistence length we show that they do not affect the mobility, indicating that surface friction rather than topological constraints are the predominant mechanism of separation on a surface.     

Motion of single DNA molecules at a liquid-solid interface as revealed by variable-angle evanescent-field microscopy

A variable-angle total-internal-reflection fluorescence microscope (VATIRFM) capable of providing a large range of incident angles was constructed for imaging single DNA molecule dynamics at a solid/liquid interface. An algorithm using a public-domain image-processing program, ImageJ, was developed for single-molecule counting. The experimental counts at various incident angles with different evanescent-field layer (EFL) thicknesses are affected by molecular diffusion. The dynamics of molecules near the surface and the observed counts in the VATIRFM are elucidated using a limited one-dimensional random-walk diffusion model. The simulation fits well with the experimental counting results. Further analysis using the simulation reveals the details of single-molecule motion. One implication is that the measured intensities cannot be used directly to determine the distances of molecules from the surface, though the majority of fluorescence does come from the EFL. Another implication is that rather than providing molecular concentrations within EFL the experimental counting results depict the distance-dependent dynamics of molecules near the surface. Thus, the VATIRFM could be a powerful technique to study the surface repulsion/attraction of molecules within a few hundred nanometers of the surface. Further studies show that molecules at low ionic strengths experience electrostatic repulsion at distances much further away from the surface than the calculated thickness of the electrical double layer.     

Surface chemistry of metal-organic frameworks at the liquid-solid interface

Metal-organic frameworks (MOFs) are a fascinating class of novel inorganic-organic hybrid materials. They are essentially based on classic coordination chemistry and hold much promise for unique applications ranging from gas storage and separation to chemical sensing, catalysis, and drug release. The evolution of the full innovative potential of MOFs, in particular for nanotechnology and device integration, however requires a fundamental understanding of the formation process of MOFs. Also necessary is the ability to control the growth of thin MOF films and the positioning of size- and shape-selected crystals as well as MOF heterostructures on a given surface in a well-defined and oriented fashion. MOFs are solid-state materials typically formed by solvothermal reactions and their crystallization from the liquid phase involves the surface chemistry of their building blocks. This Review brings together various key aspects of the surface chemistry of MOFs.     

Solvent controlled self-assembly at the liquid-solid interface revealed by STM

The effect of solvent on the two-dimensional (2D) supramolecular ordering of monodendron 1 at the liquid-solid interface has been systematically investigated by means of scanning tunneling microscopy (STM). Solvents range from those with hydrophilic solvating properties, such as alkylated alcohols and acids, to hydrophobic solvents such as alkylated aromatics and alkanes. Dramatic differences in the 2D ordering are observed depending on the nature of the solvent. Of particular interest is the fact that in hydrophobic solvating solvents, such as aliphatic and aromatic hydrocarbons, solvent molecules are coadsorbed in the 2D molecular network while this is not the case for alkylated alcohols or acids. Furthermore, in the case of the coadsorbing solvents, a striking influence of the alkyl chain length has been observed on the 2D pattern formed. The solvent and alkyl chain length dependences are discussed in terms of molecule-molecule interactions (homo and hetero) and molecule-substrate interactions.     

Thermodynamical equilibrium of binary supramolecular networks at the liquid-solid interface

Coadsorption of two different carboxylic acids, benzenetribenzoic acid and trimesic acid, was studied at the liquid-solid interface in two different solvents (heptanoic and nonanoic acid). Independent alteration of both concentrations in binary solutions resulted in six nondensely packed monolayer phases with different structures and stoichiometries, as revealed by means of scanning tunneling microscopy (STM). All of these structures are stabilized by intermolecular hydrogen bonding between the carboxylic acid functional groups. Moreover, phase transitions of the monolayer structures, accompanied by an alteration of the size and shape of cavity voids in the 2D molecular assembly, could be achieved by in situ dilution. The emergence of the various phases could be described by a simple thermodynamic model.     

Mediated coadsorption at the liquid-solid interface: Stabilization through hydrogen bonds

Stable adsorption of 1,3,5-tris(4-pyridyl)-2,4,6-triazine (TPT) molecules from the liquid phase was only observed in binary solutions, that is, in the presence of a second (adsorptive) species. The process of mediated coadsorption of a molecular species at the liquid-solid interface was accomplished through complexation of TPT with a second type of molecule acting as a "molecular glue" via hydrogen bonds. Scanning tunneling microscopy (STM) was utilized to investigate the structure of the coadsorbed monolayers at the liquid-solid interface. Trimesic acid (TMA) and terephthalic acid (TPA)--both benzene rings with disposed carboxylic acid groups-were appropriate to precipitate the stable adsorption of TPT. According to the different symmetry and number of carboxylic acid groups, various networks were observed.     

Charge-assisted hydrogen bond-directed self-assembly of an amphiphilic zwitterionic quinonemonoimine at the liquid-solid interface

Charge-assisted hydrogen bond-directed self-assembly of a zwitterionic quinonemonoimine was investigated at the liquid/solid interface using scanning tunnelling microscopy. Factors governing morphology, chirality and multilayer formation are discussed, presenting an important foundation for understanding the properties of a large family of related molecules with interesting potential in supramolecular design.     

Aza-BODIPY molecular assembly at the liquid-solid interface driven by Br⋯FBF interactions

In this work, two aza-BODIPY derivatives, 3,5-diphenyl-1,7-di(p-dodecyloxyphenyl)-aza-BODIPY (CJF) and 3,5-di(p-bromophenyl-1,7-di(p-dodecyloxyphenyl)-aza-BODIPY (2Br-CJF) acted as model molecules to form the self-assembly monolayers on the solid-liquid interface. With the utilizing of scanning tunnelling microscope (STM), we demonstrated that intermolecular Br⋯FBF interactions existed in 2Br-CJF self-assembly structure and played an important role in strengthening the stability of 2Br-CJF self-assembly structure. This result is supported by density functional theory (DFT) calculation.     

Calorimetric determination of enthalpies of lysozyme folding at a liquid-solid interface

Summary Two hydrated and aged cement pastes from India (NCB), w/c=0.4, of a similar chemical composition but of a different specific surface and different strength (OPC, C-33 and C-43), hydrated at w/c=0.4 for 1 month, were studied by XRD after 1 year and 5-6 year ageing on contact with air. They were tested by static heating (SH) in fresh state, and by DTA/DTG/TG, IR and mass spectrometry (MS), after ageing, presented elsewhere. The main XRD peaks of (i) portlandite were decreasing with T and disappearing about 450°C, (ii) calcite peak at room T was small and broad, it increased gradually, especially after portlandite disappearance; above 600°C it was lowered and it was lost above 700°C. Important variation in the d(001) of portlandite with ageing was observed, exceeding the standard value of d(001)=4.895 Å (72-0156). It was higher in the paste C-33 (4.925-4.936 Å), containing more carbonates, than in the paste C-43 (4.916-4.927 Å). Small variations only were found in the value of d(101), i.e. 2.627-2.635 Å (nominally 2.622 Å), whereas the d(104) of calcite could be used as internal standard and other calcium carbonates (vaterite and aragonite) showed a small variation only. The increase ind(hkl) with temperature was straight linear (in portlandite d(001)=0.095 Å, at 30-400°C) and the thermal expansion coefficient estimated thereform was high (4.75-4.95·10^-5 K^-1). Close to the T of decomposition the d/T became steeper. The thermal variation of d(104)=3.035 Å of calcite (d=0.015 Å at 30-400°C) was smaller than that ofd(101) of portlandite (d=0.025 Å at 30-400°C) and was similar in C-33 and C-43. The thermal expansion coefficient was 1.54 10^-5 K^-1, thus higher than the reported _a=0.65·10^-5 K^-1.     

A model of adsorption at liquid-solid interface involving association in the bulk phase

A model of monolayer adsorption of binary liquid mixtures on homogeneous and heterogeneous solid surfaces involving association of one component in the bulk phase is discussed. Suitable model calculations, illustrating association and heterogeneity effects, have been performed according to an equation derived for adsorption excess. This equation has been examined by using the experimental data of adsorption of alcohols from benzene andn-heptane on silica gel.

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Adsorptionsmodell für die Grenzfläche Feststoff-Flüssigkeit unter Berücksichtigung der Assoziation in der Flüssigkeitsphase

Zusammenfassung Es wird ein Adsorptionsmodell binärer, flüssiger Mischungen an homogenen und heterogenen Oberflächen von Feststoffen unter Beachtung der Assoziation eines der Bestandteile in der Flüssigkeitsphase diskutiert. Mit der aus dem Oberflächenüberschuß abgeleiteten Gleichung wurden entsprechende Modellberechnungen durchgeführt, die die mit Assoziation und Heterogenität verbundenen Effekte illustrieren. Die Gleichung wurde für die experimentellen Daten der Alkoholadsorption aus Benzol undn-Heptan an Kieselgel überprüft.

     

Incorporation dynamics of molecular guests into two-dimensional supramolecular host networks at the liquid-solid interface

The objective of this work is to study both the dynamics and mechanisms of guest incorporation into the pores of 2D supramolecular host networks at the liquid-solid interface. This was accomplished by adding molecular guests to prefabricated self-assembled porous monolayers and the simultaneous acquisition of scanning tunneling microscopy (STM) topographs. The incorporation of the same guest molecule (coronene) into two different host networks was compared, where the pores of the networks either featured a perfect geometric match with the guest (for trimesic acid host networks) or were substantially larger than the guest species (for benzenetribenzoic acid host networks). Even the moderate temporal resolution of standard STM experiments in combination with a novel injection system was sufficient to reveal clear differences in the incorporation dynamics in the two different host networks. Further experiments were aimed at identifying a possible solvent influence. The interpretation of the results is aided by molecular mechanics (MM) and molecular dynamics (MD) simulations.     

UV-Vis spectroscopic study on effects of pressure for adsorption ofp-nitrotoluene at liquid-solid interface

The behavior ofp-nitrotoluene adsorbed at zeolite/n-heptane interface has been investigated by the electronic spectroscopy under pressure up to 300 MPa. The uv-vis absorption bands of adsorbedp-nitrotoluene were deconvoluted into ones for the species adsorbed on the cation sites, and one for that on the pore wall of zeolite. The peak of adsorbed species on the cation site red-shifted by 20–80 nm from the position of the same species in the liquid phase, and their magnitudes of shift depended on the strength of electric field generated by the cation in zeolites. The peak intensities of adsorbed species on the cation site were enhanced but these or the pore wall site were reduced with the increase in pressure, suggesting that a part ofp-nitroluene molecules on the pore wall site desorbed and the adsorption on the cation site was enhanced by compression. The pressure dependence of peak intensity indicated that the behavior of this adsorption system was strongly governed by the solvation structure of the adsorbate in the zeolite pore. In particular, it was found that the adsorption of solvent molecules on the cation site strongly affected the volume change of the adsorption system.     

Expressions for evaluating the possibility of slip at the liquid-solid interface in open tube capillary electrochromatography

In this work, expressions are constructed and solved that describe the velocity field of electroosmotic flow (EOF) in open tube capillary electrochromatography (CEC) systems when the possibility of having unequal tangential velocities at the liquid-solid interface is considered and a slip condition is employed as a boundary condition for the velocity of the EOF at the capillary wall. The coupled equations of hydrodynamics (momentum balance equation) and electrostatics (Poisson equation) are solved numerically in order to obtain the distribution of the velocity field as well as the value of the volumetric flow rate in the open tube. Also, expressions for the velocity field and the volumetric flow rate of the EOF are presented that are valid for certain electrolytic systems and for certain parameter values for which analytical solutions to the momentum balance and Poisson equations could be obtained. The results presented in this work indicate that having slip in the velocity of the EOF at the wall of the capillary could (i) substantially increase the electroosmotic velocity in the plug-flow region of the radial domain of the open capillary tube and (ii) increase the portion of the radial domain of the open capillary tube where the velocity of the EOF has a plug-flow profile, which in turn could increase the average velocity and volumetric flow rate of the EOF in the open capillary tube. Furthermore, the modeling approach and the results presented in this work indicate a method for experimentally evaluating the possibility of having slip in the velocity of the EOF at the capillary wall.     

An in situ RBS system for measuring nuclides adsorbed at the liquid-solid interface

An in situ RBS system has been developed for measuring heavier nuclides adsorbed at the inner surface of a thin lighter window specimen of a liquid container in order to determine the rate constants for their sorption and release at the liquid-solid interface. The tolerance of a thin silicon window of the sample assembly, in which Xe gas of one atmosphere is enclosed, against the bombardment of the probing ion beam has been tested. A desorption behaviour of a lead layer adsorbed at the SiO₂ surface layer of the silicon window into deionized water has been measured as a preliminary experiment.     

Self-assembly of a catechol-based macrocycle at the liquid-solid interface: experiments and molecular dynamics simulations

This combined experimental (STM, XPS) and molecular dynamics simulation study highlights the complex and subtle interplay of solvent effects and surface interactions on the 2-D self-assembly pattern of a Schiff-base macrocycle containing catechol moieties at the liquid-solid interface. STM imaging reveals a hexagonal ordering of the macrocycles at the n-tetradecane/Au(111) interface, compatible with a desorption of the lateral chains of the macrocycle. Interestingly, all the triangular-shaped macrocycles are oriented in the same direction, avoiding a close-packed structure. XPS experiments indicate the presence of a strong macrocycle-surface interaction. Also, MD simulations reveal substantial solvent effects. In particular, we find that co-adsorption of solvent molecules with the macrocycles induces desorption of lateral chains, and the solvent molecules act as spacers stabilizing the open self-assembly pattern.     

UV-Vis spectroscopic study on effects of pressure for adsorption ofp-nitrotoluene at liquid-solid interface

The behavior ofp-nitrotoluene adsorbed at zeolite/n-heptane interface has been investigated by the electronic spectroscopy under pressure up to 300 MPa. The uv-vis absorption bands of adsorbedp-nitrotoluene were deconvoluted into ones for the species adsorbed on the cation sites, and one for that on the pore wall of zeolite. The peak of adsorbed species on the cation site red-shifted by 20–80 nm from the position of the same species in the liquid phase, and their magnitudes of shift depended on the strength of electric field generated by the cation in zeolites. The peak intensities of adsorbed species on the cation site were enhanced but these or the pore wall site were reduced with the increase in pressure, suggesting that a part ofp-nitroluene molecules on the pore wall site desorbed and the adsorption on the cation site was enhanced by compression. The pressure dependence of peak intensity indicated that the behavior of this adsorption system was strongly governed by the solvation structure of the adsorbate in the zeolite pore. In particular, it was found that the adsorption of solvent molecules on the cation site strongly affected the volume change of the adsorption system.     

Diffusion of isolated surface-active molecules at the air/water interface

Fluorescence correlation spectroscopy was applied to study the diffusion of isolated surface-active molecules at air/water interfaces. Rhodamine 6G was used as a surface-active fluorescent tracer. Results show that the diffusion coefficient of the Rhodamine 6G at the interface is about 2.5 times higher than in the bulk. Effects of Rhodamine 6G concentration and added SDS or CTAB surfactants have been studied. Diffusion of Rhodamine 6G at the interface is slowed down at surfactant concentration corresponding to a mean distance between molecules of 10 and 40 nm, indicating a long-range interaction.     

Toroid morphology by ABC-type amphiphilic rod-coil molecules at the air-water interface

The interfacial and aggregation behavior of the ABC-type amphiphilic molecules with semirigid dumbbell-shaped core and variable length of hydrophobic branched tails (R=(CH2)nCH3 with n=5 (1), 9 (2), 13 (3)) were investigated. At low surface pressure, smooth, uniform monolayers were formed at the air-water interface by molecules 1 and 2, whereas for molecule 3 unique 2D toroid aggregates have been formed. These aggregates were relatively stable within a range of surface pressure and spreading solution concentration. Upon compression, the 2D toroid aggregates collapsed into large, round 3D aggregates. Finally, the choice of spreading solvent has a great influence on aggregation formation into 2D or 3D micelles as a result of the variable balance of the hydrophobic interactions of branched tails and the pi-pi stacking interaction between aromatic segments.