Discrimination between endotoxin and (1----3)-beta-D-glucan using turbidimetric kinetic assay with Limulus amebocyte lysate

A procedure for the Limulus amebocyte lysate (LAL) test discriminating between endotoxin and (1----3)-beta-D-glucan based on the turbidimetric kinetic method was proposed. Endotoxin and (1----3)-beta-D-glucan, which are elicitors of the activation of LAL, showed different reaction courses with this lysate. To analyze the difference in the reactions, two parameters, the maximum differential coefficient of the reaction (Dmax) and the reaction time required to obtain Dmax (Tp) were defined. The logarithmic plottings of Tp versus Dmax (Tp-Dmax plot) discriminated between endotoxin and (1----3)-beta-D-glucan. Endotoxin was measured with a standard curve plotting logarithmic endotoxin concentration versus Dmax (ET-Dmax plot). The endotoxin calculated from Dmax was less influenced by (1----3)-beta-D-glucan than that calculated from the usual gelation time. A small amount of endotoxin in a sample could be concealed by the addition of polymyxin B, which inhibited the activation of LAL by endotoxin. (1----3)-beta-D-glucan was measured without being affected by the presence of a small amount of endotoxin using LAL with polymyxin B. The following procedure is proposed as a LAL test to discriminate between endotoxin and (1----3)-beta-D-glucan. (1) Identify the main substance (endotoxin or (1----3)-beta-D-glucan) triggering the activation of LAL using the Tp-Dmax plot. (2) Use the appropriate method to measure the main substance: the ET-Dmax plot for endotoxin or the LAL with polymyxin B for (1----3)-beta-D-glucan.     

Rapid method for preparing a beta-glucan-specific sensitive fraction from Limulus (Tachypleus tridentatus) amebocyte lysate

By separating Limulus amebocyte lysate by cation-exchange chromatography with an SP-Toyopearl 650C column, a fraction insensitive to endotoxin, yet specifically sensitive to beta-glucan, was successfully obtained in the unadsorbed portion. This fraction showed beta-glucan dose-dependent clotting enzyme activity, although no sensitivity to endotoxin. This beta-glucan-dependent reaction showed no interference in the presence of endotoxin, with the fraction also showing sensitivity towards various kinds of beta-glucan, i.e. curdlan, pachyman, laminaran and lichenan. The sensitivity towards curdlan was approximately 10(-10) g/ml.     

Camdas: An automated conformational analysis system using molecular dynamics

We present an automated conformational analysis program, CAMDAS (Conformational Analyzer with Molecular Dynamics And Sampling). CAMDAS performs molecular dynamics (MD) calculations for a target molecule and samples conformers from the trajectory of the MD. The program then evaluates the similarities between each of the sampled conformers in terms of the root- mean-square deviations of the atomic positions, clusters similar conformers, and finally prints out the clustered conformers. This MD-based conformational analysis is a broadly used method, and CAMDAS is intended to provide a convenient framework for the method. CAMDAS has the ability to find the representative conformers automatically from an arbitrarily given structure of the molecule. The accuracy of the program was examined using N- acetylalanine-N-methylamide, and the obtained result was consistent with that of the systematic search method. In the test calculation of cyclodecane, CAMDAS could identify most of the known conformers and their conformational enantiomers by examining only 5000 conformers. In addition, the potential-scaled method, which we have developed previously as an accelerating technique for MD, could find two additional conformers of cyclodecane that have not been reported. CAMDAS presents a convenient way to find the energetically possible conformers of a molecule, which is needed especially in the early stage of drug design.     

Measurement of enzyme kinetics using microscale steady-state kinetic analysis

This paper describes a new technique--microscale steady-state kinetic analysis (microSKA)--that enables the rapid and parallel analysis of enzyme kinetics. Rather than physically defining a microscopic reactor through microfabrication, we show how the relative rates of reaction and transport in a macroscopic flow chamber, where the enzyme is immobilized on one wall of the chamber, results in the confinement of an enzyme-catalyzed reaction to a microscopic reactor volume adjacent to this wall. This volume has linear dimensions that are orders of magnitude smaller than the physical dimensions of the system (i.e., micrometer vs millimeter). Conversion within this volume is monitored at steady state as a function of position, rather than time. In this way, limitations due to reactor dead time and mixing are avoided. We use microSKA to determine kinetic parameters for the alkaline phosphatase-catalyzed de-phosphorylation of nonfluorescent methylumbelliferyl phosphate (MUP) to fluorescent 7-hydroxy-4-methylcoumarin (HMC) at two different values of pH. Kinetic parameters measured with microSKA are in good agreement with values obtained using conventional methods, if one takes into account effects of immobilization on enzyme activity. This technique provides a rapid and simple method for determining enzyme kinetics using small amounts of sample material and may be useful for applications in proteomics, drug discovery, biocatalyst development, and clinical diagnostics.     

Modification of the<Emphasis Type="Italic"> Limulus</Emphasis> amebocyte lysate assay for the analysis of glucan in indoor environments

-1,3-d-Glucan is a biologically active component mainly from fungi that has been shown in several studies to be related to respiratory health outcomes from damp building exposures. Here, we report the development and application of a method for the analysis of the glucan extracted in 0.5 N NaOH solution making use of an available preparation of Limulus amebocyte lysate (LAL). The method yields reproducible -1,3-d-glucan measurements from samples of outdoor air, yeast cells, fungal spore preparations and ragweed pollen, and is more sensitive than competing measurements. The LAL-based measurement compared favourably to that based on size-exclusion chromatography using UV and refractive index detection. Growth conditions of the fungi did not materially change the concentrations of glucan in spores indicating that this is a stable property. Glucan content was proportional to spore surface area; however, some species contain higher relative spore glucan contents.     

Determination of reaction kinetics of barley straw using thermogravimetric analysis

Alternaria alternata is well known as a producer of tentoxin as well as some other phytotoxic substances. A new method to prepare protoplasts fromAlternaria alternata, suitable for many purposes, was developed. By use of a mixture of lytic enzymes fromHelix pomatia, andTrichoderma harzianum with the commercial preparation “novozym,” it was possible to prepare protoplasts from all stages of fungal development, including the tentoxin production phase. Optimal incubation conditions led to the conversion of 1 g (wet wt) mycelial cells into 2.3–2.5 × 10⁷ protoplasts within 3–6 h. Submerged as well as surface-grown mycelia were suitable. Optimal stabilization of protoplasts was obtained in 0.8M KCI. The protoplasts were used for both mutagenic treatment and physiological studies. UV irradiation of protoplasts resulted in formation of hyperproducing mutants. Protoplasts were able to form tentoxin. The biosynthetic activity of protoplasts from surface-grown mycelium was 40% that of intact mycelia. Although intact submerged myclia did not synthesize tentoxin, protoplasts of both types of mycelia produced this toxin, indeed protoplasts from submerged mycelia were even more active than those from surface mycelia. Neither oxygen tension nor mechanical stress during the shaking culture is the reason for the lack of tentoxin production by intact submerged mycelial pellets. Since tentoxin-synthesizing enzymes were apparently present in both mycelial types, it is probable that metabolites or lytic products in the pellets inhibit tentoxin-forming enzymes under submerged conditions.     

Determination of reaction kinetics of wheat straw using thermogravimetric analysis

A simple rapid method of enzyme labeled anti-isotype assay (ELIA) for detection of monoclonal isotype on hybridoma cells is proposed. This alternative method was first carried out on hybridoma cell lines 147C11 and 257C11 produced against Trypanosoma cruzi and male accessory secretion of Panstrongylus megistus, respectively. The monoclonal antibodies produced by these hybridoma were characterized by this method as IgM (147C11) and IgG1 (257C23) isotypes, allowing evaluation of isotype without having to wait until the concentration of antibody present in the supernatant itself rises. Results were confirmed by Ouchterlony immunodiffusion. The proposed method offers the advantages of a permanent rapid procedure for light microscopy.     

An automated system for activation analysis with short half-life radionuclides using a carbonfiber irradiation facility

Contamination of rabbits during transfer in a fast irradiation facility has been reduced by development of a rabbit system containing no metal parts, and only plastic and carbonfiber. As a result, this system could be automated and has been equipped with a sample changer. Flexibility and versatility in the operation of this new system was attained by a combination of software and hardware control. With this new system, large-scale analysis can be performed with a considerable saving in man-power of the users.     

A homogeneous quenching resonance energy transfer assay for the kinetic analysis of the GTPase nucleotide exchange reaction

A quenching resonance energy transfer (QRET) assay for small GTPase nucleotide exchange kinetic monitoring is demonstrated using nanomolar protein concentrations. Small GTPases are central signaling proteins in all eukaryotic cells acting as a “molecular switches” that are active in the GTP-state and inactive in the GDP-state. GTP-loading is highly regulated by guanine nucleotide exchange factors (GEFs). In several diseases, most prominently cancer, this process in misregulated. The kinetics of the nucleotide exchange reaction reports on the enzymatic activity of the GEF reaction system and is, therefore, of special interest. We determined the nucleotide exchange kinetics using europium-labeled GTP (Eu-GTP) in the QRET assay for small GTPases. After GEF catalyzed GTP-loading of a GTPase, a high time-resolved luminescence signal was found to be associated with GTPase bound Eu-GTP, whereas the non-bound Eu-GTP fraction was quenched by soluble quencher. The association kinetics of the Eu-GTP was measured after GEF addition, whereas the dissociation kinetics could be determined after addition of unlabeled GTP. The resulting association and dissociation rates were in agreement with previously published values for H-Ras^Wt, H-Ras^Q61G, and K-Ras^Wt, respectively. The broader applicability of the QRET assay for small GTPases was demonstrated by determining the kinetics of the Ect2 catalyzed RhoA^Wt GTP-loading. The QRET assay allows the use of nanomolar protein concentrations, as more than 3-fold signal-to-background ratio was achieved with 50 nM GTPase and GEF proteins. Thus, small GTPase exchange kinetics can be efficiently determined in a HTS compatible 384-well plate format.

Reaction of aluminium chloride with poly(divinyl benzene) particles--a reaction kinetic study using infrared spectroscopy

Porous poly(para-divinylbenzene) and poly(meta-divinylbenzene) particles were synthesised from para-divinylbenzene and meta-divinylbenzene monomers with toluene and 2-ethylhexanoic acid as porogens. The residual vinyl groups in the particles were thereafter reacted using aluminium chloride with dichlorobenzene as a catalyst. The conversion of vinyl groups was followed by analysing polymer particles taken from the reaction mixture at different time intervals. Infrared spectroscopy both in the mid and near infrared region was used as the analytical technique. The intensity changes in the overtone absorption at 1628 nm due to the vinyl bonds were used as the basis for the quantification of the vinyl group consumption. Infrared spectra of the particles in the mid IR were also measured to understand changes taking place in the polymer matrix during the reaction. The results indicated that residual vinyl groups in these polymer particles were consumed during the reaction with aluminium chloride. The reaction of aluminium chloride with the polymer matrix was explained by proposing mechanisms for the formation of different products during the reaction. The complex formed between aluminium chloride and the residual vinyl groups seemed to induce addition of HCl to the vinyl group or leads to crosslinking and/or cyclisation in the case poly(para-DVB) particles. The reaction of aluminium chloride with poly(meta-DVB) takes place to a lesser extent.     

The analytical kinetics of the titanium(III)-perchlorate reaction-I Homogeneous reaction kinetics

A spectrophotometric investigation has been made of the analytically relevant kinetics of the titanium(III)-perchlorate reaction in chloride and sulphate media. Sulphate media give better and more reproducible results. The reaction in sulphate medium is first-order in titanium(III) and hydrogen ion, but of fractional order in perchlorate. The pseudo third-order rate constant k(3)' for the rate equation has a value of 4.22 +/- 0.15 l(2) mol(-2) s(-1) at 49 degrees C. The energy of activation in sulphate medium is 84 +/- 4 kJ mol(-1), and in chloride medium is 80 +/- 12 kJ mol(-1). Small amounts of chloride m a sulphate medium, or of sulphate in a chloride medium, retard the reaction. The basis has been laid for a rate-measurement method for determination of perchlorate at low concentrations.     

高锰酸钾-甲醛-Cu(Ⅰ)化学发光体系的研究

在甲醛存在的条件下,在酸性溶液中,高锰酸钾可以氧化Cu(Ⅰ)而产生很强的化学发光。据此采用流动注射技术,建立了一种利用高锰酸钾 甲醛 Cu(Ⅰ)化学发光体系测定铜的化学发光分析法。方法的检出限为6.3×10-8g mL,相对标准偏差为1.8%[6.0×10-6g mLCu(Ⅰ),n=11],线性范围为2.0×10-7～1.0×10-4g mL,并对反应机理进行了探讨。     

Automated flow enzyme-linked immunosorbent assay (ELISA) system for analysis of methyl parathion

Sensitive detection of pesticides is of utmost importance in environment and food analysis. Immunological methods are widely used to detect pesticides in agricultural and environmental samples wherein antibodies are employed against the target molecules. Accurate diagnosis depends on the affinity and specificity of the antibody preparation used, and high affinity antibodies are essential for the detection of very small amounts of pesticides. Enzyme linked immuno sorbent assay (ELISA) coupled with flow injection analysis (FIA) technique provides a very high sensitivity with high throughput of analyses. Automation of this analysis scheme ensures precise detection with high accuracy. The present development aims at providing a user-friendly system for achieving this objective. It employs a 8952 microcontroller for precise flow of reagents, samples, substrate and conjugates used for analysis to be passed through an immobilized antibody column at predetermined time. With the sequence and flow control of buffers used, it also provides the option for reuse of the immobilized antibody column. The system is flexible to accommodate multiple sequences up to a maximum of 99 steps. It is customizable for different flow ELISA applications. It can control up to eight solenoid valves (dc 24 V) and two peristaltic pumps and has one 12 bit analog channel for data acquisition. With the serial interface port, the system provides convenient means for data acquisition into the computer. The system has been successfully tested for immuno analysis of organophosphorous pesticide methyl parathion.     

A minimal hybridization chain reaction (HCR) system using peptide nucleic acids

The HCR represents a powerful tool for amplification in DNA-based circuitry and sensing applications, yet requires the use of long DNA sequences to grant hairpin metastability. Here we describe a minimal HCR system based on peptide nucleic acids (PNAs). A system comprising a 5-mer stem and 5-mer loop/toehold hairpins was found to be suitable to achieve rapid amplification. These hairpins were shown to yield >10-fold amplification in 2 h and be suitable for the detection of a cancer biomarker on live cells. The use of γ-peg-modified PNA was found to be beneficial.

A minimal peptide nucleic acid (PNA) HCR system based on a 5-mer stem and 5-mer loop/toehold hairpins was developed. The system was applied to the detection of a cancer biomarker on the surface of living cells.     

Study of automated mass spectral deconvolution and identification system (AMDIS) in pesticide residue analysis

The effects of overlapping levels and concentration ratios of overlapping components, and of scan rates of the mass spectrometer, on the capability of the automated mass spectral deconvolution and identification system (AMDIS) in pesticide residue analysis were studied. To investigate the capability of AMDIS in removing interferences from the overlapping peaks, this system was applied to data files obtained from the gas chromatography/mass spectrometry (GC/MS) analysis of two overlapping (co-eluting) pesticides (beta-HCH and PCNB) in full scan mode. Differences in overlap levels, the concentration ratios of the two overlapping components and the scan rates of the instrument were studied. When the difference in scan number of overlapping compounds was equal to 1 scan, AMDIS incompletely extracted 'purified' mass spectra but as the difference increased to 3 or more scans, complete correct spectra could be extracted. The results also show that when the scan rate was in the range of 0.4-0.90 s/scan and the concentration ratios of the target compound/interference were above 1/5, there were ideal deconvolution results for this approach. To further study the application of AMDIS to pesticide residue analysis, AMDIS was applied to the identification of pesticides spiked in real samples (cabbage and rice). Typical pesticides being evaluated were identified using AMDIS at concentrations >50 ng/g in the extracts.     

Rapid automated assay of anti-oxidation/radical-scavenging activity of natural substances by sequential injection technique (SIA) using spectrophotometric detection

A PC-controlled sequential injection analysis (SIA) system equipped with a spectrophotometric diode-array detector is used for rapid monitoring and evaluation of antioxidation/radical scavenging activity of biological samples. The automated method is based on the known reaction of stable 2,2-diphenyl-1-picrylhydrazyl radical (DPPH) with antioxidants in organic or aqueous-organic media resulting in bleaching of DPPH due to its quenching by the interaction with the analytes. The decrease of the absorbance of DPPH (compared to blank experiment carried out with water–ethanol 1:1 instead of the test solution) measured at 525 nm is related to concentration of an antioxidant in the test solution. With the optimised SIA procedure it is possible to detect down to micromolar concentrations of model antioxidants such as ascorbic acid, caffeic acid, (+)-catechin, (–)-epicatechin and rutin and to evaluate the concentration of these antioxidants in the micromolar to millimolar range. The sample throughput is 45 h^–1. Thanks to its rapidity and sensitivity, the proposed SIA method is suitable for performing routine screening tests for the presence of various antioxidants in large series of lyophilised herbal or mushroom extracts (the amount of sample needed for the analysis is several milligrams).     

Determination of trace amounts of mercury(II) in water samples using a novel kinetic catalytic ligand substitution reaction of hexacyanoruthenate(II)

A simple, sensitive, selective and rapid kinetic catalytic method has been developed for the determination of Hg(II) ions at micro-level. This method is based on the catalytic effect of Hg(II) ion on the rate of substitution of cyanide in hexacyanoruthenate(II) with nitroso-R-salt (NRS) in aqueous medium and provides good accuracy and precision. The concentration of Hg(II) catalyst varied from 4.0 to 10.0 × 10⁻⁶ M and the progress of reaction was followed spectrophotometrically at 525 nm (λ_max of purple-red complex [Ru(CN)₅NRS]³⁻,  = 3.1 × 10³ M⁻¹ s⁻¹) under the optimized reaction conditions; 8.75 × 10⁻⁵ M [Ru(CN)₆⁴⁻], 3.50 × 10⁻⁴ M [nitroso-R-salt], pH 7.00 ± 0.02, ionic strength, I = 0.1 M (KCl), temp 45.0 ± 0.1 °C. The linear calibration curves, i.e. calibration equations between the absorbance at fixed times (t = 15, 20 and 25 min) versus concentration of Hg(II) ions were established under the optimized experimental conditions. The detection limit was found to be 1.0 × 10⁻⁷ M of Hg(II). The effect of various foreign ions on the proposed method has also been studied and discussed. The method has been applied to the determination of mercury(II) in aqueous solutions.     

Interdiffusion measurements of modified poly(arylether sulfone)s using nuclear reaction analysis

The interdiffusion and miscibility behavior of three different types of modified poly(arylether sulfone)s with deuterated poly(arylether sulfone) is studied by depth profiling using the nuclear reaction D(³He, α)p. The diffusion coefficients are found to be in the range of 10⁻¹⁵ and 10⁻¹⁴ cm²/s at 195°C. A random copolymer of poly(arylether sulfone) containing 4,4-bis-(4′-hydroxyphenyl)valeric acid units is only partially miscible with deuterated poly(arylether sulfone) when the comonomer content is 8.8 mol %, whereas blends with comonomer contents of 1.7 and 4.5 mol % are miscible as indicated by complete interdiffusion. The transition from miscibility to immiscibility is caused by repulsive interactions of copolymer segments and can be explained in terms of a mean-field theory of random copolymer blends. Also, poly(arylether sulfone)s grafted with 0.4 wt % maleic anhydride or having pyromellitic anhydride endgroups are miscible with deuterated poly(arylether sulfone)s. © 1997 John Wiley & Sons, Inc. J Polym Sci B: Polym Phys 35: 2083–2091, 1997