Characterization of soil organic matter fractions from grassland and cultivated soils via C content and delta13C signature

Variations in (13)C natural abundance and distribution of total C among five size and density fractions of soil organic matter, water soluble organic C (WSOC) and microbial biomass C (MBC) were investigated in the upper layer (0-20 cm) of a continuous grassland soil (CG, C(3) vegetation), a C(3)-humus soil converted to continuous maize cultivation (CM, C(4) vegetation) and a C(3)-humus soil converted to a rotation of maize cultivation and grassland (R). The amounts of WSOC and MBC were both significantly larger in the CG than in the CM and the R. In the three soils, WSOC was depleted while MBC was enriched in (13)C as compared with whole soil C. The relative contributions to the total C content of C stored in the macro-organic matter and in the size fraction 50-150 microm decreased with decreasing total C contents in the order CG > R > CM, while the relative contribution of C associated with the clay- and silt-sized fraction <50 microm increased. This reflects a greater stability and physical protection against microbial degradation associated with soil disruption (tillage) of the clay- and silt-associated organic C, in relation to the organic C in larger size fractions. The size and density fractions from the CG soil showed significant differences in (13)C enrichment, indicating different degrees of microbial degradation and stability of soil organic C associated with physically different soil organic matter (SOM) fractions. Delta(13)C analysis of the size and density fractions from CM and R soils reflected a decreasing turnover rate of soil organic C with increasing density among the macro-organic matter fractions and with decreasing particle size.     

Covalent and electrostatic incorporation of amines into hypercrosslinked polymers for increased CO2 selectivity

Two methods of incorporating functional groups rich in nitrogen into low cost microporous hypercrosslinked polymers (HCPs) have been evaluated and the effects on the carbon dioxide CO₂/N₂ IAST selectivity were measured. Electrostatic incorporation of an ammonium salt into a sulfonic acid-containing HCP polymer afforded a static CO₂ uptake of 2.5 mmol g⁻¹ with a CO₂/N₂ IAST selectivity of 42:1 at 1 bar and 298 K. Using column breakthrough measurements with a 15:85 CO₂/N₂ mixture at 298 K and 1 bar, a selectivity of 17:1 was obtained. However, varying the counterion resulted in polymers with lower CO₂/N₂ selectivity values. Decoration of the parent polymer with CO₂-philic imidazole followed by electrostatic ammonium salt incorporation blocked some of the micropores reducing the selectivity which re-emphasizes the role and importance of pore width for CO₂/N₂ selectivity. © 2018 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2018 , 56, 2513–2521     

Syntheses of two 5-hydroxymethyl-2'-deoxycytidine phosphoramidites with TBDMS as the 5-hydroxymethyl protecting group and their incorporation into DNA

5-Hydroxymethylcytosine (5-hmC) is a newly discovered DNA base modification in mammalian genomic DNA that is proposed to be a major epigenetic mark. We report here the syntheses of two new versions of phosphoramidites III and IV from 5-iodo-2'-deoxyuridine in 18% and 32% overall yields, respectively, with TBDMS as the 5-hydroxyl protecting group. Phosphoramidites III and IV allow efficient incorporation of 5-hmC into DNA and a "one-step" deprotection procedure to cleanly remove all the protecting groups. A "two-step" deprotection strategy is compatible with ultramild DNA synthesis, which enables the synthesis of 5hmC-containing DNA with additional modifications.     

Copper-mediated reduction of CO2 with pinB-SiMe2Ph via CO2 insertion into a copper-silicon bond

Reaction of [(IPr)Cu-OtBu] (1) with pinB-SiMe(2)Ph (2) leads to the Cu-silyl complex [(IPr)Cu-SiMe(2)Ph] (3). Insertion of CO(2) into the Cu-Si bond of 3 is followed by transformation of the resulting silanecarboxy complex [(IPr)Cu-O(2)CSiMe(2)Ph] (4) to the silanolate complex [(IPr)Cu-OSiMe(2)Ph] (5) via extrusion of CO. As 5 reacts readily with 2 to regenerate 3, a catalytic CO(2) reduction to CO is feasible. The individual steps were studied by in situ(13)C NMR spectroscopy of a series of stoichiometric reactions. Complexes 3, 4, and 5 were isolated and fully characterized, including single-crystal X-ray diffraction studies. Interestingly, the catalytic reduction of CO(2) using silylborane 2 as a stoichiometric reducing agent leads not only to CO and pinB-O-SiMe(2)Ph but also to PhMe(2)Si-CO(2)-SiMe(2)Ph as an additional reduction product.     

Synthesis of 2'-C-difluoromethylribonucleosides and their enzymatic incorporation into oligonucleotides

[Chemical reaction: See text] Nucleosides bearing a branched ribose have significant promise as therapeutic agents and biotechnological and biochemical tools. Here we describe synthetic entry into a new subclass of these analogues, 2'-C-beta-difluoromethylribonucleosides. We constructed the glycosylating agent 4 in three steps from 1,3,5-tri-O-benzoyl-alpha-D-ribofuranose 1. The key steps included nucleophilic addition of difluoromethyl phenyl sulfone to 2-ketoribose 2 followed by mild and efficient reductive desulfonation. Ribofuranose 4 glycosylated bis(trimethylsilyl)uracil directly, giving difluoromethyluridine 7 efficiently after deprotection. Conversion of 4 to the corresponding ribofuranosyl bromide allowed efficient access to C, A, and G analogues. A related approach starting from methyl D-ribofuranose offered synthetic entry into the diastereomeric manifold, 2'-C-alpha-difluoromethyl-arabino-alpha-pyrimidine. To incorporate 2'-C-beta-difluoromethyluridine into an oligodeoxynucleotide we converted 7 to the bisphosphate and carried out successive ligation reactions using T4 RNA ligase and T4 DNA ligase. Analogous to natural RNA linkages, the resulting oligonucleotide undergoes hydroxide-catalyzed backbone scission at the difluoromethyluridine residue via internal transphosphorylation.     

Measuring the 13C content of soil-respired CO2 using a novel open chamber system

Carbon dioxide respired by soils comes from both autotrophic and heterotrophic respiration. 13C has proved useful in differentiating between these two sources, but requires the collection and analysis of CO2 efflux from the soil. We have developed a novel, open chamber system which allows for the accurate and precise quantification of the delta13C of soil-respired CO2. The chamber was tested using online analyses, by configuring a GasBench II and continuous flow isotope ratio mass spectrometer, to measure the delta13C of the chamber air every 120 s. CO2 of known delta13C value was passed through a column of sand and, using the chamber, the CO2 concentration stabilized rapidly, but 60 min was required before the delta13C value was stable and identical to the cylinder gas (-33.3 per thousand). Changing the chamber CO2 concentration between 200 and 900 micromol.mol(-1) did not affect the measured delta13C of the efflux. Measuring the delta13C of the CO2 efflux from soil cores in the laboratory gave a spread of +/-2 per thousand, attributed to heterogeneity in the soil organic matter and roots. Lateral air movement through dry sand led to a change in the delta13C of the surface efflux of up to 8 per thousand. The chamber was used to measure small transient changes (+/-2 per thousand) in the delta13C of soil-respired CO2 from a peaty podzol after gradual heating from 12 to 35 degrees C over 12 h. Finally, soil-respired CO2 was partitioned in a labelling study and the contribution of autotrophic and heterotrophic respiration to the total efflux determined. Potential applications for the chamber in the study of soil respiration are discussed.     

Synthesis and properties of 2-azidodeoxyadenosine and its incorporation into oligodeoxynucleotides

2-Azidodeoxyadenosine (7) was conveniently synthesized from deoxyguanosine (2) by use of a combined reagent of TMSN₃–BuONO. The structure of the tautomer of the azido derivative was determined by ¹H NMR. Reaction of 7 with iPr₂NP(OEt)₂ gave an intermediate 10 of the Staudinger reaction. Incorporation of 7 into a DNA 13mer resulted in a significant decrease of the T_m value of the DNA duplex upon hybridization with the complementary strand. The thermal stability was discussed based on the hydrogen bond energy and electrostatic repulsion.     

Collection and storage of CO2 for 13C analysis: An application to separate soil CO2 efflux into root- and soil-derived components

Soil surface CO2 efflux is comprised of CO2 from (i) root respiration and rhizosphere microbes and (ii) heterotrophic respiration from the breakdown of soil organic matter (SOM). This efflux may be partitioned between these sources using delta13C measurements. To achieve this, continuous flow isotope ratio mass spectrometry can be used and, in conjunction with 10 mL septum-capped vials, large numbers of samples may be analysed using a Finnigan MAT Delta(plus)XP interfaced to a Gas Bench II. Here we describe a number of advances to facilitate such work, including: (i) a technique for monitoring mass spectrometer performance, (ii) improvements to sample storage, and (iii) a gas-handling system for incubating and sampling the CO2 derived from roots and soils. Mass spectrometer performance was monitored using an automated refillable vial. Compressed air analysed with this system had mean delta13C of -9.61 +/- 0.16 per thousand (+/- 1sigma, n = 28) collected over four runs. Heating the butyl rubber septa used to seal the vials at 105 degrees C for 12 h improved the sample storage. After air transportation over 12 days, the isotope composition of the CO2 at ambient concentrations was unchanged (before: -35.2 +/- 0.10 per thousand, n = 4; after: -35.3 +/- 0.10 per thousand, n = 15); without heat treatment of the septa the CO2 became slightly enriched (-35.0 +/- 0.14 per thousand, n = 15). The linearity of the Gas Bench II was found to decline above 8000 micromol CO2 mol(-1). To stay within a linear range and to allow the incubation of soil and root material we describe a gas-handling system based around a peristaltic pump. Finally, we demonstrate these methods by growing a C-4 grass (Guinea grass, Panicum maximum Jacq.) in a C-3 soil. Root respiration was found to contribute between 5 and 22% to the soil surface CO2 efflux. These methodologies will facilitate experiments aimed at measuring the isotopic composition of soil-derived CO2 across a range of ecological applications.     

Three sources of CO2 efflux from soil partitioned by 13C natural abundance in an incubation study

This study describes a novel approach to separate three soil carbon (C) sources by one tracer method (here 13C natural abundance). The approach is based on the combination of C3 and C4 sources in different treatments, identical decomposition of C3 and C4 substances in soil, and subsequent calculation of their contribution to the total CO2 efflux. We used the temporal dynamics of the CO2 efflux from a C3 grassland soil amended with added C3 or C4 slurry and/or C3 or C4 sugar to estimate contributions of three separate C sources: native soil organic matter (SOM), slurry and sugar, to CO2 efflux. Soil with slurry and/or sugar was incubated under controlled conditions, and concentration and delta13C values of evolved CO2 were measured over a 2-week period. The main assumption needed for separation of three C sources in CO2 efflux, i.e. identical decomposition of applied C3 and C4 sugars in soil, was investigated and proven. The relative contribution to the CO2 efflux increased, but its duration decreased with an increased microbial availability of the C source, i.e. sugar > slurry > SOM. The microorganisms used the C sources according to their availability. The contribution of sugar to the CO2 efflux was finished after 2-4 days. Separation of three CO2 sources and comparison of CO2 from different treatments tracing the changes of SOM and slurry decomposition induced by addition of sugar were investigated. During the sugar decomposition (the first 2-4 days), the SOM decomposition strongly decreased. At the same time the contribution of slurry-C to CO2 increased. The shortcomings and limitations as well as possible future applications of the suggested method including FACE (Free Air Carbon dioxide Enrichments) and continuous labelling experiments are discussed.     

Thermodynamic and Catalytic Insights into Non-Reductive Transformation of CO2 with Amines into Organic Urea Derivatives

Carbon dioxide (CO₂) utilization as a carbonyl source is an attractive and promising approach to yielding value-added organic urea derivatives, which are currently produced with toxic reagents such as phosgene and carbon monoxide, along with the contribution to mitigating global warming. However, the direct intermolecular reaction between CO₂ and amines into organic urea derivatives has thermodynamic limitations, and such obstacles need to be considered well in order to establish efficient reaction systems. Herein, this review describes the thermodynamic aspects for producing several organic urea compounds, viz., N,N’-dibutylurea, N,N’-di(tert-butyl)urea, 2-imidazolidinone (ethylene urea), N,N’-dimethyl-2-imidazolidinone, tetrahydro-2-pyrimidinone (propylene urea), and N,N’-diphenylurea, based on the results of computational calculations. Besides, a variety of the state-of-the-art reaction systems with/without catalyst for synthesizing such organic urea compounds operated under pressurized CO₂ have been summarized and discussed to make not only advantages but also disadvantages clear. We have also overviewed the very recently reported approaches that employ alkylcarbamic acids as substrates and instead does not require external CO₂. The thermodynamic and catalytic insights garnered here could be a fruitful guideline for fairly assessing each reaction system and further improving the efficiency of CO₂ utilization as a carbonyl source.     

二乙基锌促进CO2的硅氢化反应以及CO2为C1合成子的有机胺甲酰化或脲化反应

CO₂的固定和转化具有重要研究意义,特别是采用廉价且良好生物相容性的金属催化剂将其转化为有用的有机化合物.本工作报道采用商品化ZnEt₂（1.0 mol%）可促进CO₂的硅氢化反应生成甲氧基硅醚,以及CO₂为C1合成子的有机胺甲酰化或脲化反应生成酰胺或脲类化合物.在1.0 mol% ZnEt₂存在下,CO₂和（EtO）₃SiH发生硅氢化反应,一锅选择性还原为甲氧基硅醚（CH₃OSi（OEt）₃）.考察了反应条件的影响,在1.0 MPa CO₂起始压力下,90℃反应7 h,甲氧基硅醚的产率达到约90%.当上述反应体系中存在有机胺时,则发生了CO₂为C1合成子的的有机胺甲酰化或脲化反应.当采用二级有机胺为底物时,反应生成酰胺类产物;当一级有机胺为底物时,反应主要生成脲类产物.考察了反应底物取代基的影响,含脂肪基和芳香基的二级有机胺均可发生甲酰化反应,芳香基的对位含给电子取代基时明显有利于该甲酰化反应.含脂肪基和芳香基的一级有机胺均可发生脲化反应,芳香基对位取代基的电子性质对脲化反应的影响规律不如在甲酰化反应中的明显.     

二氧化碳直接高选择性合成液体燃料

正作为主要温室气体的CO_2,也是一种自然界大量存在的碳资源,若能借助太阳能和风能等可再生能源获取电能分解水制得的氢气,将CO_2转化为化学品或燃料,不仅能实现温室气体的减排,而且有助于解决对化石燃料的过度依赖以及可再生能源的存储问题~1。作为一类高碳烃类     

Synthesis of enantiopure azetidine 2-carboxylic acids and their incorporation into peptides

Enantiopure azetidine 2-carboxylic acids were prepared by hydrolysis of the corresponding 2-cyano azetidines, without ring cleavage of the azetidine or epimerization. The produced amino acids, which are conformationally constrained analogues of phenylalanine, can be cleanly debenzylated and used for the synthesis of tripeptides. In the course of the synthesis of new enantiopure 2-cyano azetidines through intramolecular alkylation of a metallated amino nitrile, it was found that the involved anionic cyclisation can be thermodynamically controlled, thus enhancing its diastereoselectivity.     

基于一氧化碳、二氧化碳和氧气分子吸附为探针的碳化钼、碳化钨、氮化钼和氮化钨的表面化学性质：密度泛函理论分析

作为具有吸引力的电极材料,过渡金属碳化物与氮化物被应用在许多电化学储能及能量转换领域. 本工作中,通过密度泛函理论计算,以及一氧化碳 （CO）, 二氧化碳（CO₂）和 氧气（O₂）分子的吸附来表征钼和钨的碳化物及氮化物,如碳化钼（Mo₂C）、碳化钨（W₂C）、氮化钼（Mo₂N）和氮化钨（Mo₂C）的表面化学性质. 这些探针分子可为研究钼和钨的碳化物及氮化物表面在酸性/碱性的氧化还原性质提供衡量方法. 计算结果表明,CO₂分子的吸附发生在路易斯碱位,其碱性降低顺序为α-W₂C(001) > α-W₂N(001) > β-Mo₂C(001) > γ-Mo₂N(100). 此外,CO和O₂分子吸附可用于评估上述碳化物及氮化物的还原能力,其还原性减小顺序为β-W₂C(100) > α-Mo₂C(100) > α-W₂N(001) > α-W₂C(001) > β-Mo₂C(001) > γ-Mo₂N(100). 由于还原本性,使得上述这些碳化物和氮化物成为在各种催化反应中有可能取代贵金属的良好候选材料.     

Electron transfer and bond-forming reactions following collisions of Cl2+ and HCl2+ with CO

Collisions between Cl(2+) and CO have been investigated using time-of-flight mass spectrometry over a collision energy range between 2.2 eV and 7.1 eV in the centre-of-mass frame. The formation of Cl(+), CO(+) and C(+) in electron transfer reactions has been detected and an unusual bond-forming reaction which generates CCl(2+) has also been observed. The reactive cross-sections, in arbitrary units, for the electron transfer reactions have been evaluated. To extract these cross sections we employ a new method of analysing mass spectral intensities for crossed-beam experiments, an algorithm which allows inter-comparison of the fluxes of all the ionic products from the electron transfer reactions. The observed electron transfer reactivity has been rationalized by calculations based on Landau-Zener theory. To account for the observation of CCl(2+), we have calculated the relevant energetics showing that the lowest lying doublet state of this dication is bound and is energetically accessible at our collision energies. These energetic arguments indicate that electron transfer in the exit channel between the separating CCl(2+) and O atom probably forms C(+) ions via the dissociation of CCl(+). Additionally, collisions between HCl(2+) and CO have been studied at collision energies from 2.2 to 7.0 eV in the centre-of-mass frame. In this collision system, proton transfer to form HCO(+) is observed to compete efficiently with dissociative and non-dissociative electron transfer.     

One‐Pot,Direct Incorporation of [11C]CO2 into Carbamates

Why beat about the bush? An operationally simple and mild reaction based on the direct fixation of ¹¹CO₂ with 1,8‐diazabicyclo[5.4.0]undec‐7‐ene (DBU) has been developed for the synthesis of ¹¹C‐labeled carbamates at 75 °C within 10 minutes in radiochemical yields above 70 % (see scheme). This strategy should be immediately useful for the construction of new radiotracers for positron emission tomography and other applications.