Quantum-chemical and correlation study of deprotonation and complexation of 1-amino-4-hydroxyanthraquinone

Existing views on the deprotonation and complexation of 1-amino-4-hydroxyanthraquinone are wrong. This compound, its anions, and complexes with metals are not individual substances, but they form a dynamic equilibrium mixture of keto-enol (keto-oxide) and amino-imine tautomers. Different samples of the same compound differ by the tautomeric composition, the respective information is contained in their electron absorption spectra. In weak alkaline solutions the deprotonation occurs exclusively at the hydroxy group. Most typical structure of 1-amino-4-hydroxyanthraquinone anions is 1,10-quinoid, its metal complexes have 9,10-and 1,10-quinoid structures. The ground states of molecules are more responsible for the tautomeric transformations than the excited states. Quantum-chemical calculations of tautomeric anthraquinones by semiempirical PPP methods are more reliable than modern ab initio calculations.     

Prediction of pKa values of nido-carboranes by density functional theory methods

A great parallel exists between metal complexes of cyclopentadienyl and arene ligands on one side and metal complexes of the nido derivatives of the icosahedral o-carborane clusters. With few exceptions, the metal complexation in the cluster can be viewed as the substitution of one or more bridging hydrogen atoms by the metal. Therefore, a necessary requirement for the complexation is the deprotonation of the nido cluster to generate a coordination site for that metal. The reaction to remove these protons, which most probably is one of the most commonly done processes in boron and metallaborane chemistry, is barely known, and no quantitative data are available on the magnitude of their pKa values. With the purpose of determining the acidity of nido-carboranes, a procedure to calculate the pKa values of nido boron clusters is presented in this paper for the first time. To this objective, some nido clusters have been selected and their geometry and NMR-spectroscopic properties have been studied, giving a good correlation between the theoretical and experimental data in both geometry distances and 11B NMR spectroscopy. Of notice is the result that proves that the singular carbon atom in the thermodynamic isomer of [C2B10H13]- is definitely part of the cluster and that its connection with the C2B3 face would be better defined by adding additional interactions with the two boron atoms nearest to the second cluster carbon. The pKa values of the nido species have been calculated by correlating experimental pK(a) values and calculated reaction Gibbs energies DeltaG(s). Some pKa values of importance are -4.6 and +13.5 for 7,8-[C2B9H13] (1) and 7,8-[C2B9H12]- (2), respectively.     

Aqueous solution study of Cu(II) and Ni(II) complexes of macrocyclic oxa- and thia-containing trans-dioxo-tetraamines

Four macrocyclic trans-dioxo-tetraamines containing sulphur or oxygen as additional donors have been prepared: 1-oxa-3,14-dioxo-4,7,10,13-tetraazacyclopentadecane, 1-thia-3,14-dioxo-4,7,10,13-tetraazacyclopentadecane, 1-oxa-3,16-dioxo-4,8,11,15-tetraazacycloheptadecane and 1-thia-3,16-dioxo-4,8,11,15-tetraazacycloheptadecane. Their protonation as well as their metal binding properties with Cu²⁺ and Ni²⁺ have been determined at 25°C in 0.10 mol dm⁻³ KNO₃. The complexation process was investigated by potentiometric, calorimetric and UV/VIS-spectroscopic titrations. IR-spectroscopy was used to establish the involvement of the amido groups in the coordination. Oxidation of the complexes to the trivalent state of the metal ion was also investigated by cyclic voltammetry. Metal ion complexation promotes the deprotonation of the amide nitrogens, resulting in a neutral complex with four nitrogen donors and a MLH_-2 stoichiometry at pH 8. Additional complexes with stoichiometry ML and MLH_-1 were needed to describe the complexation in the pH range 2–11. Their stability constants were calculated. The presence of oxygen or sulphur donors as well as ring enlargement influence the complexation properties. The electronic spectra indicate rather distorted tetragonal coordination geometries for the Cu(II)-complexes. The Ni(II)-complexes are all square–planar with the exception of an equilibrium between a square–planar and an octahedral form for NiL¹H₋₂. All complexes are easily but irreversibly oxidized to the trivalent state of the metal ion.     

Complexes of DOTA-bisphosphonate conjugates: probes for determination of adsorption capacity and affinity constants of hydroxyapatite

The adsorption on hydroxyapatite of three conjugates of a bisphosphonate and a macrocycle having C1, C2, and C3 spacers and their terbium complexes was studied by the radiotracer method using 160Tb as the label. The radiotracer-containing complex of the conjugate with the C3 spacer was used as a probe for the determination of the adsorption parameters of other bisphosphonates that lack a DOTA unit. A physicochemical model describing the competitive adsorption was successfully applied in the fitting of the obtained data. The maximum adsorption capacity of bisphosphonates containing bulky substituents is determined mainly by their size. For bisphosphonates having no DOTA moiety, the maximum adsorption capacity is determined by the electrostatic repulsion between negatively charged bisphosphonate groups. Compounds with a hydroxy or amino group attached to the alpha-carbon atom show higher affinities. Macrocyclic compounds containing a short spacer between the different bisphosphonic acid groups and the macrocyclic unit exhibit high affinities, indicating a synergic effect of the bisphosphonic and the macrocyclic groups during adsorption. The competition method described uses a well-characterized complex and allows a simple evaluation of the adsorption behavior of bisphosphonates. The application of the macrocycle-bisphosphonate conjugates allows easy radiolabeling via complexation of a suitable metal isotope.     

Catalysis of diribonucleoside monophosphate cleavage by water soluble copper(II) complexes of calix[4]arene based nitrogen ligands

Calix[4]arenes functionalized at the 1,2-, 1,3-, and 1,2,3-positions of the upper rim with [12]ane-N(3) ligating units were synthesized, and their bi- and trimetallic zinc(II) and copper(II) complexes were investigated as catalysts in the cleavage of phosphodiesters as RNA models. The results of comparative kinetic studies using monometallic controls indicate that the subunits of all of the zinc(II) complexes and of the 1,3-distal bimetallic copper(II) complex 7-Cu(2) act as essentially independent monometallic catalysts. The lack of cooperation between metal ions in the above complexes is in marked contrast with the behavior of the 1,2-vicinal bimetallic copper(II) complex 6-Cu(2), which exhibits high catalytic efficiency and high levels of cooperation between metal ions in the cleavage of HPNP and of diribonucleoside monophosphates NpN'. A third ligated metal ion at the upper rim does not enhance the catalytic efficiency, which excludes the simultaneous cooperation in the catalysis of the three metal ions in 8-Cu(3). Rate accelerations relative to the background brought about by 6-Cu(2) and 8-Cu(3) (1.0 mM catalyst, water solution, pH 7.0, 50 degrees C) are on the order of 10(4)-fold, largely independent of the nucleobase structure, with the exception of the cleavage of diribonucleoside monophosphates in which the nucleobase N is uracil, namely UpU and UpG, for which rate enhancements rise to 10(5)-fold. The rationale for the observed selectivity is discussed in terms of deprotonation of the uracil moiety under the reaction conditions and complexation of the resulting anion with one of the copper(II) centers.     

An Interlocked Figure-of-Eight Molecular Shuttle

Here is reported the synthesis and characterization of an interlocked figure-of-eight rotaxane molecular shuttle from a dibenzo-24-crown-8 (DB24C8) derivative. This latter bears two molecular chains, whose extremities are able to react together by click chemistry. One of the two substituting chain holds an ammonium function aimed at driving the self-entanglement through the complexation of the DB24C8 moiety. In the targeted figure-of-eight rotaxane, shuttling of the DB24C8 along the threaded axle from the best ammonium station to the weaker binding site triazolium was performed through deprotonation or deprotonation-then-carbamoylation of the ammonium. This way, two discrete co-conformational states were obtained, in which the folding and size of the two loops could be changed.     

Sequence selective recognition in the minor groove of dsDNA by pyrrole,imidazole-substituted bis-benzimidazole conjugates

A series of pyrrole, imidazole-substituted bis-benzimidazole conjugates, Py-Py-Im-gamma-biBenz, Py-Py-gamma-biBenz, Py-Im-gamma-biBenz, and Im-Py-gamma-biBenz (1-4), were prepared in an attempt to target dsDNA sequences possessing both A/T and G/C bps. The dsDNA interactions and sequence specificity of the conjugates have been characterized via spectrofluorometric titrations and thermal melting studies. All conjugates form 1:1 complexes with dsDNA at subnanomolar concentrations. The Im moiety selectively recognizes a G/C bp embedded in the A/T-rich binding site. This represents the first clear example of sequence selective recognition in a 1:1 motif.(1) The equilibrium association constant (K(1)) for complexation of a specific nine-bp dsDNA site, 5'-gcggTATGAAATTcgacg-3', by conjugate 1 is approximately 2.6 x 10(9) M(-1). Displacement of the G/C position or G/C-->A/T substitution within the nine-bp site decreases the K(1) by approximately 8-fold, whereas two continuous G/C bps decrease the K(1) by approximately 50-fold magnitude. The K(1) values for seven-bp dsDNA, 5'-gcggtaTGAAATTcgacg-3' and 5'-gcggtaCAAAATTcgacg-3', binding sites by conjugates Py-Im-gamma-biBenz (3) and Im-Py-gamma-biBenz (4) are approximately 2.3 x 10(9) and approximately 1.2 x 10(9) M(-1), respectively. However, the conjugates with no Im moiety, Py-Py-gamma-biBenz (2) and Py-Py-Py-gamma-biBenz (5 and 6), are specific for seven- to nine-bp A/T-rich sites and single A/T-->G/C bp substitution within the binding site decreases the K(1) values by 1-2 orders of magnitude.     

钐、铕-四环素类抗生素络合物荧光性能的研究及其在荧光分析中的应用

本文探讨了钐、铕-四环素、强力霉素、土霉素、金霉素络合物的荧光性能及利用该体系以荧光分析光度法测定痕量钐和铕的可能性与最佳测定条件.结果表明:在高碱度条件下(pH12～1.0mol/L NaOH),以四环素体系的稳定性、灵敏性最好,钐和铕的检测限分别为38.2和0.09ng/mL.     

Synthetic,Spectroscopic, and Biological Aspects of Triorganosilicon(IV) Complexes of Tridentate Schiff Bases

Abstract

Hexacoordinated organosilicon complexes of type R₃Si(L) (R = ethyl, butyl, phenyl; HL = ligand, obtained by the condensation of 4-aminoantipyrine with 2-hydroxyacetophenone, 2-hydroxybenzophenone, 2-hydroxybenzaldehyde, and 2-hydroxynapthaldehyde) have been synthesized and characterized by elemental analysis, molar conductance, and spectroscopic studies (IR, ¹H, ¹³C, and ²⁹Si NMR). The spectroscopic studies indicated that the ligands acted as tridentate coordinating through azomethine nitrogen, carbonyl oxygen, and oxygen of hydroxyl after deprotonation to the central silicon atom. The ligands and their organosilicon complexes have been evaluated for antimicrobial activities against fungi (Aspergillus niger and Candida albicans), and against Gram-positive bacteria (Staphylococcus aureus, Bacillus subtilis), and Gram-negative bacteria (Escherichia coli). The aim of the present work is to synthesize novel eco-friendly fungicides and bactericides and to study the effect of the biological activity of ligands on the complexation with organosilicon moiety. Supplemental materials are available for this article. Go to the publisher's online edition of Phosphorus, Sulfur, and Silicon and the Related Elements to view the free supplemental file.     

Surface‐Guided Formation of an Organocobalt Complex

Organocobalt complexes represent a versatile tool in organic synthesis as they are important intermediates in Pauson–Khand, Friedel–Crafts, and Nicholas reactions. Herein, a single‐molecule‐level investigation addressing the formation of an organocobalt complex at a solid–vacuum interface is reported. Deposition of 4,4′‐(ethyne‐1,2‐diyl)dibenzonitrile and Co atoms on the Ag(111) surface followed by annealing resulted in genuine complexes in which single Co atoms laterally coordinated to two carbonitrile groups undergo organometallic bonding with the internal alkyne moiety of adjacent molecules. Alternative complexation scenarios involving fragmentation of the precursor were ruled out by complementary X‐ray photoelectron spectroscopy. According to density functional theory analysis, the complexation with the alkyne moiety follows the Dewar–Chatt–Duncanson model for a two‐electron‐donor ligand where an alkyne‐to‐Co donation occurs together with a strong metal‐to‐alkyne back‐donation.     

Synthesis and characterization of thiolate-Ag(I) complexes by solid-state and solution NMR and their antimicrobial activity

Silver(I) complexes of several thiolates have been prepared. These complexes have been characterized by elemental analysis and 13C NMR spectroscopy. All the Ag(I)-thiolate complexes are polymeric in nature. Therefore, 13C CP MAS NMR is being used extensively to analyze the binding site of the ligand and the nature of complexation. A significant shift difference was observed for S binding site whereas smaller shift was observed for carboxylate binding site. The antimicrobial activities for Ag(I)-glutathione complex was measured and compared with Ag(I)-captopril complex.     

Copper(II) complexes of terminally protected pentapeptides containing three histidyl residues in alternating positions, Ac-His-Xaa-His-Yaa-His-NH2

Copper(II) complexes of the pentapeptides Ac-HisAlaHisValHis-NH2, Ac-HisValHisAlaHis-NH2, Ac-HisProHisAlaHis-NH2, Ac-HisAlaHisProHis-NH2, Ac-HisGlyHisValHis-NH2 and Ac-HisValHisGlyHis-NH2 have been studied by potentiometric, UV-Vis, CD and EPR spectroscopic methods. It has been found that the pentapeptides are efficient ligands for the complexation with copper(II) and exhibit an outstanding versatility in the co-ordination geometry of complexes. The presence of three histidyl residues provides a high possibility for the formation of macrochelates via the exclusive binding of imidazole-N donor atoms. The macrochelation suppresses, but cannot preclude the deprotonation and metal ion co-ordination of amide functions and the species [CuH(-2)L] and [Cu2H(-4)L] predominate at physiological pH in equimolar solutions and in the presence of excess metal ions, respectively. It is also clear from the data that both C-terminal and internal histidyl residues can work as the anchoring sites for metal binding and subsequent amide deprotonation resulting in the formation of co-ordination isomers and dinuclear species in equimolar solutions and in the presence of excess metal ions, respectively. In more alkaline solutions (pH approximately 10) a third amide function can be deprotonated and co-ordinated in the species [CuH(-3)L]- with (N-,N-,N-,N(im)) co-ordination. The dinuclear species [Cu2H(-5)L]- and [Cu2H(-6)L](2-) containing hydroxide ions and/or imidazolato bridges are formed at high pH in the presence of excess of metal ions. The insertion of one proline into the sequence preceding histidyl residues hinders the deprotonation of amide functions at that site and the formation of only mononuclear complexes was observed with these peptides.     

Negatively Charged π‐Electronic Systems by Deprotonation of Hydroxy‐Substituted Dipyrrolyldiketone Boron Complexes

Boron complexes of meso‐hydroxy‐substituted dipyrrolyldiketones, as the precursors of negatively charged π‐electronic systems, were synthesized via the oxidative introduction of an acetoxy unit at the meso position of dipyrrolyldiketones and subsequent hydrolysis. The anionic site formed upon deprotonation was moderately stabilized by hydrogen‐bond‐donating pyrrole NH, generating non‐complexing anionic species.     

H-ZSM-5分子筛上环己烯芳构化反应历程的理论研究

基于76T簇模型,采用量子力学和分子力学联合的ONIOM2(B3LYP/6-31G(d,p):UFF)方法研究了H-ZSM-5分子筛上环己烯芳构化反应历程.结果表明,环己烯首先吸附在分子筛酸性位上,与酸性质子共同脱除一个H2分子后,在分子筛骨架氧上生成烷氧配合物中间体;然后再脱质子得到环己二烯,同时酸性位复原;再经历脱氢和脱质子历程,最后得到产物苯,并吸附在复原的分子筛酸性位上.计算得到脱氢的活化能依次为279.64和260.21kJ/mol,脱质子的活化能依次为74.64和59.14kJ/mol.所有脱氢反应都是吸热过程,生成表面烷氧活性中间体,随后的脱质子反应能垒较低,而且是放热过程.此外,比较了环己烯在分子筛酸性位上的三个竞争反应,即脱氢、质子化和氢交换反应的活化能垒,证明环己烯优先发生脱氢反应.     

Complexation reaction of metal ions with peptide systems. Part IV. A potentiometric study of rare earth complexes of glycyl-L-proline

Amino acids and dipeptides are of biological importance and therefore their metal complexes are of special interest. Many workers have studied the complexes of various peptides with different transition metals in solution^{1 – 5}. Although the stability of complexes of lanthanum with amino acids has been studied^{6 – 11}, no work appears to have been done with dipeptide systems. In continuation to our previous work^{12, 13} on the complexation reactions of lanthanides with dipeptide systems, the present communication reports the stability constants and thermodynamic functions of Y(III), La(III), Ce(III), Pr(III) and Nd(III) with glycyl-L-proline in aqueous medium at 25, 35 and 45°C at 0.15 M (KNO₃) ionic strength. The Calvin—Bjerrum titration technique^{14, 15} as modified by Irving and Rossotti¹⁶ was used.     

Pt(II) uptake by dendrimer outer pockets: 1. Solventless ligand exchange reaction

Density functional theory is used to elucidate molecular-level details of the complexation of Pt(II) metal compounds with PAMAM dendrimers. Particular attention is given to the ligand exchange reaction (LER). Binding of Pt(II) complexes to one dendrimer atom site (monodentate binding) is found to be thermodynamically feasible. Tertiary amine nitrogen (N3) is found to be the most favorable binding site in agreement with previous experimental work. Comparing the binding of Pt(II) species to atom sites in simple molecules with those to similar sites in dendrimer outer pockets allowed us to assess the impact of dendrimer branches on the binding. The impact of branches is manifested in more complex reaction profiles for complexation of Pt(II) species, because of the numerous ways in which a single molecule could be hosted by an outer dendrimer pocket. It is found that branches slightly improve the binding strength to all sites, particularly to N3. However, they could also be responsible for the increase of the activation energy for direct LER of PtCl(4)(2-) and PtCl(3)(H(2)O)- at the N3 site. Considering the thermodynamics of both complexation steps, namely noncovalent binding (NCB) and LER, it is found that to have a PtCl(3)(-) moiety bound to N3, as a result of NCB + LER operating on PtCl(4)(2-), is more likely than to have any other ion hosted in the outer pockets. However, the activation energy for direct LER of PtCl(4)(2-) at the N3 site is found to be the largest among all Pt(II) metal complexes and even larger than the barrier to its own aquation yielding PtCl(3)(H(2)O)(-).     

The 13C NMR of olefins complexed with a binuclear Ag(I)–Yb(III) chelate

The effect of silver ion complexation on the ¹³C NMR of several rigid olefin structures has been determined. The silver ion induced chemical shifts (AgIS) are not amenable to easy interpretation. Addition of Yb(fod)₃ forms binuclear Ag–Yb complexes with the olefin. Lanthanide induced shifts (LIS) fall off rationally with distance from the site of complexation and the averaged position of the lanthanide. The complexes may be used as probes of olefin stereochemistry.     

An insight into CH···N hydrogen bond and stability of the complexes formed by trihalomethanes with ammonia and its monohalogenated derivatives

A theoretical study of the C?H···N hydrogen bond in the interactions of trihalomethanes CHX₃ (X = F, Cl, Br) with ammonia and its halogen derivatives NH₂Y (Y = F, Cl, Br) has been carried out thoroughly. The complexes are quite stable, and their stability increases in going from CHF₃ to CHCl₃ then to CHBr₃ when Y keeps unchanged. With the same CHX₃ proton donor, enhancement of the gas phase basicity of NH₂Y strengthens stability of the CHX₃···NH₂Y complex. The C?H···N hydrogen bond strength is directly proportional to the increase of proton affinity (PA) at N site of NH₂Y and the decrease of deprotonation enthalpy (DPE) of C?H bond in CHX₃. The CHF₃ primarily appears to favor blue shift while the red‐shift is referred to the CHBr₃. The blue‐ or red‐shift of CHCl₃ strongly depends on PA at N site of NH₂Y. We suggest the ratio of DPE/PA as a factor to predict which type of hydrogen bond is observed upon complexation. The SAPT2+ results show that all C?H···N interactions in the complexes are electrostatically driven regardless of the type of hydrogen bond, between 48% and 61% of the total attractive energy, and partly contributed by both induction and dispersion energies.     

Preparation,characterization, DFT calculations and ethylene oligomerization studies of iron(II) complexes bearing 2-(1H-benzimidazol-2-yl)-phenol derivatives

Five 2-(1H-benzimidazol-2-yl)-phenol derivatives including 1H (HL₁), 5-chloro-(HL₂), 5-methyl-(HL₃), 5,6-dichloro-(HL₄), and 5,6-dimethyl-(HL₅) were synthesized by the reaction of their corresponding benzene-1,2-diamine precursors and 2-hydroxybenzaldehyde which subsequently was employed in complexation with Fe(II) to prepare complexes C1–C5, respectively. Indeed, in all complexes, the ligands were coordinated as bidentate, via the C=N nitrogen and hydroxy oxygen atom of benzimidazole moiety and phenol ring, respectively. The compounds were characterized by FTIR, UV–vis, ¹H- and ¹³C-NMR spectropscopy, ICP, and elemental analysis (C, H, and N). The purity of these compounds was determined by melting point (m.p )and TLC. The synthesized ligands and complexes were geometrically optimized by Gaussian09 software at B3LYP/TZVP level of theory and satisfactory theoretical–experimental agreement was achieved for analysis of IR data of the compounds. Catalytic behavior of the iron(II) complexes was investigated for ethylene reactivity. On activation with diethylaluminum chloride (Et₂AlCl), iron(II) complex (C4) showed the highest activity (1686 kg oligomers.mol^?1(Fe).h^?1) for ethylene oligomerization when it contains chlorine substituents and exhibits good selectivity for linear 1-butene. The steric and electronic effects of ligands were investigated in detail on the influence of their catalytic activities.     

Structural characterization and isomer differentiation of chalcones by electrospray ionization tandem mass spectrometry

A series of chalcones were characterized by electrospray ionization tandem mass spectrometry (MS(n)). Several ionization modes were evaluated, including protonation, deprotonation and metal complexation, with metal complexation being the most efficient. Collision-activated dissociation (CAD) was used to characterize the structures, and losses commonly observed include H(2), H(2)O, CO and CO(2), in addition to methyl radicals for the methoxy-containing chalcones. CAD of the metal complexes, especially [Co(II) (chalcone-H) 2,2'-bipyridine](+), allowed the most effective differentiation of the isomeric chalcones with several diagnostic fragment ions appearing upon activation of the metal complexes. MS(n) experiments were performed to support identification of some fragment ions and to verify the proposed fragmentation pathways. In several cases, MS(n) indicated that specific neutral losses occurred by stepwise pathways, such as the neutral loss of 44 u as CH3* and HCO*, or CH(4) and CO, in addition to CO(2).