X‐ray investigations of bicyclic α‐methylene‐δ‐valerolactones. V. (4aS,7R,8aR)‐7‐Isopropenyl‐4a‐methyl‐3‐methyleneperhydrochromen‐2‐one

The title compound, C₁₄H₂₀O₂, adopts a conformation in which the δ‐valerolactone and cyclohexane rings are almost coplanar with one another. The γ‐methyl substituent occupies an axial position with respect to the cyclohexane ring. The δ‐valerolactone moiety adopts an envelope arrangement, while the cyclohexane ring exists in a chair conformation.     

Crystal and Molecular Structure of 5，6，7，8，9，10－Hexahydro－3－（4－methylphenylamino）－2－thioxoquinoxaline

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Synthetic and structural studies on macrocyclic amino cyclitols--conformational chameleons

Starting from quinic acid the synthesis of 1,4-butanediol-linked macrocyclic aminocyclitols 30, 32, 34, 36 and 38 is described. Assembly was achieved by olefin cross-metathesis of appropriate cyclohexyl allyl ethers followed by ring-closing metathesis of bis-O-allyl homodimers. In all five cases studied, the only products that were formed were those resulting from direct ring-closing metathesis; the formation of larger rings was not detected. These macrocycles exhibited diverse conformational behaviour which included formation of stable separable conformers 31a and 31b as well as conformationally dynamic macrocycles 35 in which a ring flip in one cyclohexane chair conformer induces a ring flip of the other cyclohexane ring through the linking chains of the macrocycles. The activation energy for the inversion of the chair conformation in this process was determined to be about 38 kJ mol(-1), which is about 7 kJ mol(-1) lower than the activation energy for the ring flip of the unsubstituted cyclohexane ring. In all cases, the conformational studies strongly suggest that intramolecular H-bonding between 1,3-diaxially oriented amido and alcohol or ether groups exerts a decisive contribution to the overall stabilisation of the preferred cyclohexane chair conformation.     

Synthesis and Crystal Structure of Monocarbonyl Analogs of Curcumin

Two monocarbonyl analogs of curcumin containing bis(2,6-difluorobenzyl) were synthesized,and their molecular structures were characterized by 1H NMR,ESI-MS,and X-ray crystallography.In this paper,the crystal structures of these two analogs(A75 and C75) are described and compared with their bis(2-fluorobenzyl) analogues as well as with the available data of curcumin.The cyclopentane rings in A75 have an envelope conformation,while the cyclohexane ring in C75 has a chair conformation.The compounds are symmetrical and the central structure of A75 and C75 connects with two benzylidene rings through E,E-oriented double bonding.     

Conformational characteristics of opioid kappa-receptor agonist: crystal structure of (5S,7S,8S)-(-)-N-methyl-N-[7-(1-pyrrolidinyl)-1- oxaspiro[4.5]dec-8-yl]benzeneacetamide (U69,593), and conformational comparison with some kappa-agonists

(5S,7S,8S)-(-)-N-Methyl-N-[7-(1-pyrrolidinyl)-1- oxaspiro[4.5]dec-8-yl]benzeneacetamide (U69,593) is a potent agonist to opioid kappa-receptor. The crystal structure of U69,593 has been analyzed by the X-ray diffraction method. The molecule, as a whole, took an open conformation, and four cyclic rings composing the main skeleton were far apart from each other. The N and O atoms substituted for the cyclohexane ring were all in the equatorial position. The best planes of two 5-membered rings were almost perpendicular to that of the cyclohexane ring, and the N-methylamide linkage was also orthogonal to this ring plane. The conformation of the U69,593 molecule was compared with other kappa-agonists.     

Conformational analysis of lappaconitine and heteratisine

The conformation of the carbon skeleton in diterpenoid alkaloids of the lappaconitine, heteratisine, and lycoctonine types was analyzed as a function of the nature of the substituents and intramolecular H-bonds and their states in the crystal based on x-ray structure analyses of lappaconitine and heteratisine and data in the Cambridge Crystallographic Data Centre. Ring A in these diterpenoid alkaloids adopted the boat or chair conformation depending on the presence or absence of an intramolecular H-bond between atoms of the skeleton N and O in the C1 position, respectively. The other rings C, D, and F of the framework did not undergo substantial conformational changes whereas rings B and E showed slight distortion that converted them to other similar canonical forms.     

N,N′-二[3-氯-5S-(l-孟氧基)-2(5H)-4-呋喃酮基]-1,4-丁二胺的合成及晶体结构(英文)

合成了N,N′-二[3-氯-5S-(l-孟氧基)-2(5H)-4-呋喃酮基]-1,4-丁二胺,并通过IR,1H NMR,MS和X射线单晶衍射对其进行了表征.X射线单晶衍射结果表明:标题化合物的不对称结构单元中包含一个平面的呋喃酮环和一个椅式的环己烷环,四个手性中心.标题化合物通过N—H…O分子间氢键作用实现空间堆积.     

Crystal and molecular structure of 9-exo-(4-nitrophenyl)thio-10endo-chlorotricyclo[6.3.1.02,7]dodeca-2(7),3,5-triene

Crystal and molecular structure of 9-exo-(4-nitrophenyl)thio-10-endo-chlorotricyclo[6.3.1.0^2,7]dodeca-2(7),3,5-triene (I) was determined by X-ray diffraction analysis: space group P2₁/c, a=9.514(1), b=13.457(1), c=13.163(2) Å, β=104.72(1)°, Z=4, R=0.041 (CAD-4 automatic diffractometer, λCuK_α, 2747 independent reflections with I≥3σ). The framework of molecule I consists of three condensed rings: the benzene ring, the cyclopentene ring having an envelope conformation with a flap at the bridging C atom, and the cyclohexane ring having a distorted chair conformation. The-SAr and Cl substituents have a trans-diaxial orientation at the cyclohexane ring. Molecule I is sterically hindered; it has appreciably reduced interatomic contacts: Cl…C₂, Cl…C₇, S…C₁₂, etc.     

Stereochemistry and opioid receptor affinity of 2,4‐dipyridine‐3,7‐diazabicyclo[3.3.1]nonanones ‐ influence of the substituent in position N7

The stereochemistry the 2,4‐di‐arene substituted 3,7‐diazabicyclo[3.3.1]nonan‐9‐one 1,5‐dicarboxylate skeleton was found to be regulated by the kind of substituents attached to the arene rings as well as to the nitrogens N3 and N7. Conformational isomers, i.e., chair/chair, boat/chair and chair/boat, in addition to cis/trans conflgurational isomerism with respect to the arene rings were reported. Since the analgesic potency of the diazabicyclononanones, which is related to their affinity toward the κ‐opioid receptor, is governed by the stereochemistry of the molecules, the influence of the substituents at nitrogen N7 was studied herein. The various differently N7 substituted diazabicyclononanones were found to crystallise in a highly symmetrical chair/chair conformation. However, beside HZ2 none of the compounds exhibits high affinity to the κ receptor. In contrast, some compounds with affinity to the μ receptor could be identified. In addition, the N7‐(4‐carboxybenzyl) substituted compound was found to have affinity to the δ receptor in the submi‐cromolar range of concentration.     

Puckering behavior in six new phosphoric triamides containing aliphatic six- and seven-membered ring groups and a database survey of analogous ring-containing structures

The influence of a N heteroatom on the ring conformations of six- and seven-membered aliphatic rings in six new C(O)NHP(O)-based phosphoric triamide structures (analysed by X-ray crystallography) is investigated. Additionally the influence of steric and crystal packing effects is also studied by the analysis of Hirshfeld surfaces. The results are compared to analogous structures with three- to seven- aliphatic membered rings deposited in the Cambridge Structural Database. In the newly determined structures, the six-membered rings only show the near-chair conformation with a maximum deviation of the θ puckering parameter of 4.4° from the ideal chair value of 0°/180°, while the seven-membered rings are found in different conformations such as near-chair, twist chair and twist sofa.     

N，N’-二[3-氯-5S-（l-孟氧基）-2（5H）-4-呋喃酮基]-1，4-丁二胺的合成及晶体结构

合成了N,N’-二[3-氯-5S-（l-孟氧基）-2（5H）-4-呋喃酮基]-1,4-丁二胺,并通过IR,^1H NMR,MS和X射线单晶衍射对其进行了表征．X射线单晶衍射结果表明：标题化合物的不对称结构单元中包含一个平面的呋喃酮环和一个椅式的环己烷环,四个手性中心．标题化合物通过N—H…O分子间氢键作用实现空间堆积．     

Synthesis and crystal structure of maleopimaric acid

The title compound maleopimaric acid was synthesized by a Diels-Alder reaction between maleic anhydride and Pinus elliottii engelm oleoresin at room temperature and it was characterized by single crystal X-ray diffraction. The white crystals crystallized in the orthorhombic system, space group P2(12121) with cell dimensions: a = 7.6960 (15) A, b = 11.851 (2) A, c = 24.577 (5) A, alpha = 90 degrees, beta = 90 degrees, gamma = 90 degrees, V = 2241.6(8) A(3), and R(1) = 0.0716, wR(2) = 0.1975. The two fused and unbridged cyclohexane rings form a trans ring junction with chair conformation with two methyl groups in axis positions, the anhydride ring is planar. Crystal water existed in the molecular and stabilized the structure through intermolecular hydrogen bonds.     

Konformative Beweglichkeit Flexibler Ringsysteme–XII Modellrechnungen zur Ringinversion bei Methylsubstituierten Cyclohexanen

For the interpretation of experimental data on the activation energy and free activation enthalpy for the inversion of cyclohexane and its di-, tetra- and hexa-methyl derivatives, model calculations were made to determine the ‘relative’ energies of the ground, intermediate and transition states of the molecules. For this purpose Hendrickson's model was extended so that with internal molecular variables (bond lengths, valence and torsional angles) the topography and the ‘relative’ energy of every possible unsymmetrical conformation could be included. To obtain optimal agreement between the calculated values and the experimental results a total of 17 different combinations of potential functions for deformation of valence angles, torsional angles and H? H interactions were used. By application of the extended calculating procedure it was found that for cyclohexane the half-chair conformation is not, as until now assumed, the only transition conformation in chair inversion, but that there are numerous other unsymmetrical transition conformations with similar energies. The calculations for methyl cyclohexanes showed that for molecules with synaxial arrangement of methyl groups the relative energy of the chair form is considerably increased. The chair form is however still the most stable, even in the case of 1,1,3,3,5,5-hexamethylcyclohexane. The most favourable twist conformations are about 2.6 to 6.5 kcal/mole energy richer. Calculation of activation energies showed that, with synaxial arrangement of two or more methyl groups, the relative energy of the transition conformation is less markedly increased than is that of the ground state, with the result that the activation energy is reduced in comparison with that for cyclohexane.     

Conformational properties of α- and β-azabicyclane opiates. The effect of conformation on pharmacological activity

Conformational energy calculations using the MM 2 (molecular mechanics II) program are reported for diastereoisomeric α- and β-azabicyclanes (3-methyl-9-methoxy-9-phenyl-3-azabicyclo [3.3.1] nonanes) which are prototypical phenyl-axial and phenyl-equatorial opiates. After energy minimization, both compounds are found to prefer a chair–chair conformation of the piperidine and cyclohexane rings with two mirror image orientations of the phenyl and methoxyl groups. The calculations also indicate that the equilibrium conformations of the phenyl and methoxyl groups are very similar in the two diastereoisomers. A morphine-like conformation of the phenyl group was found to be very unfavorable because of a high barrier to rotation of the phenyl group. This does not have an apparent effect on opiate agonist properties, but does result in a significant weakening of the antagonist activity of the N-allyl derivative of α-azabicyclane. This is discussed in terms of a model for phenyl-axial and phenyl-equatorial opiate substrates which accounts for both similarities and differences in their structure–activity relationships. A detailed comparison is also made between the computed structures and those observed by x-ray crystallography with excellent agreement between the two.     

Triterpenoide. XX. 3β‐Acetoxy‐12‐oxo‐18β‐olean‐ und 3β‐Acetoxy‐12,19‐dioxo‐9(11),13(18)‐oleandien‐28‐säure‐methyl­ester

The structures of methyl 3β‐acetoxy‐12‐oxo‐18β‐olean‐28‐oate [C₃₃H₅₂O₅, (I)] and methyl 3β‐acetoxy‐12,19‐dioxoolean‐9(11),13(18)‐dien‐28‐oate [C₃₃H₄₆O₆, (II)] are described. In (I), all rings are in the chair conformation, rings D and E are cis and the other rings trans‐fused. In compound (II), only rings A and E are in the chair conformation, ring B has a distorted chair conformation, ring C a distorted half‐boat and ring D an insignificantly distorted half‐chair conformation.     

A proton magnetic resonance study of the conformation of the seven-membered ring in benzocycloheptene

The computer analysis of the PMR spectra of several partially deuterated benzocycloheptene derivatives at ?120° provides values for all the coupling constants about the C₃? C₄ bond. An interpretaion using the Karplus equation shows unambiguously that the seven-membered ring exists as a chair conformation. The relationship between the coupling constants determined shows that the form of the Karplus equation established empirically for cyclohexane is applicable to this seven-membered ring. A comparison of coupling constants shows that the benzocycloheptene chair is more puckered than the cyclohexane chair.     

Achievement of ring inversion of myo-inositol derivatives due to silyloxy/silyloxy repulsion enhanced by the trans-substituents on both sides

The introduction of quite bulky trialkyl or diarylalkylsilyl groups into vicinal trans-hydroxy groups induced a conformational flip of certain multifunctionalized cyclohexane rings from the usual chair form possessing more equatorial substituents (equatorial-rich chair form) into another chair-form that has more axial substituents (axial-rich chair form). This realization was experimentally revealed by the conformational study of the synthetic myo-inositol derivatives possessing two tert-butyldimethylsilyl (TBS), two triisopropylsilyl (TIPS), or two tert-butyldiphenylsilyl (TBDPS) groups on an adjacent trans-diol. Among them, the cyclohexane rings of the 4,5-bis-O-TIPS-myo-inositol, 4,5-bis-O-TBDPS-myo-inositol, and 1,2,3,6-tetra-O-benzyl-4,5-bis-O-TBDPS-myo-inositol were in the axial-rich chair form. Comparison of the ring conformations also revealed that the order of the repulsion was OTBDPS/OTBDPS>OTIPS/OTIPS>OTBS/OTBS, and the silyloxy/silyloxy repulsion was enhanced when the two silyloxy groups were placed in the center of the contiguous four equatorial substituents.     

Synthesis and Crystal Structure of 2-Oxo-3-phenyl-1-oxaspiro[4.5]dec-3-en-4-yl 4-chlorobenzoate

The title compound 2-oxo-3-phenyl-1-oxaspiro[4.5]dec-3-en-4-yl 4-chloro-benzoate 6 (C22H19ClO4, Mr = 382.82) has been synthesized by the condensation reaction of 4-hydroxy-3-phenyl-1-oxaspiro[4.5]dec-3-en-2-one 5 with 4-chlorobenzoyl chloride, and its crystal structure was determined by single-crystal X-ray diffraction. The crystal belongs to the monoclinic system, space group P21/n with a = 10.6749(11), b = 6.0573(7), c = 29.680(2) , β = 94.073(3)o, V = 1914.3(3) 3, Z = 4, Dc = 1.328 g/cm3, F(000) = 800, μ = 0.224 mm–1, S = 1.003, the final R = 0.0605 and wR = 0.1500 for 1828 observed reflections with I > 2σ(I) and 244 variable parameters. The crystal analysis shows that the molecular structure of the title compound has one planar furan ring, one chair conformation cyclohexane ring and two benzene rings. The furan and cyclohexane rings adopt whorl conformations.     

An NMR study of the conformational equilibrium of 5-fluoro-1,3-dioxan in solution. Dependence on solvent

The ¹H and ¹⁹F NMR parameters of 5-fluoro-1,3-dioxan ( 1 ) dissolved in a number of solvent systems are interpreted on the basis of fast inversion between two chair conformations. In cyclohexane solution the two chair conformations are almost equally populated, whereas in more polar solvents, such as chloroform, the conformation having the fluorine substituent in an axial position is strongly preferred. Addition of acetic acid to a solution of 1 in cyclohexane increases the preference of the fluorine substituent for the axial orientation. Possible reasons for these observations are discussed.     

Energetic analyses of chair and boat conformations of maleimide substituted cyclohexane derivatives

An analysis of the conformational preferences of two maleimide substituted cyclohexane derivatives proposed as scaffolds for HIV-1 fusion inhibitors is presented. Hybrid Low Mode-Monte Carlo (1:1) conformational searches using seven different force fields were performed in combination with the GBSA(water) solvent model. Low energy structures identified in this way were subjected to geometry optimization on the B3LYP/6-31G** surface. Solvent effects were included in the quantum calculation using the self-consistent reaction field model for water. Quantum results indicate that the 1,3,5-maleimide functionalized 1,3,5-methyl cyclohexane is more stable in the boat conformation, whereas 1,3,5-maleimide functionalized cyclohexane adopts the expected chair conformation with equatorial arms. None of the force fields studied was able to predict the unexpected preference for the boat conformation of 1,3,5-maleimide functionalized 1,3,5-methyl cyclohexane. Comparison of low energy and experimental structures was also performed.